Guide to the Human Genome
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Search of human proteins with 14110420

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a
[Homo sapiens]
         (355 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a ...   738   0.0  
gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b ...   687   0.0  
gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c ...   595   e-170
gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d ...   544   e-155
gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform ...   404   e-113
gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo...   399   e-111
gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform ...   328   3e-90
gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo sap...   200   2e-51
gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a ...   199   2e-51
gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b...   198   7e-51
gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isofor...   196   3e-50
gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform...   196   3e-50
gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Hom...   195   5e-50
gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Hom...   195   5e-50
gi|89035135 PREDICTED: similar to heterogeneous nuclear ribonucl...   178   7e-45
gi|89034333 PREDICTED: similar to heterogeneous nuclear ribonucl...   178   7e-45
gi|169203146 PREDICTED: similar to heterogeneous nuclear ribonuc...   177   1e-44
gi|20373175 musashi 2 isoform a [Homo sapiens]                        171   7e-43
gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo sapi...   168   6e-42
gi|25121993 musashi 2 isoform b [Homo sapiens]                        167   1e-41
gi|4505255 musashi 1 [Homo sapiens]                                   164   9e-41
gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]         150   1e-36
gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]         150   1e-36
gi|6678271 TAR DNA binding protein [Homo sapiens]                     117   1e-26
gi|55956788 nucleolin [Homo sapiens]                                   83   3e-16
gi|226497734 RNA binding motif protein 19 [Homo sapiens]               83   4e-16
gi|226497654 RNA binding motif protein 19 [Homo sapiens]               83   4e-16
gi|226497574 RNA binding motif protein 19 [Homo sapiens]               83   4e-16
gi|4502847 cold inducible RNA binding protein [Homo sapiens]           76   4e-14
gi|5803137 RNA binding motif protein 3 [Homo sapiens]                  75   1e-13

>gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a
           [Homo sapiens]
          Length = 355

 Score =  738 bits (1906), Expect = 0.0
 Identities = 355/355 (100%), Positives = 355/355 (100%)

Query: 1   MSEEQFGGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGS 60
           MSEEQFGGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGS
Sbjct: 1   MSEEQFGGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGS 60

Query: 61  AESEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKF 120
           AESEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKF
Sbjct: 61  AESEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKF 120

Query: 121 GEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP 180
           GEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP
Sbjct: 121 GEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP 180

Query: 181 VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 240
           VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM
Sbjct: 181 VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 240

Query: 241 EKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQ 300
           EKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQ
Sbjct: 241 EKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQ 300

Query: 301 GYGNYGYNSQGYGGYGGYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY 355
           GYGNYGYNSQGYGGYGGYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY
Sbjct: 301 GYGNYGYNSQGYGGYGGYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY 355


>gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b
           [Homo sapiens]
          Length = 336

 Score =  687 bits (1773), Expect = 0.0
 Identities = 336/355 (94%), Positives = 336/355 (94%), Gaps = 19/355 (5%)

Query: 1   MSEEQFGGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGS 60
           MSEEQFGGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGS
Sbjct: 1   MSEEQFGGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGS 60

Query: 61  AESEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKF 120
           AESEGAKIDASKNEEDEG                   KMFIGGLSWDTTKKDLKDYFSKF
Sbjct: 61  AESEGAKIDASKNEEDEG-------------------KMFIGGLSWDTTKKDLKDYFSKF 101

Query: 121 GEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP 180
           GEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP
Sbjct: 102 GEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP 161

Query: 181 VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 240
           VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM
Sbjct: 162 VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 221

Query: 241 EKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQ 300
           EKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQ
Sbjct: 222 EKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQ 281

Query: 301 GYGNYGYNSQGYGGYGGYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY 355
           GYGNYGYNSQGYGGYGGYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY
Sbjct: 282 GYGNYGYNSQGYGGYGGYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY 336


>gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c
           [Homo sapiens]
          Length = 306

 Score =  595 bits (1535), Expect = e-170
 Identities = 305/355 (85%), Positives = 306/355 (86%), Gaps = 49/355 (13%)

Query: 1   MSEEQFGGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGS 60
           MSEEQFGGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGS
Sbjct: 1   MSEEQFGGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGS 60

Query: 61  AESEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKF 120
           AESEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKF
Sbjct: 61  AESEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKF 120

Query: 121 GEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP 180
           GEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP
Sbjct: 121 GEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP 180

Query: 181 VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 240
           VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM
Sbjct: 181 VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 240

Query: 241 EKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQ 300
           EKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGG                
Sbjct: 241 EKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGG---------------- 284

Query: 301 GYGNYGYNSQGYGGYGGYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY 355
                                            +QQSGYGKVSRRGGHQNSYKPY
Sbjct: 285 ---------------------------------DQQSGYGKVSRRGGHQNSYKPY 306


>gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d
           [Homo sapiens]
          Length = 287

 Score =  544 bits (1402), Expect = e-155
 Identities = 286/355 (80%), Positives = 287/355 (80%), Gaps = 68/355 (19%)

Query: 1   MSEEQFGGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGS 60
           MSEEQFGGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGS
Sbjct: 1   MSEEQFGGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGS 60

Query: 61  AESEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKF 120
           AESEGAKIDASKNEEDEG                   KMFIGGLSWDTTKKDLKDYFSKF
Sbjct: 61  AESEGAKIDASKNEEDEG-------------------KMFIGGLSWDTTKKDLKDYFSKF 101

Query: 121 GEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP 180
           GEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP
Sbjct: 102 GEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP 161

Query: 181 VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 240
           VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM
Sbjct: 162 VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 221

Query: 241 EKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQ 300
           EKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGG                
Sbjct: 222 EKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGG---------------- 265

Query: 301 GYGNYGYNSQGYGGYGGYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY 355
                                            +QQSGYGKVSRRGGHQNSYKPY
Sbjct: 266 ---------------------------------DQQSGYGKVSRRGGHQNSYKPY 287


>gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform a
           [Homo sapiens]
          Length = 332

 Score =  404 bits (1038), Expect = e-113
 Identities = 215/348 (61%), Positives = 251/348 (72%), Gaps = 41/348 (11%)

Query: 22  SAGEQEGAMVAATQGAA-AAAGSGAGTGGGTASGGTEGGSAE-SEGAKIDASKNEEDEGH 79
           + G  E    A  +G + A AG+GA  G G A+     G+   +EG +I+ASKNEED G 
Sbjct: 12  TTGATENGHEAVPEGESPAGAGTGAAAGAGGATAAPPSGNQNGAEGDQINASKNEEDAG- 70

Query: 80  SNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRG 139
                             KMF+GGLSWDT+KKDLKDYF+KFGEVVDCT+K+DP TGRSRG
Sbjct: 71  ------------------KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRG 112

Query: 140 FGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIR 199
           FGF+LFK++ SV+KV+DQKEH+L+G+VIDPK+A AMK K+PVKKIFVGGL+P+  EEKIR
Sbjct: 113 FGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMK-KDPVKKIFVGGLNPEATEEKIR 171

Query: 200 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMS 259
           EYFG FGE+E+IELPMD K NKRRGF FITFKEEEPVKK++EKK+H V  SKCEIKVA  
Sbjct: 172 EYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQP 231

Query: 260 KEQYQQQQQWGSRGGFAGRARGR--------GGGPSQNWNQGYSNYWNQGYGNYGYNSQG 311
           KE Y QQQQ+GS GG   R RG         GGG SQ+WNQGY NYWNQGYG      QG
Sbjct: 232 KEVY-QQQQYGS-GGRGNRNRGNRGSGGGGGGGGQSQSWNQGYGNYWNQGYG----YQQG 285

Query: 312 YG-GYGGYDYTGYNNYYGYG---DYSNQQSGYGKVSRRGGHQNSYKPY 355
           YG GYGGYDY+ Y  YYGYG   DYS   + YGK  RRGGHQN+YKPY
Sbjct: 286 YGPGYGGYDYSPY-GYYGYGPGYDYSQGSTNYGKSQRRGGHQNNYKPY 332


>gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo
           sapiens]
          Length = 420

 Score =  399 bits (1026), Expect = e-111
 Identities = 199/307 (64%), Positives = 235/307 (76%), Gaps = 33/307 (10%)

Query: 63  SEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGE 122
           +EG+KI+ASKN++D+G                   KMFIGGLSWDT+KKDL +Y S+FGE
Sbjct: 133 AEGSKINASKNQQDDG-------------------KMFIGGLSWDTSKKDLTEYLSRFGE 173

Query: 123 VVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK 182
           VVDCT+K DP+TGRSRGFGFVLFK++ SVDKV++ KEHKL+GK+IDPKRAKA+K KEP K
Sbjct: 174 VVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPK 233

Query: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
           K+FVGGLSPDT EE+I+EYFG FGE+E+IELPMD KTN+RRGFCFIT+ +EEPVKK++E 
Sbjct: 234 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 293

Query: 243 KYHNVGLSKCEIKVAMSKEQY--QQQQQWGSRG---GFAGRARGRGGGPSQNWNQGYSNY 297
           +YH +G  KCEIKVA  KE Y  QQQQQ G RG   G  G  RGRG G  QNWNQG++NY
Sbjct: 294 RYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQGFNNY 353

Query: 298 WNQGYGNYGY---NSQGYGGYGGYDYTGYN--NY---YGYGDYSNQQSGYGKVSRRGG-H 348
           ++QGYGNY       Q Y GYGGYDYTGYN  NY    GY DYS QQS YGK SR GG H
Sbjct: 354 YDQGYGNYNSAYGGDQNYSGYGGYDYTGYNYGNYGYGQGYADYSGQQSTYGKASRGGGNH 413

Query: 349 QNSYKPY 355
           QN+Y+PY
Sbjct: 414 QNNYQPY 420



 Score = 61.6 bits (148), Expect = 1e-09
 Identities = 31/92 (33%), Positives = 49/92 (53%)

Query: 156 DQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 215
           D  E+    +  +  +  A K ++   K+F+GGLS DT ++ + EY   FGEV    +  
Sbjct: 122 DMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKT 181

Query: 216 DNKTNKRRGFCFITFKEEEPVKKIMEKKYHNV 247
           D  T + RGF F+ FK+   V K++E K H +
Sbjct: 182 DPVTGRSRGFGFVLFKDAASVDKVLELKEHKL 213


>gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform b
           [Homo sapiens]
          Length = 285

 Score =  328 bits (842), Expect = 3e-90
 Identities = 181/336 (53%), Positives = 216/336 (64%), Gaps = 64/336 (19%)

Query: 22  SAGEQEGAMVAATQGAA-AAAGSGAGTGGGTASGGTEGGSAE-SEGAKIDASKNEEDEGH 79
           + G  E    A  +G + A AG+GA  G G A+     G+   +EG +I+ASKNEED G 
Sbjct: 12  TTGATENGHEAVPEGESPAGAGTGAAAGAGGATAAPPSGNQNGAEGDQINASKNEEDAG- 70

Query: 80  SNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRG 139
                             KMF+GGLSWDT+KKDLKDYF+KFGEVVDCT+K+DP TGRSRG
Sbjct: 71  ------------------KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRG 112

Query: 140 FGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIR 199
           FGF+LFK++ SV+KV+DQKEH+L+G+VIDPK+A AMK K+PVKKIFVGGL+P+  EEKIR
Sbjct: 113 FGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMK-KDPVKKIFVGGLNPEATEEKIR 171

Query: 200 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMS 259
           EYFG FGE+E+IELPMD K NKRRGF FITFKEEEPVKK++EKK+H V  SKCEIKVA  
Sbjct: 172 EYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQP 231

Query: 260 KEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQGYGNYGYNSQGYGGYGGYD 319
           KE YQQQQ                             Y + G GN    ++G GG GG  
Sbjct: 232 KEVYQQQQ-----------------------------YGSGGRGNRNRGNRGSGGGGGGG 262

Query: 320 YTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY 355
             G  NY             GK  RRGGHQN+YKPY
Sbjct: 263 GQGSTNY-------------GKSQRRGGHQNNYKPY 285


>gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo
           sapiens]
          Length = 378

 Score =  200 bits (508), Expect = 2e-51
 Identities = 114/298 (38%), Positives = 165/298 (55%), Gaps = 32/298 (10%)

Query: 69  DASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTL 128
           D+ +     G     P+  E         K+FIGGLS++TT   L+++F K+G + DC +
Sbjct: 13  DSGRRRRRRGEEGHDPKEPEQLR------KLFIGGLSFETTDDSLREHFEKWGTLTDCVV 66

Query: 129 KLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP------VK 182
             DP T RSRGFGFV +   E VD  M  + HK++G+V++PKRA + +          VK
Sbjct: 67  MRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVK 126

Query: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
           KIFVGG+  DT E  +R+YF  +G++E+IE+  D ++ K+RGF F+TF + + V KI+ +
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186

Query: 243 KYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRG---GGPSQNWNQGYSNYWN 299
           KYH +    CE+K A+SK++ Q       RGG +G   GRG   GG   N+ +G +    
Sbjct: 187 KYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGNFGGGGGNFGRGGNFGGR 246

Query: 300 QGY--------GNYGYNSQGYGGYG--GYDY---TGYNNYYGYG----DYSNQQSGYG 340
            GY        G+YG    GY G+G  G +Y    GY++  GYG     Y NQ  GYG
Sbjct: 247 GGYGGGGGGSRGSYGGGDGGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYG 304



 Score = 29.3 bits (64), Expect = 5.6
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 273 GGFAGRARGRGGGPSQNWN---QGYSNYWNQGYGNYGYNSQGYGGYGGYDYTGYNNYYG 328
           G F G   G GG  +   N   Q  SNY     G++G  S G    GGY   G +  YG
Sbjct: 316 GNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGSGGYG 374



 Score = 28.9 bits (63), Expect = 7.3
 Identities = 16/53 (30%), Positives = 22/53 (41%)

Query: 7   GGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGG 59
           GG+          G  +G+Q+        G+     SG+  GGG  SGG  GG
Sbjct: 320 GGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGSGG 372


>gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a
           [Homo sapiens]
          Length = 320

 Score =  199 bits (507), Expect = 2e-51
 Identities = 108/287 (37%), Positives = 167/287 (58%), Gaps = 19/287 (6%)

Query: 87  SEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFK 146
           SE+     +  K+FIGGLS++TT + L+ +F ++G + DC +  DP T RSRGFGFV + 
Sbjct: 4   SESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYA 63

Query: 147 ESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKIRE 200
             E VD  M+ + HK++G+V++PKRA + +  +       VKKIFVGG+  DT E  +R+
Sbjct: 64  TVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRD 123

Query: 201 YFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 260
           YF  +G++E IE+  D  + K+RGF F+TF + + V KI+ +KYH V    CE++ A+SK
Sbjct: 124 YFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSK 183

Query: 261 EQY---QQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNY-------WNQGYGNYGYNSQ 310
           ++       Q+  S  G  G  RG G G + N+ +G  N+        ++G G YG +  
Sbjct: 184 QEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRG-GNFSGRGGFGGSRGGGGYGGSGD 242

Query: 311 GYGGYG--GYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY 355
           GY G+G  G ++ G  +Y  +G+Y+NQ S +G +        S  PY
Sbjct: 243 GYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPY 289



 Score = 59.3 bits (142), Expect = 5e-09
 Identities = 31/95 (32%), Positives = 53/95 (55%)

Query: 171 RAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 230
           ++++ K  E ++K+F+GGLS +T +E +R +F  +G +    +  D  T + RGF F+T+
Sbjct: 3   KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62

Query: 231 KEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQ 265
              E V   M  + H V     E K A+S+E  Q+
Sbjct: 63  ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQR 97


>gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b
           [Homo sapiens]
          Length = 372

 Score =  198 bits (503), Expect = 7e-51
 Identities = 112/280 (40%), Positives = 164/280 (58%), Gaps = 19/280 (6%)

Query: 87  SEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFK 146
           SE+     +  K+FIGGLS++TT + L+ +F ++G + DC +  DP T RSRGFGFV + 
Sbjct: 4   SESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYA 63

Query: 147 ESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKIRE 200
             E VD  M+ + HK++G+V++PKRA + +  +       VKKIFVGG+  DT E  +R+
Sbjct: 64  TVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRD 123

Query: 201 YFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 260
           YF  +G++E IE+  D  + K+RGF F+TF + + V KI+ +KYH V    CE++ A+SK
Sbjct: 124 YFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSK 183

Query: 261 EQY---QQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQGYGNYGYNSQGYGGYGG 317
           ++       Q+  S  G  G  RG G G + N+ +G  N+   G G +G  S+G GGYGG
Sbjct: 184 QEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRG-GNF--SGRGGFG-GSRGGGGYGG 239

Query: 318 Y--DYTGYNNYYGYG----DYSNQQSGYGKVSRRGGHQNS 351
               Y G+ N  GYG     YS    GYG   +  G+Q S
Sbjct: 240 SGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGS 279



 Score = 59.3 bits (142), Expect = 5e-09
 Identities = 31/95 (32%), Positives = 53/95 (55%)

Query: 171 RAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 230
           ++++ K  E ++K+F+GGLS +T +E +R +F  +G +    +  D  T + RGF F+T+
Sbjct: 3   KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62

Query: 231 KEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQ 265
              E V   M  + H V     E K A+S+E  Q+
Sbjct: 63  ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQR 97



 Score = 40.4 bits (93), Expect = 0.002
 Identities = 30/80 (37%), Positives = 36/80 (45%), Gaps = 6/80 (7%)

Query: 270 GSRGGFAGRARGR-GGGPSQN----WNQGYSNYWNQGYGNYGYNSQGYGGYGGYDYTGYN 324
           G  GGF G +    GGG S N    +N   SN+     GN+G  S G  G GG  +    
Sbjct: 293 GGGGGFGGGSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPR 352

Query: 325 NYYGYGDYSNQQSGYGKVSR 344
           N  GYG  S+  S YG   R
Sbjct: 353 NQGGYGG-SSSSSSYGSGRR 371



 Score = 30.4 bits (67), Expect = 2.5
 Identities = 24/78 (30%), Positives = 27/78 (34%), Gaps = 10/78 (12%)

Query: 6   FGGDGA-AAAATAAVGGSAGEQEGAMVAATQGAAAAA---------GSGAGTGGGTASGG 55
           FG DG          GGS G   G      QG+             G G G GGG+ S  
Sbjct: 247 FGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGGGSGSNF 306

Query: 56  TEGGSAESEGAKIDASKN 73
             GGS    G   + S N
Sbjct: 307 GGGGSYNDFGNYNNQSSN 324


>gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isoform
           B1 [Homo sapiens]
          Length = 353

 Score =  196 bits (498), Expect = 3e-50
 Identities = 115/321 (35%), Positives = 173/321 (53%), Gaps = 53/321 (16%)

Query: 88  EAATAQREEW-KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFK 146
           E    ++E++ K+FIGGLS++TT++ L++Y+ ++G++ DC +  DP + RSRGFGFV F 
Sbjct: 11  ERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFS 70

Query: 147 ESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP------VKKIFVGGLSPDTPEEKIRE 200
               VD  M  + H ++G+V++PKRA A +          VKK+FVGG+  DT E  +R+
Sbjct: 71  SMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRD 130

Query: 201 YFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 260
           YF  +G++++IE+  D ++ K+RGF F+TF + +PV KI+ +KYH +     E++ A+S+
Sbjct: 131 YFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSR 190

Query: 261 EQYQQ-QQQWGSRGGFAGRARGRGG------GPSQNWNQGYSNY-----WNQGYGNY--- 305
           ++ Q+ Q     RGG  G    RGG      GP  N+  G   Y     +  GY  Y   
Sbjct: 191 QEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGG 250

Query: 306 ------------------------GYNSQGYGGYGGYD-YTGYN----NYYGYGDYSNQQ 336
                                   GY +QG G  GGYD Y G N    NY  +G+Y+ Q 
Sbjct: 251 PGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQP 310

Query: 337 SGYG--KVSRRGGHQNSYKPY 355
           S YG  K    GG +N   PY
Sbjct: 311 SNYGPMKSGNFGGSRNMGGPY 331



 Score = 33.1 bits (74), Expect = 0.39
 Identities = 25/71 (35%), Positives = 30/71 (42%), Gaps = 10/71 (14%)

Query: 273 GGFAGRARGRGGG--------PSQNWNQGYSNYWNQGYGNYGYNSQGYGGYGGYDY--TG 322
           GG+ G     GGG           N+NQ  SNY     GN+G +    G YGG +Y   G
Sbjct: 281 GGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGG 340

Query: 323 YNNYYGYGDYS 333
                GYG  S
Sbjct: 341 SGGSGGYGGRS 351



 Score = 28.9 bits (63), Expect = 7.3
 Identities = 20/65 (30%), Positives = 23/65 (35%), Gaps = 3/65 (4%)

Query: 20  GGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGSAESEGAKIDASKNEEDEGH 79
           GG  G   G       G     G G G G     GG  GG  ++ G     S N  D G+
Sbjct: 249 GGPGGGNFGGSPGYGGGRGGYGGGGPGYGN---QGGGYGGGYDNYGGGNYGSGNYNDFGN 305

Query: 80  SNSSP 84
            N  P
Sbjct: 306 YNQQP 310


>gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform A2
           [Homo sapiens]
          Length = 341

 Score =  196 bits (497), Expect = 3e-50
 Identities = 113/310 (36%), Positives = 167/310 (53%), Gaps = 52/310 (16%)

Query: 98  KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
           K+FIGGLS++TT++ L++Y+ ++G++ DC +  DP + RSRGFGFV F     VD  M  
Sbjct: 10  KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69

Query: 158 KEHKLNGKVIDPKRAKAMKTKEP------VKKIFVGGLSPDTPEEKIREYFGGFGEVESI 211
           + H ++G+V++PKRA A +          VKK+FVGG+  DT E  +R+YF  +G++++I
Sbjct: 70  RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 129

Query: 212 ELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQ-QQQWG 270
           E+  D ++ K+RGF F+TF + +PV KI+ +KYH +     E++ A+S+++ Q+ Q    
Sbjct: 130 EIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRS 189

Query: 271 SRGGFAGRARGRGG------GPSQNWNQGYSNY-----WNQGYGNY-------------- 305
            RGG  G    RGG      GP  N+  G   Y     +  GY  Y              
Sbjct: 190 GRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGNFGGSPG 249

Query: 306 -------------GYNSQGYGGYGGYD-YTGYN----NYYGYGDYSNQQSGYG--KVSRR 345
                        GY +QG G  GGYD Y G N    NY  +G+Y+ Q S YG  K    
Sbjct: 250 YGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNF 309

Query: 346 GGHQNSYKPY 355
           GG +N   PY
Sbjct: 310 GGSRNMGGPY 319



 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 28/87 (32%), Positives = 49/87 (56%)

Query: 176 KTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEP 235
           + KE  +K+F+GGLS +T EE +R Y+  +G++    +  D  + + RGF F+TF     
Sbjct: 3   REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 62

Query: 236 VKKIMEKKYHNVGLSKCEIKVAMSKEQ 262
           V   M  + H++     E K A+++E+
Sbjct: 63  VDAAMAARPHSIDGRVVEPKRAVAREE 89



 Score = 33.1 bits (74), Expect = 0.39
 Identities = 25/71 (35%), Positives = 30/71 (42%), Gaps = 10/71 (14%)

Query: 273 GGFAGRARGRGGG--------PSQNWNQGYSNYWNQGYGNYGYNSQGYGGYGGYDY--TG 322
           GG+ G     GGG           N+NQ  SNY     GN+G +    G YGG +Y   G
Sbjct: 269 GGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGG 328

Query: 323 YNNYYGYGDYS 333
                GYG  S
Sbjct: 329 SGGSGGYGGRS 339



 Score = 28.9 bits (63), Expect = 7.3
 Identities = 20/65 (30%), Positives = 23/65 (35%), Gaps = 3/65 (4%)

Query: 20  GGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGSAESEGAKIDASKNEEDEGH 79
           GG  G   G       G     G G G G     GG  GG  ++ G     S N  D G+
Sbjct: 237 GGPGGGNFGGSPGYGGGRGGYGGGGPGYGN---QGGGYGGGYDNYGGGNYGSGNYNDFGN 293

Query: 80  SNSSP 84
            N  P
Sbjct: 294 YNQQP 298


>gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Homo
           sapiens]
          Length = 320

 Score =  195 bits (496), Expect = 5e-50
 Identities = 106/275 (38%), Positives = 160/275 (58%), Gaps = 17/275 (6%)

Query: 98  KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
           K+FIGGLS++TT + L+ +F ++G + DC +  DP T RSRGFGFV +   E VD  M+ 
Sbjct: 15  KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNT 74

Query: 158 KEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKIREYFGGFGEVESI 211
             HK++G+V++PKRA + +  +       VKKIFVGG+  DT E  +R+YF  +G++E I
Sbjct: 75  TPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 134

Query: 212 ELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQY--QQQQQW 269
           E+  D  + K+RGF F+TF + + V KI+ +KYH V    CE++ A+ K++       Q 
Sbjct: 135 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQEMASASSSQR 194

Query: 270 GSRG-GFAGRARGRGGGPSQNWNQGYSNYWNQGY------GNYGYNSQGYGGYG--GYDY 320
           G RG G  G  RG G G + N+ +G +     G+      G YG +  GY G+G  G ++
Sbjct: 195 GRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGGSGDGYNGFGNDGSNF 254

Query: 321 TGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY 355
            G  +Y  +G+Y+NQ S +G +        S  PY
Sbjct: 255 GGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPY 289



 Score = 57.8 bits (138), Expect = 1e-08
 Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 2/96 (2%)

Query: 172 AKAMKTKEP--VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 229
           +K+   KEP  ++K+F+GGLS +T +E +R +F  +G +    +  D  T + RGF F+T
Sbjct: 2   SKSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61

Query: 230 FKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQ 265
           +   E V   M    H V     E K A+S+E  Q+
Sbjct: 62  YATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQR 97


>gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Homo
           sapiens]
          Length = 320

 Score =  195 bits (496), Expect = 5e-50
 Identities = 106/275 (38%), Positives = 160/275 (58%), Gaps = 17/275 (6%)

Query: 98  KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
           K+FIGGLS++TT + L+ +F ++G + DC +  DP T RSRGFGFV +   E VD  M+ 
Sbjct: 15  KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNT 74

Query: 158 KEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKIREYFGGFGEVESI 211
             HK++G+V++PKRA + +  +       VKKIFVGG+  DT E  +R+YF  +G++E I
Sbjct: 75  TPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 134

Query: 212 ELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQY--QQQQQW 269
           E+  D  + K+RGF F+TF + + V KI+ +KYH V    CE++ A+ K++       Q 
Sbjct: 135 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQEMASASSSQR 194

Query: 270 GSRG-GFAGRARGRGGGPSQNWNQGYSNYWNQGY------GNYGYNSQGYGGYG--GYDY 320
           G RG G  G  RG G G + N+ +G +     G+      G YG +  GY G+G  G ++
Sbjct: 195 GRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGGSGDGYNGFGNDGSNF 254

Query: 321 TGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY 355
            G  +Y  +G+Y+NQ S +G +        S  PY
Sbjct: 255 GGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPY 289



 Score = 57.8 bits (138), Expect = 1e-08
 Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 2/96 (2%)

Query: 172 AKAMKTKEP--VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 229
           +K+   KEP  ++K+F+GGLS +T +E +R +F  +G +    +  D  T + RGF F+T
Sbjct: 2   SKSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61

Query: 230 FKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQ 265
           +   E V   M    H V     E K A+S+E  Q+
Sbjct: 62  YATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQR 97


>gi|89035135 PREDICTED: similar to heterogeneous nuclear
           ribonucleoprotein A1-like [Homo sapiens]
          Length = 321

 Score =  178 bits (451), Expect = 7e-45
 Identities = 99/277 (35%), Positives = 163/277 (58%), Gaps = 20/277 (7%)

Query: 87  SEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFK 146
           SE+    ++  K+FIGGL ++T+ + L+ +  ++G + +C +  DP T RSRGFGFV + 
Sbjct: 4   SESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYV 63

Query: 147 ESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKIRE 200
             E VD  M+ + HK+ G+V++PK A + +  +       VKKIFVGG+  DT E  +R+
Sbjct: 64  TVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPLRD 123

Query: 201 YFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 260
           Y+  +G+ E IE+  D  + K+R F F+TF   +   KI+ +KYH V    CE++ A+SK
Sbjct: 124 YYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKALSK 183

Query: 261 EQY----QQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWN--QGY-GNYGYNSQGYG 313
           ++       Q+     G F G   GRGGG S N N G+   ++   G+ G++G ++ GY 
Sbjct: 184 QKMASAPSSQRSRSGSGNFGG---GRGGGFSGNDNFGHGGNFSGCGGFGGSHGGSADGYN 240

Query: 314 GYG--GYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGH 348
           G+G  G ++ G ++Y  +G+ +NQ S +G +  +GG+
Sbjct: 241 GFGNDGKNFGGGSSYNDFGNCNNQSSNFGPM--KGGN 275



 Score = 55.8 bits (133), Expect = 6e-08
 Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 2/96 (2%)

Query: 172 AKAMKTKEP--VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 229
           +K+   KEP  ++K+F+GGL  +T +E +R +   +G +    +  D  TN+ RGF F+ 
Sbjct: 2   SKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVP 61

Query: 230 FKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQ 265
           +   E V   M  + H +G    E K A+S+E  Q+
Sbjct: 62  YVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQR 97


>gi|89034333 PREDICTED: similar to heterogeneous nuclear
           ribonucleoprotein A1-like [Homo sapiens]
          Length = 321

 Score =  178 bits (451), Expect = 7e-45
 Identities = 99/277 (35%), Positives = 163/277 (58%), Gaps = 20/277 (7%)

Query: 87  SEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFK 146
           SE+    ++  K+FIGGL ++T+ + L+ +  ++G + +C +  DP T RSRGFGFV + 
Sbjct: 4   SESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYV 63

Query: 147 ESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKIRE 200
             E VD  M+ + HK+ G+V++PK A + +  +       VKKIFVGG+  DT E  +R+
Sbjct: 64  TVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPLRD 123

Query: 201 YFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 260
           Y+  +G+ E IE+  D  + K+R F F+TF   +   KI+ +KYH V    CE++ A+SK
Sbjct: 124 YYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKALSK 183

Query: 261 EQY----QQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWN--QGY-GNYGYNSQGYG 313
           ++       Q+     G F G   GRGGG S N N G+   ++   G+ G++G ++ GY 
Sbjct: 184 QKMASAPSSQRSRSGSGNFGG---GRGGGFSGNDNFGHGGNFSGCGGFGGSHGGSADGYN 240

Query: 314 GYG--GYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGH 348
           G+G  G ++ G ++Y  +G+ +NQ S +G +  +GG+
Sbjct: 241 GFGNDGKNFGGGSSYNDFGNCNNQSSNFGPM--KGGN 275



 Score = 55.8 bits (133), Expect = 6e-08
 Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 2/96 (2%)

Query: 172 AKAMKTKEP--VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 229
           +K+   KEP  ++K+F+GGL  +T +E +R +   +G +    +  D  TN+ RGF F+ 
Sbjct: 2   SKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVP 61

Query: 230 FKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQ 265
           +   E V   M  + H +G    E K A+S+E  Q+
Sbjct: 62  YVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQR 97


>gi|169203146 PREDICTED: similar to heterogeneous nuclear
           ribonucleoprotein A1-like [Homo sapiens]
          Length = 321

 Score =  177 bits (450), Expect = 1e-44
 Identities = 100/277 (36%), Positives = 162/277 (58%), Gaps = 20/277 (7%)

Query: 87  SEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFK 146
           SE+    ++  K+FIGGL ++T+ + L+ +  ++G + +C +  DP T RSRGFGFV + 
Sbjct: 4   SESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYV 63

Query: 147 ESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKIRE 200
             E VD  M+ + HK+ G+V++PK A + +  +       VKKIFVGG+  DT E  +R+
Sbjct: 64  TVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPLRD 123

Query: 201 YFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 260
           Y+  +G+ E IE+  D  + K+R F F+TF   +   KI+ +KYH V    CE++ A+SK
Sbjct: 124 YYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKALSK 183

Query: 261 EQY----QQQQQWGSRGGFAGRARGRGGGPSQNWNQGY-SNYWNQG--YGNYGYNSQGYG 313
           ++       Q+     G F G   GRGGG S N N G+  N+   G   G++G ++ GY 
Sbjct: 184 QKMASAPSSQRSRSGSGNFGG---GRGGGFSGNDNFGHGGNFSGCGGLGGSHGGSADGYN 240

Query: 314 GYG--GYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGH 348
           G+G  G ++ G ++Y  +G+ +NQ S +G +  +GG+
Sbjct: 241 GFGNDGKNFGGGSSYNDFGNCNNQSSNFGPM--KGGN 275



 Score = 55.8 bits (133), Expect = 6e-08
 Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 2/96 (2%)

Query: 172 AKAMKTKEP--VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 229
           +K+   KEP  ++K+F+GGL  +T +E +R +   +G +    +  D  TN+ RGF F+ 
Sbjct: 2   SKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVP 61

Query: 230 FKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQ 265
           +   E V   M  + H +G    E K A+S+E  Q+
Sbjct: 62  YVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQR 97


>gi|20373175 musashi 2 isoform a [Homo sapiens]
          Length = 328

 Score =  171 bits (434), Expect = 7e-43
 Identities = 101/252 (40%), Positives = 130/252 (51%), Gaps = 19/252 (7%)

Query: 80  SNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRG 139
           + S      A  +Q +  KMFIGGLSW T+   L+DYFSKFGE+ +C +  DP T RSRG
Sbjct: 4   NGSQGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRG 63

Query: 140 FGFVLFKESESVDKVMDQKEHKLNGKVIDPK----RAKAMKTKEPVKKIFVGGLSPDTPE 195
           FGFV F +  SVDKV+ Q  H+L+ K IDPK    R    K     KKIFVGGLS +T  
Sbjct: 64  FGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVV 123

Query: 196 EKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIK 255
           E +++YF  FG+VE   L  D  TN+ RGF F+TF+ E+ V+K+ E  +H +     E K
Sbjct: 124 EDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECK 183

Query: 256 VAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQGYGN----YGYNSQG 311
            A  KE             F    RGR  G     +         GY N    YG    G
Sbjct: 184 KAQPKEVM-----------FPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRGYPG 232

Query: 312 YGGYGGYDYTGY 323
           +    GY + G+
Sbjct: 233 FAPSYGYQFPGF 244


>gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo
           sapiens]
          Length = 305

 Score =  168 bits (426), Expect = 6e-42
 Identities = 102/266 (38%), Positives = 139/266 (52%), Gaps = 15/266 (5%)

Query: 98  KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
           K+FIGGL+  T++  L+ +F  FG + DC + ++P T RSR FGFV +   E  D  M  
Sbjct: 8   KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67

Query: 158 KEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKIREYFGGFGEVESI 211
             H ++G  ++ KRA + +          VKK+FVGGL  D  E  + E+F  FG VE  
Sbjct: 68  SPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKA 127

Query: 212 ELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQ-YQQQQQWG 270
           E+  D ++ K+RGF F+ F+  +   K    K+H +   + E+K A+ KE  Y      G
Sbjct: 128 EIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIYSGGGGGG 187

Query: 271 SRGGFAGR-ARGRGGGPSQNWNQGYSNYWNQGYGNY-GYNSQGYGGYGGYDYTGYNNYYG 328
           SR    GR  RGRGGG  QN   G S     GY +Y GY   G GGY  Y   G  + YG
Sbjct: 188 SRSSRGGRGGRGRGGGRDQN---GLSKGGGGGYNSYGGYGGGGGGGYNAYGGGGGGSSYG 244

Query: 329 YGDYSNQQSGYGKVSRRGGHQNSYKP 354
             DY N   G+G  S+   HQ+SY P
Sbjct: 245 GSDYGNGFGGFGSYSQ---HQSSYGP 267



 Score = 28.9 bits (63), Expect = 7.3
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 5/60 (8%)

Query: 7   GGDGAAAAATAAVGG----SAGEQEGAMVAATQGAAAAAGSGAGTGGG-TASGGTEGGSA 61
           GG G + ++    GG       +Q G       G  +  G G G GGG  A GG  GGS+
Sbjct: 183 GGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYNAYGGGGGGSS 242


>gi|25121993 musashi 2 isoform b [Homo sapiens]
          Length = 251

 Score =  167 bits (424), Expect = 1e-41
 Identities = 98/234 (41%), Positives = 123/234 (52%), Gaps = 19/234 (8%)

Query: 98  KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
           KMFIGGLSW T+   L+DYFSKFGE+ +C +  DP T RSRGFGFV F +  SVDKV+ Q
Sbjct: 18  KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 77

Query: 158 KEHKLNGKVIDPK----RAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIEL 213
             H+L+ K IDPK    R    K     KKIFVGGLS +T  E +++YF  FG+VE   L
Sbjct: 78  PHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAML 137

Query: 214 PMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRG 273
             D  TN+ RGF F+TF+ E+ V+K+ E  +H +     E K A  KE            
Sbjct: 138 MFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVM---------- 187

Query: 274 GFAGRARGRGGGPSQNWNQGYSNYWNQGYGN----YGYNSQGYGGYGGYDYTGY 323
            F    RGR  G     +         GY N    YG    G+    GY +  Y
Sbjct: 188 -FPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRGYPGFAPSYGYQFPDY 240



 Score = 61.2 bits (147), Expect = 1e-09
 Identities = 28/81 (34%), Positives = 45/81 (55%)

Query: 180 PVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI 239
           P  K+F+GGLS  T  + +R+YF  FGE+    +  D  T + RGF F+TF +   V K+
Sbjct: 15  PSSKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKV 74

Query: 240 MEKKYHNVGLSKCEIKVAMSK 260
           + + +H +     + KVA  +
Sbjct: 75  LGQPHHELDSKTIDPKVAFPR 95


>gi|4505255 musashi 1 [Homo sapiens]
          Length = 362

 Score =  164 bits (416), Expect = 9e-41
 Identities = 98/236 (41%), Positives = 126/236 (53%), Gaps = 19/236 (8%)

Query: 98  KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
           KMFIGGLSW TT++ L++YF +FGEV +C +  DP+T RSRGFGFV F +   VDKV+ Q
Sbjct: 21  KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80

Query: 158 KEHKLNGKVIDPK----RAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIEL 213
             H+L+ K IDPK    R    K     KKIFVGGLS +T  E +++YF  FG+V+   L
Sbjct: 81  SRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAML 140

Query: 214 PMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRG 273
             D  TN+ RGF F+TF+ E+ V+K+ E  +H +     E K A  KE            
Sbjct: 141 MFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKEVMSP-------- 192

Query: 274 GFAGRARGRGGGPSQNWNQGYSNYWNQGYGNYGYNSQGYGGYGGYDYTGYNNYYGY 329
              G ARGR    S+    G   +   G G  GY       Y    YTG    Y Y
Sbjct: 193 --TGSARGR----SRVMPYGMDAFM-LGIGMLGYPGFQATTYASRSYTGLAPGYTY 241


>gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]
          Length = 378

 Score =  150 bits (380), Expect = 1e-36
 Identities = 92/245 (37%), Positives = 125/245 (51%), Gaps = 30/245 (12%)

Query: 98  KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
           K+F+GGL W TT++ L+ YFS++GEVVDC +  D  T +SRGFGFV FK+   V  V+  
Sbjct: 11  KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70

Query: 158 KEHKLNGKVIDPK------------RAKAMKTKEP------VKKIFVGGLSPDTPEEKIR 199
           + H L+G+ IDPK            R K    K P        KIFVGG+  +  E ++R
Sbjct: 71  RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELR 130

Query: 200 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMS 259
           EYF  FG V  + +  D +  + RGF FITF++E+ V + +   +H++   K E+K A  
Sbjct: 131 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEP 190

Query: 260 KEQYQQ------QQQWGSRGGFAGRARGRGGGPSQNWNQGY--SNYW---NQGYGNYGYN 308
           ++   Q        QWGSR      A G  G P   W QGY     W    Q  G YG  
Sbjct: 191 RDSKSQAPGQPGASQWGSR-VVPNAANGWAGQPPPTWQQGYGPQGMWVPAGQAIGGYGPP 249

Query: 309 SQGYG 313
             G G
Sbjct: 250 PAGRG 254



 Score = 55.8 bits (133), Expect = 6e-08
 Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 6/96 (6%)

Query: 179 EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 238
           + + K+FVGGL   T +E +R YF  +GEV    +  D  TN+ RGF F+ FK+   V  
Sbjct: 7   DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66

Query: 239 IMEKKYH-----NVGLSKCEIKVAMSKEQYQQQQQW 269
           ++  + H     N+    C  +  M  E+ + ++ W
Sbjct: 67  VLASRPHTLDGRNIDPKPCTPR-GMQPERTRPKEGW 101


>gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]
          Length = 407

 Score =  150 bits (380), Expect = 1e-36
 Identities = 92/245 (37%), Positives = 125/245 (51%), Gaps = 30/245 (12%)

Query: 98  KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
           K+F+GGL W TT++ L+ YFS++GEVVDC +  D  T +SRGFGFV FK+   V  V+  
Sbjct: 11  KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70

Query: 158 KEHKLNGKVIDPK------------RAKAMKTKEP------VKKIFVGGLSPDTPEEKIR 199
           + H L+G+ IDPK            R K    K P        KIFVGG+  +  E ++R
Sbjct: 71  RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELR 130

Query: 200 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMS 259
           EYF  FG V  + +  D +  + RGF FITF++E+ V + +   +H++   K E+K A  
Sbjct: 131 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEP 190

Query: 260 KEQYQQ------QQQWGSRGGFAGRARGRGGGPSQNWNQGY--SNYW---NQGYGNYGYN 308
           ++   Q        QWGSR      A G  G P   W QGY     W    Q  G YG  
Sbjct: 191 RDSKSQAPGQPGASQWGSR-VVPNAANGWAGQPPPTWQQGYGPQGMWVPAGQAIGGYGPP 249

Query: 309 SQGYG 313
             G G
Sbjct: 250 PAGRG 254



 Score = 55.8 bits (133), Expect = 6e-08
 Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 6/96 (6%)

Query: 179 EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 238
           + + K+FVGGL   T +E +R YF  +GEV    +  D  TN+ RGF F+ FK+   V  
Sbjct: 7   DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66

Query: 239 IMEKKYH-----NVGLSKCEIKVAMSKEQYQQQQQW 269
           ++  + H     N+    C  +  M  E+ + ++ W
Sbjct: 67  VLASRPHTLDGRNIDPKPCTPR-GMQPERTRPKEGW 101


>gi|6678271 TAR DNA binding protein [Homo sapiens]
          Length = 414

 Score =  117 bits (294), Expect = 1e-26
 Identities = 79/248 (31%), Positives = 133/248 (53%), Gaps = 19/248 (7%)

Query: 71  SKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKL 130
           +K + DE  ++S+ +   A     +   + + GL W TT++DLK+YFS FGEV+   +K 
Sbjct: 81  NKRKMDETDASSAVKVKRAVQKTSD---LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKK 137

Query: 131 DPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK-EPV--KKIFVG 187
           D  TG S+GFGFV F E E+  KVM Q+ H ++G+  D K   + +++ EP+  +K+FVG
Sbjct: 138 DLKTGHSKGFGFVRFTEYETQVKVMSQR-HMIDGRWCDCKLPNSKQSQDEPLRSRKVFVG 196

Query: 188 GLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK----K 243
             + D  E+++RE+F  +G+V  + +P        R F F+TF +++  + +  +    K
Sbjct: 197 RCTEDMTEDELREFFSQYGDVMDVFIP-----KPFRAFAFVTFADDQIAQSLCGEDLIIK 251

Query: 244 YHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGF---AGRARGRGGGPSQNWNQGYSNYWNQ 300
             +V +S  E K   +++  +  +  G+ GGF    G    RGGG     NQG +     
Sbjct: 252 GISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGLGNNQGSNMGGGM 311

Query: 301 GYGNYGYN 308
            +G +  N
Sbjct: 312 NFGAFSIN 319


>gi|55956788 nucleolin [Homo sapiens]
          Length = 710

 Score = 83.2 bits (204), Expect = 3e-16
 Identities = 74/272 (27%), Positives = 113/272 (41%), Gaps = 26/272 (9%)

Query: 62  ESEGAKIDA---SKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFS 118
           E +G +ID    S     E   N   R  + +T   E   + +  LS+  T++ L++ F 
Sbjct: 448 EKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFE 507

Query: 119 KFGEVVDCTLKLDPIT--GRSRGFGFVLFKESESVDKVMDQ-KEHKLNGKVI----DPKR 171
           K       T    P    G+S+G+ F+ F   E   + ++   + ++ G+ I       R
Sbjct: 508 K------ATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 561

Query: 172 AKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK 231
                  +P K +FV GLS DT EE ++E F G      +    D +T   +GF F+ F 
Sbjct: 562 GSPNARSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIV---TDRETGSSKGFGFVDFN 618

Query: 232 EEEPVKKIME-KKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNW 290
            EE  K   E  +   +  +K  +  A  K +     + G RGGF GR  GRGG      
Sbjct: 619 SEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGFGGRGGGRGGFGGRGGGRGG------ 672

Query: 291 NQGYSNYWNQGYGNYGYNSQGYGGYGGYDYTG 322
             G+      G+G  G    G GG G +   G
Sbjct: 673 RGGFGGRGRGGFGGRGGFRGGRGGGGDHKPQG 704


>gi|226497734 RNA binding motif protein 19 [Homo sapiens]
          Length = 960

 Score = 82.8 bits (203), Expect = 4e-16
 Identities = 60/202 (29%), Positives = 94/202 (46%), Gaps = 24/202 (11%)

Query: 72  KNEEDEGHSNSSPRHSEAATAQREEWK------MFIGGLSWDTTKKDLKDYFSKFGEVVD 125
           +N  +EG  NSS +  E    + EE +      +FI  L++DTT++ LK+ FSK G V  
Sbjct: 699 ENPTEEGADNSSAKMEEEEEEEEEEEESLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKS 758

Query: 126 CTL---KLDPITGRSRGFGFVLFKESESVDKVMDQKE------HKLNGKV--------ID 168
           C++   K       S GFGFV +++ E   K + Q +      HKL  ++        + 
Sbjct: 759 CSISKKKNKAGVLLSMGFGFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISERATKPAVT 818

Query: 169 PKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMD-NKTNKRRGFCF 227
             R K +  K+   KI V  +       +IRE F  FGE++++ LP     T   RGF F
Sbjct: 819 LARKKQVPRKQTTSKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGF 878

Query: 228 ITFKEEEPVKKIMEKKYHNVGL 249
           + F  ++  K+      H+  L
Sbjct: 879 VDFLTKQDAKRAFNALCHSTHL 900



 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 41/205 (20%), Positives = 76/205 (37%), Gaps = 31/205 (15%)

Query: 59  GSAESEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFS 118
           G+ + +G      +  E    +       E  T    + +    G  ++ T+K++ ++ +
Sbjct: 260 GAGQEQGMPAGKKRPPEARAETEKPANQKEPTTCHTVKLR----GAPFNVTEKNVMEFLA 315

Query: 119 KFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK 178
               V    ++     G   G+ FV F   E V + +      + G+ I+  R K + T 
Sbjct: 316 PLKPVAIRIVR--NAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKNVPTT 373

Query: 179 EPVKK-------------------------IFVGGLSPDTPEEKIREYFGGFGEVESIEL 213
           +   K                         +FV  L   + EE + + F  +G +  +  
Sbjct: 374 KGAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHY 433

Query: 214 PMDNKTNKRRGFCFITFKEEEPVKK 238
           P+D+ T K +GF FITF   E   K
Sbjct: 434 PIDSLTKKPKGFAFITFMFPEHAVK 458



 Score = 42.0 bits (97), Expect = 8e-04
 Identities = 18/63 (28%), Positives = 35/63 (55%)

Query: 95  EEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 154
           E  ++F+  L + +T++DL+  FSK+G + +    +D +T + +GF F+ F   E   K 
Sbjct: 400 ESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKA 459

Query: 155 MDQ 157
             +
Sbjct: 460 YSE 462



 Score = 35.0 bits (79), Expect = 0.10
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 5/74 (6%)

Query: 98  KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
           ++ +  L     ++  +  F+ FG + DC+LK     G+ R FGF+ FK  E   K    
Sbjct: 3   RLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTK-DGKFRKFGFIGFKSEEEAQKA--- 58

Query: 158 KEHKLNGKVIDPKR 171
            +   N   ID  R
Sbjct: 59  -QKHFNKSFIDTSR 71



 Score = 34.7 bits (78), Expect = 0.13
 Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 2/80 (2%)

Query: 181 VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 240
           + ++ V  L     EE+ R+ F  FG +    L    K  K R F FI FK EE  +K  
Sbjct: 1   MSRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKF-TKDGKFRKFGFIGFKSEEEAQK-A 58

Query: 241 EKKYHNVGLSKCEIKVAMSK 260
           +K ++   +    I V   K
Sbjct: 59  QKHFNKSFIDTSRITVEFCK 78


>gi|226497654 RNA binding motif protein 19 [Homo sapiens]
          Length = 960

 Score = 82.8 bits (203), Expect = 4e-16
 Identities = 60/202 (29%), Positives = 94/202 (46%), Gaps = 24/202 (11%)

Query: 72  KNEEDEGHSNSSPRHSEAATAQREEWK------MFIGGLSWDTTKKDLKDYFSKFGEVVD 125
           +N  +EG  NSS +  E    + EE +      +FI  L++DTT++ LK+ FSK G V  
Sbjct: 699 ENPTEEGADNSSAKMEEEEEEEEEEEESLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKS 758

Query: 126 CTL---KLDPITGRSRGFGFVLFKESESVDKVMDQKE------HKLNGKV--------ID 168
           C++   K       S GFGFV +++ E   K + Q +      HKL  ++        + 
Sbjct: 759 CSISKKKNKAGVLLSMGFGFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISERATKPAVT 818

Query: 169 PKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMD-NKTNKRRGFCF 227
             R K +  K+   KI V  +       +IRE F  FGE++++ LP     T   RGF F
Sbjct: 819 LARKKQVPRKQTTSKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGF 878

Query: 228 ITFKEEEPVKKIMEKKYHNVGL 249
           + F  ++  K+      H+  L
Sbjct: 879 VDFLTKQDAKRAFNALCHSTHL 900



 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 41/205 (20%), Positives = 76/205 (37%), Gaps = 31/205 (15%)

Query: 59  GSAESEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFS 118
           G+ + +G      +  E    +       E  T    + +    G  ++ T+K++ ++ +
Sbjct: 260 GAGQEQGMPAGKKRPPEARAETEKPANQKEPTTCHTVKLR----GAPFNVTEKNVMEFLA 315

Query: 119 KFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK 178
               V    ++     G   G+ FV F   E V + +      + G+ I+  R K + T 
Sbjct: 316 PLKPVAIRIVR--NAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKNVPTT 373

Query: 179 EPVKK-------------------------IFVGGLSPDTPEEKIREYFGGFGEVESIEL 213
           +   K                         +FV  L   + EE + + F  +G +  +  
Sbjct: 374 KGAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHY 433

Query: 214 PMDNKTNKRRGFCFITFKEEEPVKK 238
           P+D+ T K +GF FITF   E   K
Sbjct: 434 PIDSLTKKPKGFAFITFMFPEHAVK 458



 Score = 42.0 bits (97), Expect = 8e-04
 Identities = 18/63 (28%), Positives = 35/63 (55%)

Query: 95  EEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 154
           E  ++F+  L + +T++DL+  FSK+G + +    +D +T + +GF F+ F   E   K 
Sbjct: 400 ESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKA 459

Query: 155 MDQ 157
             +
Sbjct: 460 YSE 462



 Score = 35.0 bits (79), Expect = 0.10
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 5/74 (6%)

Query: 98  KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
           ++ +  L     ++  +  F+ FG + DC+LK     G+ R FGF+ FK  E   K    
Sbjct: 3   RLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTK-DGKFRKFGFIGFKSEEEAQKA--- 58

Query: 158 KEHKLNGKVIDPKR 171
            +   N   ID  R
Sbjct: 59  -QKHFNKSFIDTSR 71



 Score = 34.7 bits (78), Expect = 0.13
 Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 2/80 (2%)

Query: 181 VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 240
           + ++ V  L     EE+ R+ F  FG +    L    K  K R F FI FK EE  +K  
Sbjct: 1   MSRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKF-TKDGKFRKFGFIGFKSEEEAQK-A 58

Query: 241 EKKYHNVGLSKCEIKVAMSK 260
           +K ++   +    I V   K
Sbjct: 59  QKHFNKSFIDTSRITVEFCK 78


>gi|226497574 RNA binding motif protein 19 [Homo sapiens]
          Length = 960

 Score = 82.8 bits (203), Expect = 4e-16
 Identities = 60/202 (29%), Positives = 94/202 (46%), Gaps = 24/202 (11%)

Query: 72  KNEEDEGHSNSSPRHSEAATAQREEWK------MFIGGLSWDTTKKDLKDYFSKFGEVVD 125
           +N  +EG  NSS +  E    + EE +      +FI  L++DTT++ LK+ FSK G V  
Sbjct: 699 ENPTEEGADNSSAKMEEEEEEEEEEEESLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKS 758

Query: 126 CTL---KLDPITGRSRGFGFVLFKESESVDKVMDQKE------HKLNGKV--------ID 168
           C++   K       S GFGFV +++ E   K + Q +      HKL  ++        + 
Sbjct: 759 CSISKKKNKAGVLLSMGFGFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISERATKPAVT 818

Query: 169 PKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMD-NKTNKRRGFCF 227
             R K +  K+   KI V  +       +IRE F  FGE++++ LP     T   RGF F
Sbjct: 819 LARKKQVPRKQTTSKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGF 878

Query: 228 ITFKEEEPVKKIMEKKYHNVGL 249
           + F  ++  K+      H+  L
Sbjct: 879 VDFLTKQDAKRAFNALCHSTHL 900



 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 41/205 (20%), Positives = 76/205 (37%), Gaps = 31/205 (15%)

Query: 59  GSAESEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFS 118
           G+ + +G      +  E    +       E  T    + +    G  ++ T+K++ ++ +
Sbjct: 260 GAGQEQGMPAGKKRPPEARAETEKPANQKEPTTCHTVKLR----GAPFNVTEKNVMEFLA 315

Query: 119 KFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK 178
               V    ++     G   G+ FV F   E V + +      + G+ I+  R K + T 
Sbjct: 316 PLKPVAIRIVR--NAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKNVPTT 373

Query: 179 EPVKK-------------------------IFVGGLSPDTPEEKIREYFGGFGEVESIEL 213
           +   K                         +FV  L   + EE + + F  +G +  +  
Sbjct: 374 KGAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHY 433

Query: 214 PMDNKTNKRRGFCFITFKEEEPVKK 238
           P+D+ T K +GF FITF   E   K
Sbjct: 434 PIDSLTKKPKGFAFITFMFPEHAVK 458



 Score = 42.0 bits (97), Expect = 8e-04
 Identities = 18/63 (28%), Positives = 35/63 (55%)

Query: 95  EEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 154
           E  ++F+  L + +T++DL+  FSK+G + +    +D +T + +GF F+ F   E   K 
Sbjct: 400 ESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKA 459

Query: 155 MDQ 157
             +
Sbjct: 460 YSE 462



 Score = 35.0 bits (79), Expect = 0.10
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 5/74 (6%)

Query: 98  KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
           ++ +  L     ++  +  F+ FG + DC+LK     G+ R FGF+ FK  E   K    
Sbjct: 3   RLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTK-DGKFRKFGFIGFKSEEEAQKA--- 58

Query: 158 KEHKLNGKVIDPKR 171
            +   N   ID  R
Sbjct: 59  -QKHFNKSFIDTSR 71



 Score = 34.7 bits (78), Expect = 0.13
 Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 2/80 (2%)

Query: 181 VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 240
           + ++ V  L     EE+ R+ F  FG +    L    K  K R F FI FK EE  +K  
Sbjct: 1   MSRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKF-TKDGKFRKFGFIGFKSEEEAQK-A 58

Query: 241 EKKYHNVGLSKCEIKVAMSK 260
           +K ++   +    I V   K
Sbjct: 59  QKHFNKSFIDTSRITVEFCK 78


>gi|4502847 cold inducible RNA binding protein [Homo sapiens]
          Length = 172

 Score = 76.3 bits (186), Expect = 4e-14
 Identities = 57/176 (32%), Positives = 94/176 (53%), Gaps = 18/176 (10%)

Query: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
           K+FVGGLS DT E+ + + F  +G++  + +  D +T + RGF F+TF+  +  K  M  
Sbjct: 7   KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM-M 65

Query: 243 KYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFA-GRARGRGG-GPSQNWNQGYSNYWNQ 300
             +   +   +I+V  + +    + + G RGG A GR   RGG G  + +++G     ++
Sbjct: 66  AMNGKSVDGRQIRVDQAGKSSDNRSR-GYRGGSAGGRGFFRGGRGRGRGFSRGGG---DR 121

Query: 301 GYGNYGYNSQGYGGYGG-YDYTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY 355
           GYG   + S+  GGYGG  DY  Y++    G YS++ SG       G +++SY  Y
Sbjct: 122 GYGGNRFESRS-GGYGGSRDY--YSSRSQSGGYSDRSSG-------GSYRDSYDSY 167



 Score = 62.8 bits (151), Expect = 5e-10
 Identities = 32/79 (40%), Positives = 51/79 (64%), Gaps = 4/79 (5%)

Query: 95  EEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 154
           +E K+F+GGLS+DT ++ L+  FSK+G++ +  +  D  T RSRGFGFV F   E++D  
Sbjct: 4   DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTF---ENIDDA 60

Query: 155 MDQKEHKLNGKVIDPKRAK 173
            D     +NGK +D ++ +
Sbjct: 61  KDAM-MAMNGKSVDGRQIR 78


>gi|5803137 RNA binding motif protein 3 [Homo sapiens]
          Length = 157

 Score = 74.7 bits (182), Expect = 1e-13
 Identities = 53/157 (33%), Positives = 78/157 (49%), Gaps = 19/157 (12%)

Query: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
           K+FVGGL+ +T E+ + ++F  FG +  + +  D +T + RGF FITF   E     M +
Sbjct: 7   KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAM-R 65

Query: 243 KYHNVGLSKCEIKVAMSKEQYQQQQQWGSR-GGFAGRARGRG---GGPSQNWNQGYSNYW 298
             +   L   +I+V      +  +   G+R GGF    RGR    GG  Q +  G   Y+
Sbjct: 66  AMNGESLDGRQIRV-----DHAGKSARGTRGGGFGAHGRGRSYSRGGGDQGYGSG--RYY 118

Query: 299 NQGYGNYGYNSQGYG---GYGGYDYTGYNNYYGYGDY 332
           +   G YGY   GYG    Y G +  GY+ Y G G+Y
Sbjct: 119 DSRPGGYGY---GYGRSRDYNGRNQGGYDRYSG-GNY 151



 Score = 59.3 bits (142), Expect = 5e-09
 Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 4/79 (5%)

Query: 95  EEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 154
           EE K+F+GGL+++T ++ L+D+FS FG + +  +  D  T RSRGFGF+ F   E     
Sbjct: 4   EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVA 63

Query: 155 MDQKEHKLNGKVIDPKRAK 173
           M      +NG+ +D ++ +
Sbjct: 64  M----RAMNGESLDGRQIR 78


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.310    0.131    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,240,278
Number of Sequences: 37866
Number of extensions: 795994
Number of successful extensions: 13491
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 367
Number of HSP's that attempted gapping in prelim test: 5995
Number of HSP's gapped (non-prelim): 4523
length of query: 355
length of database: 18,247,518
effective HSP length: 103
effective length of query: 252
effective length of database: 14,347,320
effective search space: 3615524640
effective search space used: 3615524640
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 62 (28.5 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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