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Search of human proteins with 14110417
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b
[Homo sapiens]
(336 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b ... 699 0.0
gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a ... 687 0.0
gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d ... 556 e-158
gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c ... 544 e-155
gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform ... 416 e-116
gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo... 411 e-115
gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform ... 340 1e-93
gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a ... 202 3e-52
gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b... 201 8e-52
gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo sap... 199 2e-51
gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isofor... 198 6e-51
gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Hom... 197 8e-51
gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Hom... 197 8e-51
gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform... 197 1e-50
gi|89035135 PREDICTED: similar to heterogeneous nuclear ribonucl... 179 4e-45
gi|89034333 PREDICTED: similar to heterogeneous nuclear ribonucl... 179 4e-45
gi|20373175 musashi 2 isoform a [Homo sapiens] 179 4e-45
gi|169203146 PREDICTED: similar to heterogeneous nuclear ribonuc... 178 5e-45
gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo sapi... 168 5e-42
gi|25121993 musashi 2 isoform b [Homo sapiens] 167 9e-42
gi|4505255 musashi 1 [Homo sapiens] 165 5e-41
gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens] 153 2e-37
gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens] 153 2e-37
gi|6678271 TAR DNA binding protein [Homo sapiens] 115 4e-26
gi|226497734 RNA binding motif protein 19 [Homo sapiens] 81 1e-15
gi|226497654 RNA binding motif protein 19 [Homo sapiens] 81 1e-15
gi|226497574 RNA binding motif protein 19 [Homo sapiens] 81 1e-15
gi|55956788 nucleolin [Homo sapiens] 80 3e-15
gi|4502847 cold inducible RNA binding protein [Homo sapiens] 76 4e-14
gi|5803137 RNA binding motif protein 3 [Homo sapiens] 75 1e-13
>gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b
[Homo sapiens]
Length = 336
Score = 699 bits (1803), Expect = 0.0
Identities = 336/336 (100%), Positives = 336/336 (100%)
Query: 1 MSEEQFGGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGS 60
MSEEQFGGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGS
Sbjct: 1 MSEEQFGGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGS 60
Query: 61 AESEGAKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRG 120
AESEGAKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRG
Sbjct: 61 AESEGAKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRG 120
Query: 121 FGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIR 180
FGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIR
Sbjct: 121 FGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIR 180
Query: 181 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMS 240
EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMS
Sbjct: 181 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMS 240
Query: 241 KEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQGYGNYGYNSQGYGGYGGYD 300
KEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQGYGNYGYNSQGYGGYGGYD
Sbjct: 241 KEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQGYGNYGYNSQGYGGYGGYD 300
Query: 301 YTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY 336
YTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY
Sbjct: 301 YTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY 336
>gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a
[Homo sapiens]
Length = 355
Score = 687 bits (1773), Expect = 0.0
Identities = 336/355 (94%), Positives = 336/355 (94%), Gaps = 19/355 (5%)
Query: 1 MSEEQFGGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGS 60
MSEEQFGGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGS
Sbjct: 1 MSEEQFGGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGS 60
Query: 61 AESEGAKIDASKNEEDEG-------------------KMFIGGLSWDTTKKDLKDYFSKF 101
AESEGAKIDASKNEEDEG KMFIGGLSWDTTKKDLKDYFSKF
Sbjct: 61 AESEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKF 120
Query: 102 GEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP 161
GEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP
Sbjct: 121 GEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP 180
Query: 162 VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 221
VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM
Sbjct: 181 VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 240
Query: 222 EKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQ 281
EKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQ
Sbjct: 241 EKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQ 300
Query: 282 GYGNYGYNSQGYGGYGGYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY 336
GYGNYGYNSQGYGGYGGYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY
Sbjct: 301 GYGNYGYNSQGYGGYGGYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY 355
>gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d
[Homo sapiens]
Length = 287
Score = 556 bits (1432), Expect = e-158
Identities = 286/336 (85%), Positives = 287/336 (85%), Gaps = 49/336 (14%)
Query: 1 MSEEQFGGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGS 60
MSEEQFGGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGS
Sbjct: 1 MSEEQFGGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGS 60
Query: 61 AESEGAKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRG 120
AESEGAKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRG
Sbjct: 61 AESEGAKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRG 120
Query: 121 FGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIR 180
FGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIR
Sbjct: 121 FGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIR 180
Query: 181 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMS 240
EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMS
Sbjct: 181 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMS 240
Query: 241 KEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQGYGNYGYNSQGYGGYGGYD 300
KEQYQQQQQWGSRGGFAGRARGRGG
Sbjct: 241 KEQYQQQQQWGSRGGFAGRARGRGG----------------------------------- 265
Query: 301 YTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY 336
+QQSGYGKVSRRGGHQNSYKPY
Sbjct: 266 --------------DQQSGYGKVSRRGGHQNSYKPY 287
>gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c
[Homo sapiens]
Length = 306
Score = 544 bits (1402), Expect = e-155
Identities = 286/355 (80%), Positives = 287/355 (80%), Gaps = 68/355 (19%)
Query: 1 MSEEQFGGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGS 60
MSEEQFGGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGS
Sbjct: 1 MSEEQFGGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGS 60
Query: 61 AESEGAKIDASKNEEDEG-------------------KMFIGGLSWDTTKKDLKDYFSKF 101
AESEGAKIDASKNEEDEG KMFIGGLSWDTTKKDLKDYFSKF
Sbjct: 61 AESEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKF 120
Query: 102 GEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP 161
GEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP
Sbjct: 121 GEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP 180
Query: 162 VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 221
VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM
Sbjct: 181 VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 240
Query: 222 EKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQ 281
EKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGG
Sbjct: 241 EKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGG---------------- 284
Query: 282 GYGNYGYNSQGYGGYGGYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY 336
+QQSGYGKVSRRGGHQNSYKPY
Sbjct: 285 ---------------------------------DQQSGYGKVSRRGGHQNSYKPY 306
>gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform a
[Homo sapiens]
Length = 332
Score = 416 bits (1068), Expect = e-116
Identities = 215/329 (65%), Positives = 251/329 (76%), Gaps = 22/329 (6%)
Query: 22 SAGEQEGAMVAATQGAA-AAAGSGAGTGGGTASGGTEGGSAE-SEGAKIDASKNEEDEGK 79
+ G E A +G + A AG+GA G G A+ G+ +EG +I+ASKNEED GK
Sbjct: 12 TTGATENGHEAVPEGESPAGAGTGAAAGAGGATAAPPSGNQNGAEGDQINASKNEEDAGK 71
Query: 80 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 139
MF+GGLSWDT+KKDLKDYF+KFGEVVDCT+K+DP TGRSRGFGF+LFK++ SV+KV+DQK
Sbjct: 72 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 131
Query: 140 EHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNK 199
EH+L+G+VIDPK+A AMK K+PVKKIFVGGL+P+ EEKIREYFG FGE+E+IELPMD K
Sbjct: 132 EHRLDGRVIDPKKAMAMK-KDPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPK 190
Query: 200 TNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGR 259
NKRRGF FITFKEEEPVKK++EKK+H V SKCEIKVA KE Y QQQQ+GS GG R
Sbjct: 191 LNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVY-QQQQYGS-GGRGNR 248
Query: 260 ARGR--------GGGPSQNWNQGYSNYWNQGYGNYGYNSQGYG-GYGGYDYTGYNNYYGY 310
RG GGG SQ+WNQGY NYWNQGYG QGYG GYGGYDY+ Y YYGY
Sbjct: 249 NRGNRGSGGGGGGGGQSQSWNQGYGNYWNQGYG----YQQGYGPGYGGYDYSPY-GYYGY 303
Query: 311 G---DYSNQQSGYGKVSRRGGHQNSYKPY 336
G DYS + YGK RRGGHQN+YKPY
Sbjct: 304 GPGYDYSQGSTNYGKSQRRGGHQNNYKPY 332
>gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo
sapiens]
Length = 420
Score = 411 bits (1056), Expect = e-115
Identities = 199/288 (69%), Positives = 235/288 (81%), Gaps = 14/288 (4%)
Query: 63 SEGAKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 122
+EG+KI+ASKN++D+GKMFIGGLSWDT+KKDL +Y S+FGEVVDCT+K DP+TGRSRGFG
Sbjct: 133 AEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFG 192
Query: 123 FVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREY 182
FVLFK++ SVDKV++ KEHKL+GK+IDPKRAKA+K KEP KK+FVGGLSPDT EE+I+EY
Sbjct: 193 FVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEY 252
Query: 183 FGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKE 242
FG FGE+E+IELPMD KTN+RRGFCFIT+ +EEPVKK++E +YH +G KCEIKVA KE
Sbjct: 253 FGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 312
Query: 243 QY--QQQQQWGSRG---GFAGRARGRGGGPSQNWNQGYSNYWNQGYGNYGY---NSQGYG 294
Y QQQQQ G RG G G RGRG G QNWNQG++NY++QGYGNY Q Y
Sbjct: 313 VYRQQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGGDQNYS 372
Query: 295 GYGGYDYTGYN--NY---YGYGDYSNQQSGYGKVSRRGG-HQNSYKPY 336
GYGGYDYTGYN NY GY DYS QQS YGK SR GG HQN+Y+PY
Sbjct: 373 GYGGYDYTGYNYGNYGYGQGYADYSGQQSTYGKASRGGGNHQNNYQPY 420
Score = 61.6 bits (148), Expect = 9e-10
Identities = 31/92 (33%), Positives = 49/92 (53%)
Query: 137 DQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 196
D E+ + + + A K ++ K+F+GGLS DT ++ + EY FGEV +
Sbjct: 122 DMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKT 181
Query: 197 DNKTNKRRGFCFITFKEEEPVKKIMEKKYHNV 228
D T + RGF F+ FK+ V K++E K H +
Sbjct: 182 DPVTGRSRGFGFVLFKDAASVDKVLELKEHKL 213
>gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform b
[Homo sapiens]
Length = 285
Score = 340 bits (872), Expect = 1e-93
Identities = 181/317 (57%), Positives = 216/317 (68%), Gaps = 45/317 (14%)
Query: 22 SAGEQEGAMVAATQGAA-AAAGSGAGTGGGTASGGTEGGSAE-SEGAKIDASKNEEDEGK 79
+ G E A +G + A AG+GA G G A+ G+ +EG +I+ASKNEED GK
Sbjct: 12 TTGATENGHEAVPEGESPAGAGTGAAAGAGGATAAPPSGNQNGAEGDQINASKNEEDAGK 71
Query: 80 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 139
MF+GGLSWDT+KKDLKDYF+KFGEVVDCT+K+DP TGRSRGFGF+LFK++ SV+KV+DQK
Sbjct: 72 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 131
Query: 140 EHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNK 199
EH+L+G+VIDPK+A AMK K+PVKKIFVGGL+P+ EEKIREYFG FGE+E+IELPMD K
Sbjct: 132 EHRLDGRVIDPKKAMAMK-KDPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPK 190
Query: 200 TNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGR 259
NKRRGF FITFKEEEPVKK++EKK+H V SKCEIKVA KE YQQQQ
Sbjct: 191 LNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQ----------- 239
Query: 260 ARGRGGGPSQNWNQGYSNYWNQGYGNYGYNSQGYGGYGGYDYTGYNNYYGYGDYSNQQSG 319
Y + G GN ++G GG GG G NY
Sbjct: 240 ------------------YGSGGRGNRNRGNRGSGGGGGGGGQGSTNY------------ 269
Query: 320 YGKVSRRGGHQNSYKPY 336
GK RRGGHQN+YKPY
Sbjct: 270 -GKSQRRGGHQNNYKPY 285
>gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a
[Homo sapiens]
Length = 320
Score = 202 bits (515), Expect = 3e-52
Identities = 109/289 (37%), Positives = 169/289 (58%), Gaps = 19/289 (6%)
Query: 66 AKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVL 125
+K ++ K E K+FIGGLS++TT + L+ +F ++G + DC + DP T RSRGFGFV
Sbjct: 2 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Query: 126 FKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKI 179
+ E VD M+ + HK++G+V++PKRA + + + VKKIFVGG+ DT E +
Sbjct: 62 YATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHL 121
Query: 180 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAM 239
R+YF +G++E IE+ D + K+RGF F+TF + + V KI+ +KYH V CE++ A+
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181
Query: 240 SKEQY---QQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNY-------WNQGYGNYGYN 289
SK++ Q+ S G G RG G G + N+ +G N+ ++G G YG +
Sbjct: 182 SKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRG-GNFSGRGGFGGSRGGGGYGGS 240
Query: 290 SQGYGGYG--GYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY 336
GY G+G G ++ G +Y +G+Y+NQ S +G + S PY
Sbjct: 241 GDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPY 289
>gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b
[Homo sapiens]
Length = 372
Score = 201 bits (511), Expect = 8e-52
Identities = 113/282 (40%), Positives = 166/282 (58%), Gaps = 19/282 (6%)
Query: 66 AKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVL 125
+K ++ K E K+FIGGLS++TT + L+ +F ++G + DC + DP T RSRGFGFV
Sbjct: 2 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Query: 126 FKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKI 179
+ E VD M+ + HK++G+V++PKRA + + + VKKIFVGG+ DT E +
Sbjct: 62 YATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHL 121
Query: 180 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAM 239
R+YF +G++E IE+ D + K+RGF F+TF + + V KI+ +KYH V CE++ A+
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181
Query: 240 SKEQY---QQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQGYGNYGYNSQGYGGY 296
SK++ Q+ S G G RG G G + N+ +G N+ G G +G S+G GGY
Sbjct: 182 SKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRG-GNF--SGRGGFG-GSRGGGGY 237
Query: 297 GGY--DYTGYNNYYGYG----DYSNQQSGYGKVSRRGGHQNS 332
GG Y G+ N GYG YS GYG + G+Q S
Sbjct: 238 GGSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGS 279
Score = 40.4 bits (93), Expect = 0.002
Identities = 30/80 (37%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 251 GSRGGFAGRARGR-GGGPSQN----WNQGYSNYWNQGYGNYGYNSQGYGGYGGYDYTGYN 305
G GGF G + GGG S N +N SN+ GN+G S G G GG +
Sbjct: 293 GGGGGFGGGSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPR 352
Query: 306 NYYGYGDYSNQQSGYGKVSR 325
N GYG S+ S YG R
Sbjct: 353 NQGGYGG-SSSSSSYGSGRR 371
Score = 30.4 bits (67), Expect = 2.3
Identities = 24/78 (30%), Positives = 27/78 (34%), Gaps = 10/78 (12%)
Query: 6 FGGDGA-AAAATAAVGGSAGEQEGAMVAATQGAAAAA---------GSGAGTGGGTASGG 55
FG DG GGS G G QG+ G G G GGG+ S
Sbjct: 247 FGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGGGSGSNF 306
Query: 56 TEGGSAESEGAKIDASKN 73
GGS G + S N
Sbjct: 307 GGGGSYNDFGNYNNQSSN 324
>gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo
sapiens]
Length = 378
Score = 199 bits (507), Expect = 2e-51
Identities = 112/276 (40%), Positives = 160/276 (57%), Gaps = 26/276 (9%)
Query: 72 KNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESES 131
K E K+FIGGLS++TT L+++F K+G + DC + DP T RSRGFGFV + E
Sbjct: 29 KEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEE 88
Query: 132 VDKVMDQKEHKLNGKVIDPKRAKAMKTKEP------VKKIFVGGLSPDTPEEKIREYFGG 185
VD M + HK++G+V++PKRA + + VKKIFVGG+ DT E +R+YF
Sbjct: 89 VDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEK 148
Query: 186 FGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQ 245
+G++E+IE+ D ++ K+RGF F+TF + + V KI+ +KYH + CE+K A+SK++ Q
Sbjct: 149 YGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQ 208
Query: 246 QQQQWGSRGGFAGRARGRG---GGPSQNWNQGYSNYWNQGY--------GNYGYNSQGYG 294
RGG +G GRG GG N+ +G + GY G+YG GY
Sbjct: 209 SAGSQRGRGGGSGNFMGRGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYGGGDGGYN 268
Query: 295 GYG--GYDY---TGYNNYYGYG----DYSNQQSGYG 321
G+G G +Y GY++ GYG Y NQ GYG
Sbjct: 269 GFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYG 304
Score = 29.3 bits (64), Expect = 5.2
Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 254 GGFAGRARGRGGGPSQNWN---QGYSNYWNQGYGNYGYNSQGYGGYGGYDYTGYNNYYG 309
G F G G GG + N Q SNY G++G S G GGY G + YG
Sbjct: 316 GNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGSGGYG 374
Score = 28.9 bits (63), Expect = 6.8
Identities = 16/53 (30%), Positives = 22/53 (41%)
Query: 7 GGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGG 59
GG+ G +G+Q+ G+ SG+ GGG SGG GG
Sbjct: 320 GGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGSGG 372
>gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isoform
B1 [Homo sapiens]
Length = 353
Score = 198 bits (503), Expect = 6e-51
Identities = 116/326 (35%), Positives = 175/326 (53%), Gaps = 53/326 (16%)
Query: 64 EGAKIDASKNEEDE-GKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 122
E ++ K E+++ K+FIGGLS++TT++ L++Y+ ++G++ DC + DP + RSRGFG
Sbjct: 6 ETVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFG 65
Query: 123 FVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP------VKKIFVGGLSPDTPE 176
FV F VD M + H ++G+V++PKRA A + VKK+FVGG+ DT E
Sbjct: 66 FVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEE 125
Query: 177 EKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIK 236
+R+YF +G++++IE+ D ++ K+RGF F+TF + +PV KI+ +KYH + E++
Sbjct: 126 HHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVR 185
Query: 237 VAMSKEQYQQ-QQQWGSRGGFAGRARGRGG------GPSQNWNQGYSNY-----WNQGYG 284
A+S+++ Q+ Q RGG G RGG GP N+ G Y + GY
Sbjct: 186 KALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYN 245
Query: 285 NY---------------------------GYNSQGYGGYGGYD-YTGYN----NYYGYGD 312
Y GY +QG G GGYD Y G N NY +G+
Sbjct: 246 GYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGN 305
Query: 313 YSNQQSGYG--KVSRRGGHQNSYKPY 336
Y+ Q S YG K GG +N PY
Sbjct: 306 YNQQPSNYGPMKSGNFGGSRNMGGPY 331
Score = 33.1 bits (74), Expect = 0.36
Identities = 25/71 (35%), Positives = 30/71 (42%), Gaps = 10/71 (14%)
Query: 254 GGFAGRARGRGGG--------PSQNWNQGYSNYWNQGYGNYGYNSQGYGGYGGYDY--TG 303
GG+ G GGG N+NQ SNY GN+G + G YGG +Y G
Sbjct: 281 GGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGG 340
Query: 304 YNNYYGYGDYS 314
GYG S
Sbjct: 341 SGGSGGYGGRS 351
>gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Homo
sapiens]
Length = 320
Score = 197 bits (502), Expect = 8e-51
Identities = 109/288 (37%), Positives = 165/288 (57%), Gaps = 17/288 (5%)
Query: 66 AKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVL 125
+K + K E K+FIGGLS++TT + L+ +F ++G + DC + DP T RSRGFGFV
Sbjct: 2 SKSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Query: 126 FKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKI 179
+ E VD M+ HK++G+V++PKRA + + + VKKIFVGG+ DT E +
Sbjct: 62 YATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHL 121
Query: 180 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAM 239
R+YF +G++E IE+ D + K+RGF F+TF + + V KI+ +KYH V CE++ A+
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKAL 181
Query: 240 SKEQY--QQQQQWGSRG-GFAGRARGRGGGPSQNWNQGYSNYWNQGY------GNYGYNS 290
K++ Q G RG G G RG G G + N+ +G + G+ G YG +
Sbjct: 182 PKQEMASASSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGGSG 241
Query: 291 QGYGGYG--GYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY 336
GY G+G G ++ G +Y +G+Y+NQ S +G + S PY
Sbjct: 242 DGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPY 289
>gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Homo
sapiens]
Length = 320
Score = 197 bits (502), Expect = 8e-51
Identities = 109/288 (37%), Positives = 165/288 (57%), Gaps = 17/288 (5%)
Query: 66 AKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVL 125
+K + K E K+FIGGLS++TT + L+ +F ++G + DC + DP T RSRGFGFV
Sbjct: 2 SKSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Query: 126 FKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKI 179
+ E VD M+ HK++G+V++PKRA + + + VKKIFVGG+ DT E +
Sbjct: 62 YATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHL 121
Query: 180 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAM 239
R+YF +G++E IE+ D + K+RGF F+TF + + V KI+ +KYH V CE++ A+
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKAL 181
Query: 240 SKEQY--QQQQQWGSRG-GFAGRARGRGGGPSQNWNQGYSNYWNQGY------GNYGYNS 290
K++ Q G RG G G RG G G + N+ +G + G+ G YG +
Sbjct: 182 PKQEMASASSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGGSG 241
Query: 291 QGYGGYG--GYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY 336
GY G+G G ++ G +Y +G+Y+NQ S +G + S PY
Sbjct: 242 DGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPY 289
>gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform A2
[Homo sapiens]
Length = 341
Score = 197 bits (500), Expect = 1e-50
Identities = 114/317 (35%), Positives = 170/317 (53%), Gaps = 52/317 (16%)
Query: 72 KNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESES 131
+ +E K+FIGGLS++TT++ L++Y+ ++G++ DC + DP + RSRGFGFV F
Sbjct: 3 REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 62
Query: 132 VDKVMDQKEHKLNGKVIDPKRAKAMKTKEP------VKKIFVGGLSPDTPEEKIREYFGG 185
VD M + H ++G+V++PKRA A + VKK+FVGG+ DT E +R+YF
Sbjct: 63 VDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEE 122
Query: 186 FGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQ 245
+G++++IE+ D ++ K+RGF F+TF + +PV KI+ +KYH + E++ A+S+++ Q
Sbjct: 123 YGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 182
Query: 246 Q-QQQWGSRGGFAGRARGRGG------GPSQNWNQGYSNY-----WNQGYGNY------- 286
+ Q RGG G RGG GP N+ G Y + GY Y
Sbjct: 183 EVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGG 242
Query: 287 --------------------GYNSQGYGGYGGYD-YTGYN----NYYGYGDYSNQQSGYG 321
GY +QG G GGYD Y G N NY +G+Y+ Q S YG
Sbjct: 243 NFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYG 302
Query: 322 --KVSRRGGHQNSYKPY 336
K GG +N PY
Sbjct: 303 PMKSGNFGGSRNMGGPY 319
Score = 33.1 bits (74), Expect = 0.36
Identities = 25/71 (35%), Positives = 30/71 (42%), Gaps = 10/71 (14%)
Query: 254 GGFAGRARGRGGG--------PSQNWNQGYSNYWNQGYGNYGYNSQGYGGYGGYDY--TG 303
GG+ G GGG N+NQ SNY GN+G + G YGG +Y G
Sbjct: 269 GGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGG 328
Query: 304 YNNYYGYGDYS 314
GYG S
Sbjct: 329 SGGSGGYGGRS 339
>gi|89035135 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein A1-like [Homo sapiens]
Length = 321
Score = 179 bits (453), Expect = 4e-45
Identities = 99/279 (35%), Positives = 164/279 (58%), Gaps = 20/279 (7%)
Query: 66 AKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVL 125
+K ++ K + K+FIGGL ++T+ + L+ + ++G + +C + DP T RSRGFGFV
Sbjct: 2 SKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVP 61
Query: 126 FKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKI 179
+ E VD M+ + HK+ G+V++PK A + + + VKKIFVGG+ DT E +
Sbjct: 62 YVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPL 121
Query: 180 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAM 239
R+Y+ +G+ E IE+ D + K+R F F+TF + KI+ +KYH V CE++ A+
Sbjct: 122 RDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKAL 181
Query: 240 SKEQY----QQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWN--QGY-GNYGYNSQG 292
SK++ Q+ G F G GRGGG S N N G+ ++ G+ G++G ++ G
Sbjct: 182 SKQKMASAPSSQRSRSGSGNFGG---GRGGGFSGNDNFGHGGNFSGCGGFGGSHGGSADG 238
Query: 293 YGGYG--GYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGH 329
Y G+G G ++ G ++Y +G+ +NQ S +G + +GG+
Sbjct: 239 YNGFGNDGKNFGGGSSYNDFGNCNNQSSNFGPM--KGGN 275
>gi|89034333 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein A1-like [Homo sapiens]
Length = 321
Score = 179 bits (453), Expect = 4e-45
Identities = 99/279 (35%), Positives = 164/279 (58%), Gaps = 20/279 (7%)
Query: 66 AKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVL 125
+K ++ K + K+FIGGL ++T+ + L+ + ++G + +C + DP T RSRGFGFV
Sbjct: 2 SKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVP 61
Query: 126 FKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKI 179
+ E VD M+ + HK+ G+V++PK A + + + VKKIFVGG+ DT E +
Sbjct: 62 YVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPL 121
Query: 180 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAM 239
R+Y+ +G+ E IE+ D + K+R F F+TF + KI+ +KYH V CE++ A+
Sbjct: 122 RDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKAL 181
Query: 240 SKEQY----QQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWN--QGY-GNYGYNSQG 292
SK++ Q+ G F G GRGGG S N N G+ ++ G+ G++G ++ G
Sbjct: 182 SKQKMASAPSSQRSRSGSGNFGG---GRGGGFSGNDNFGHGGNFSGCGGFGGSHGGSADG 238
Query: 293 YGGYG--GYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGH 329
Y G+G G ++ G ++Y +G+ +NQ S +G + +GG+
Sbjct: 239 YNGFGNDGKNFGGGSSYNDFGNCNNQSSNFGPM--KGGN 275
>gi|20373175 musashi 2 isoform a [Homo sapiens]
Length = 328
Score = 179 bits (453), Expect = 4e-45
Identities = 103/250 (41%), Positives = 133/250 (53%), Gaps = 19/250 (7%)
Query: 63 SEGAKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 122
S+G A+ ++ D GKMFIGGLSW T+ L+DYFSKFGE+ +C + DP T RSRGFG
Sbjct: 6 SQGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFG 65
Query: 123 FVLFKESESVDKVMDQKEHKLNGKVIDPK----RAKAMKTKEPVKKIFVGGLSPDTPEEK 178
FV F + SVDKV+ Q H+L+ K IDPK R K KKIFVGGLS +T E
Sbjct: 66 FVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVED 125
Query: 179 IREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 238
+++YF FG+VE L D TN+ RGF F+TF+ E+ V+K+ E +H + E K A
Sbjct: 126 VKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKA 185
Query: 239 MSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQGYGN----YGYNSQGYG 294
KE F RGR G + GY N YG G+
Sbjct: 186 QPKEVM-----------FPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRGYPGFA 234
Query: 295 GYGGYDYTGY 304
GY + G+
Sbjct: 235 PSYGYQFPGF 244
>gi|169203146 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein A1-like [Homo sapiens]
Length = 321
Score = 178 bits (452), Expect = 5e-45
Identities = 100/279 (35%), Positives = 163/279 (58%), Gaps = 20/279 (7%)
Query: 66 AKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVL 125
+K ++ K + K+FIGGL ++T+ + L+ + ++G + +C + DP T RSRGFGFV
Sbjct: 2 SKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVP 61
Query: 126 FKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKI 179
+ E VD M+ + HK+ G+V++PK A + + + VKKIFVGG+ DT E +
Sbjct: 62 YVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPL 121
Query: 180 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAM 239
R+Y+ +G+ E IE+ D + K+R F F+TF + KI+ +KYH V CE++ A+
Sbjct: 122 RDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKAL 181
Query: 240 SKEQY----QQQQQWGSRGGFAGRARGRGGGPSQNWNQGY-SNYWNQG--YGNYGYNSQG 292
SK++ Q+ G F G GRGGG S N N G+ N+ G G++G ++ G
Sbjct: 182 SKQKMASAPSSQRSRSGSGNFGG---GRGGGFSGNDNFGHGGNFSGCGGLGGSHGGSADG 238
Query: 293 YGGYG--GYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGH 329
Y G+G G ++ G ++Y +G+ +NQ S +G + +GG+
Sbjct: 239 YNGFGNDGKNFGGGSSYNDFGNCNNQSSNFGPM--KGGN 275
>gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo
sapiens]
Length = 305
Score = 168 bits (426), Expect = 5e-42
Identities = 102/266 (38%), Positives = 139/266 (52%), Gaps = 15/266 (5%)
Query: 79 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 138
K+FIGGL+ T++ L+ +F FG + DC + ++P T RSR FGFV + E D M
Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67
Query: 139 KEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKIREYFGGFGEVESI 192
H ++G ++ KRA + + VKK+FVGGL D E + E+F FG VE
Sbjct: 68 SPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKA 127
Query: 193 ELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQ-YQQQQQWG 251
E+ D ++ K+RGF F+ F+ + K K+H + + E+K A+ KE Y G
Sbjct: 128 EIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIYSGGGGGG 187
Query: 252 SRGGFAGR-ARGRGGGPSQNWNQGYSNYWNQGYGNY-GYNSQGYGGYGGYDYTGYNNYYG 309
SR GR RGRGGG QN G S GY +Y GY G GGY Y G + YG
Sbjct: 188 SRSSRGGRGGRGRGGGRDQN---GLSKGGGGGYNSYGGYGGGGGGGYNAYGGGGGGSSYG 244
Query: 310 YGDYSNQQSGYGKVSRRGGHQNSYKP 335
DY N G+G S+ HQ+SY P
Sbjct: 245 GSDYGNGFGGFGSYSQ---HQSSYGP 267
Score = 28.9 bits (63), Expect = 6.8
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Query: 7 GGDGAAAAATAAVGG----SAGEQEGAMVAATQGAAAAAGSGAGTGGG-TASGGTEGGSA 61
GG G + ++ GG +Q G G + G G G GGG A GG GGS+
Sbjct: 183 GGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYNAYGGGGGGSS 242
>gi|25121993 musashi 2 isoform b [Homo sapiens]
Length = 251
Score = 167 bits (424), Expect = 9e-42
Identities = 98/234 (41%), Positives = 123/234 (52%), Gaps = 19/234 (8%)
Query: 79 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 138
KMFIGGLSW T+ L+DYFSKFGE+ +C + DP T RSRGFGFV F + SVDKV+ Q
Sbjct: 18 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 77
Query: 139 KEHKLNGKVIDPK----RAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIEL 194
H+L+ K IDPK R K KKIFVGGLS +T E +++YF FG+VE L
Sbjct: 78 PHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAML 137
Query: 195 PMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRG 254
D TN+ RGF F+TF+ E+ V+K+ E +H + E K A KE
Sbjct: 138 MFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVM---------- 187
Query: 255 GFAGRARGRGGGPSQNWNQGYSNYWNQGYGN----YGYNSQGYGGYGGYDYTGY 304
F RGR G + GY N YG G+ GY + Y
Sbjct: 188 -FPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRGYPGFAPSYGYQFPDY 240
Score = 61.2 bits (147), Expect = 1e-09
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 161 PVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI 220
P K+F+GGLS T + +R+YF FGE+ + D T + RGF F+TF + V K+
Sbjct: 15 PSSKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKV 74
Query: 221 MEKKYHNVGLSKCEIKVAMSK 241
+ + +H + + KVA +
Sbjct: 75 LGQPHHELDSKTIDPKVAFPR 95
>gi|4505255 musashi 1 [Homo sapiens]
Length = 362
Score = 165 bits (418), Expect = 5e-41
Identities = 99/239 (41%), Positives = 127/239 (53%), Gaps = 19/239 (7%)
Query: 76 DEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 135
D KMFIGGLSW TT++ L++YF +FGEV +C + DP+T RSRGFGFV F + VDKV
Sbjct: 18 DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV 77
Query: 136 MDQKEHKLNGKVIDPK----RAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVES 191
+ Q H+L+ K IDPK R K KKIFVGGLS +T E +++YF FG+V+
Sbjct: 78 LAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDD 137
Query: 192 IELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQWG 251
L D TN+ RGF F+TF+ E+ V+K+ E +H + E K A KE
Sbjct: 138 AMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKEVMSP----- 192
Query: 252 SRGGFAGRARGRGGGPSQNWNQGYSNYWNQGYGNYGYNSQGYGGYGGYDYTGYNNYYGY 310
G ARGR S+ G + G G GY Y YTG Y Y
Sbjct: 193 -----TGSARGR----SRVMPYGMDAFM-LGIGMLGYPGFQATTYASRSYTGLAPGYTY 241
>gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]
Length = 378
Score = 153 bits (387), Expect = 2e-37
Identities = 93/249 (37%), Positives = 128/249 (51%), Gaps = 30/249 (12%)
Query: 75 EDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDK 134
++ GK+F+GGL W TT++ L+ YFS++GEVVDC + D T +SRGFGFV FK+ V
Sbjct: 7 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66
Query: 135 VMDQKEHKLNGKVIDPK------------RAKAMKTKEP------VKKIFVGGLSPDTPE 176
V+ + H L+G+ IDPK R K K P KIFVGG+ + E
Sbjct: 67 VLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGE 126
Query: 177 EKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIK 236
++REYF FG V + + D + + RGF FITF++E+ V + + +H++ K E+K
Sbjct: 127 TELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 186
Query: 237 VAMSKEQYQQ------QQQWGSRGGFAGRARGRGGGPSQNWNQGY--SNYW---NQGYGN 285
A ++ Q QWGSR A G G P W QGY W Q G
Sbjct: 187 RAEPRDSKSQAPGQPGASQWGSR-VVPNAANGWAGQPPPTWQQGYGPQGMWVPAGQAIGG 245
Query: 286 YGYNSQGYG 294
YG G G
Sbjct: 246 YGPPPAGRG 254
Score = 68.2 bits (165), Expect = 1e-11
Identities = 33/96 (34%), Positives = 58/96 (60%), Gaps = 4/96 (4%)
Query: 64 EGAKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGF 123
+G + D SK+ K+F+GG+ + + +L++YF KFG V + + D R RGFGF
Sbjct: 103 KGPRSDNSKSN----KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGF 158
Query: 124 VLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK 159
+ F++ +SVD+ ++ H + GK ++ KRA+ +K
Sbjct: 159 ITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSK 194
>gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]
Length = 407
Score = 153 bits (387), Expect = 2e-37
Identities = 93/249 (37%), Positives = 128/249 (51%), Gaps = 30/249 (12%)
Query: 75 EDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDK 134
++ GK+F+GGL W TT++ L+ YFS++GEVVDC + D T +SRGFGFV FK+ V
Sbjct: 7 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66
Query: 135 VMDQKEHKLNGKVIDPK------------RAKAMKTKEP------VKKIFVGGLSPDTPE 176
V+ + H L+G+ IDPK R K K P KIFVGG+ + E
Sbjct: 67 VLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGE 126
Query: 177 EKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIK 236
++REYF FG V + + D + + RGF FITF++E+ V + + +H++ K E+K
Sbjct: 127 TELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 186
Query: 237 VAMSKEQYQQ------QQQWGSRGGFAGRARGRGGGPSQNWNQGY--SNYW---NQGYGN 285
A ++ Q QWGSR A G G P W QGY W Q G
Sbjct: 187 RAEPRDSKSQAPGQPGASQWGSR-VVPNAANGWAGQPPPTWQQGYGPQGMWVPAGQAIGG 245
Query: 286 YGYNSQGYG 294
YG G G
Sbjct: 246 YGPPPAGRG 254
Score = 68.2 bits (165), Expect = 1e-11
Identities = 33/96 (34%), Positives = 58/96 (60%), Gaps = 4/96 (4%)
Query: 64 EGAKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGF 123
+G + D SK+ K+F+GG+ + + +L++YF KFG V + + D R RGFGF
Sbjct: 103 KGPRSDNSKSN----KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGF 158
Query: 124 VLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK 159
+ F++ +SVD+ ++ H + GK ++ KRA+ +K
Sbjct: 159 ITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSK 194
>gi|6678271 TAR DNA binding protein [Homo sapiens]
Length = 414
Score = 115 bits (289), Expect = 4e-26
Identities = 74/220 (33%), Positives = 121/220 (55%), Gaps = 16/220 (7%)
Query: 80 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 139
+ + GL W TT++DLK+YFS FGEV+ +K D TG S+GFGFV F E E+ KVM Q+
Sbjct: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQR 165
Query: 140 EHKLNGKVIDPKRAKAMKTK-EPV--KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 196
H ++G+ D K + +++ EP+ +K+FVG + D E+++RE+F +G+V + +P
Sbjct: 166 -HMIDGRWCDCKLPNSKQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIP- 223
Query: 197 DNKTNKRRGFCFITFKEEEPVKKIMEK----KYHNVGLSKCEIKVAMSKEQYQQQQQWGS 252
R F F+TF +++ + + + K +V +S E K +++ + + G+
Sbjct: 224 ----KPFRAFAFVTFADDQIAQSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGN 279
Query: 253 RGGF---AGRARGRGGGPSQNWNQGYSNYWNQGYGNYGYN 289
GGF G RGGG NQG + +G + N
Sbjct: 280 PGGFGNQGGFGNSRGGGAGLGNNQGSNMGGGMNFGAFSIN 319
Score = 60.8 bits (146), Expect = 2e-09
Identities = 40/117 (34%), Positives = 62/117 (52%), Gaps = 6/117 (5%)
Query: 146 KVIDPKRAKAMKTKEPVKK---IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNK 202
K+ + + A+K K V+K + V GL T E+ ++EYF FGEV +++ D KT
Sbjct: 84 KMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGH 143
Query: 203 RRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGR 259
+GF F+ F E E K+M ++ H + C+ K+ SK+ Q + SR F GR
Sbjct: 144 SKGFGFVRFTEYETQVKVMSQR-HMIDGRWCDCKLPNSKQ--SQDEPLRSRKVFVGR 197
Score = 43.9 bits (102), Expect = 2e-04
Identities = 64/263 (24%), Positives = 96/263 (36%), Gaps = 50/263 (19%)
Query: 67 KIDASKNEEDEG----KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 122
K+ SK +DE K+F+G + D T+ +L+++FS++G+V+D I R F
Sbjct: 176 KLPNSKQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVF-----IPKPFRAFA 230
Query: 123 FVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREY 182
FV F + + + + L K I + A +++ G P +
Sbjct: 231 FVTFADDQIAQSLCGE---DLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQ- 286
Query: 183 FGGFGEVESIELPMDNK--TNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMS 240
GGFG + N +N G F F + M+
Sbjct: 287 -GGFGNSRGGGAGLGNNQGSNMGGGMNFGAFSINPAM---------------------MA 324
Query: 241 KEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQGYGNYGYNSQGYGGYGGYD 300
Q Q WG G A ++ GPS N NQ GN G G
Sbjct: 325 AAQAALQSSWGMMGMLA--SQQNQSGPSGN---------NQNQGNMQREPNQAFGSGNNS 373
Query: 301 YTGYNN--YYGYGDYSNQQSGYG 321
Y+G N+ G+G SN SG G
Sbjct: 374 YSGSNSGAAIGWGSASNAGSGSG 396
>gi|226497734 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 81.3 bits (199), Expect = 1e-15
Identities = 60/200 (30%), Positives = 96/200 (48%), Gaps = 26/200 (13%)
Query: 56 TEGGSAESEGAKIDASKNEEDEGK-------MFIGGLSWDTTKKDLKDYFSKFGEVVDCT 108
TE G A++ AK++ + EE+E + +FI L++DTT++ LK+ FSK G V C+
Sbjct: 702 TEEG-ADNSSAKMEEEEEEEEEEEESLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCS 760
Query: 109 L---KLDPITGRSRGFGFVLFKESESVDKVMDQKE------HKLNGKV--------IDPK 151
+ K S GFGFV +++ E K + Q + HKL ++ +
Sbjct: 761 ISKKKNKAGVLLSMGFGFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISERATKPAVTLA 820
Query: 152 RAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMD-NKTNKRRGFCFIT 210
R K + K+ KI V + +IRE F FGE++++ LP T RGF F+
Sbjct: 821 RKKQVPRKQTTSKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVD 880
Query: 211 FKEEEPVKKIMEKKYHNVGL 230
F ++ K+ H+ L
Sbjct: 881 FLTKQDAKRAFNALCHSTHL 900
Score = 54.3 bits (129), Expect = 2e-07
Identities = 51/224 (22%), Positives = 86/224 (38%), Gaps = 29/224 (12%)
Query: 21 GSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGSAESEGAKIDASKNEEDEGKM 80
GS E+E + +AT GAG G +G A +E K K +
Sbjct: 239 GSEAEEEDS--SATPVLQERDSKGAGQEQGMPAGKKRPPEARAETEKPANQKEPTTCHTV 296
Query: 81 FIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKE 140
+ G ++ T+K++ ++ + V ++ G G+ FV F E V + +
Sbjct: 297 KLRGAPFNVTEKNVMEFLAPLKPVAIRIVR--NAHGNKTGYIFVDFSNEEEVKQALKCNR 354
Query: 141 HKLNGKVIDPKRAKAMKTKEPVKK-------------------------IFVGGLSPDTP 175
+ G+ I+ R K + T + K +FV L +
Sbjct: 355 EYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLPYTST 414
Query: 176 EEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 219
EE + + F +G + + P+D+ T K +GF FITF E K
Sbjct: 415 EEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVK 458
Score = 48.5 bits (114), Expect = 8e-06
Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 51 TASGGTEGGSAESEGAKIDASKNEED---EGKMFIGGLSWDTTKKDLKDYFSKFGEVVDC 107
T G + + +G + ++ EED G++F+ L + +T++DL+ FSK+G + +
Sbjct: 372 TTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSEL 431
Query: 108 TLKLDPITGRSRGFGFVLFKESESVDKVMDQ 138
+D +T + +GF F+ F E K +
Sbjct: 432 HYPIDSLTKKPKGFAFITFMFPEHAVKAYSE 462
Score = 35.0 bits (79), Expect = 0.095
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 79 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 138
++ + L ++ + F+ FG + DC+LK G+ R FGF+ FK E K
Sbjct: 3 RLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTK-DGKFRKFGFIGFKSEEEAQKA--- 58
Query: 139 KEHKLNGKVIDPKR 152
+ N ID R
Sbjct: 59 -QKHFNKSFIDTSR 71
Score = 34.7 bits (78), Expect = 0.12
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Query: 162 VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 221
+ ++ V L EE+ R+ F FG + L K K R F FI FK EE +K
Sbjct: 1 MSRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKF-TKDGKFRKFGFIGFKSEEEAQK-A 58
Query: 222 EKKYHNVGLSKCEIKVAMSK 241
+K ++ + I V K
Sbjct: 59 QKHFNKSFIDTSRITVEFCK 78
>gi|226497654 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 81.3 bits (199), Expect = 1e-15
Identities = 60/200 (30%), Positives = 96/200 (48%), Gaps = 26/200 (13%)
Query: 56 TEGGSAESEGAKIDASKNEEDEGK-------MFIGGLSWDTTKKDLKDYFSKFGEVVDCT 108
TE G A++ AK++ + EE+E + +FI L++DTT++ LK+ FSK G V C+
Sbjct: 702 TEEG-ADNSSAKMEEEEEEEEEEEESLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCS 760
Query: 109 L---KLDPITGRSRGFGFVLFKESESVDKVMDQKE------HKLNGKV--------IDPK 151
+ K S GFGFV +++ E K + Q + HKL ++ +
Sbjct: 761 ISKKKNKAGVLLSMGFGFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISERATKPAVTLA 820
Query: 152 RAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMD-NKTNKRRGFCFIT 210
R K + K+ KI V + +IRE F FGE++++ LP T RGF F+
Sbjct: 821 RKKQVPRKQTTSKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVD 880
Query: 211 FKEEEPVKKIMEKKYHNVGL 230
F ++ K+ H+ L
Sbjct: 881 FLTKQDAKRAFNALCHSTHL 900
Score = 54.3 bits (129), Expect = 2e-07
Identities = 51/224 (22%), Positives = 86/224 (38%), Gaps = 29/224 (12%)
Query: 21 GSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGSAESEGAKIDASKNEEDEGKM 80
GS E+E + +AT GAG G +G A +E K K +
Sbjct: 239 GSEAEEEDS--SATPVLQERDSKGAGQEQGMPAGKKRPPEARAETEKPANQKEPTTCHTV 296
Query: 81 FIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKE 140
+ G ++ T+K++ ++ + V ++ G G+ FV F E V + +
Sbjct: 297 KLRGAPFNVTEKNVMEFLAPLKPVAIRIVR--NAHGNKTGYIFVDFSNEEEVKQALKCNR 354
Query: 141 HKLNGKVIDPKRAKAMKTKEPVKK-------------------------IFVGGLSPDTP 175
+ G+ I+ R K + T + K +FV L +
Sbjct: 355 EYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLPYTST 414
Query: 176 EEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 219
EE + + F +G + + P+D+ T K +GF FITF E K
Sbjct: 415 EEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVK 458
Score = 48.5 bits (114), Expect = 8e-06
Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 51 TASGGTEGGSAESEGAKIDASKNEED---EGKMFIGGLSWDTTKKDLKDYFSKFGEVVDC 107
T G + + +G + ++ EED G++F+ L + +T++DL+ FSK+G + +
Sbjct: 372 TTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSEL 431
Query: 108 TLKLDPITGRSRGFGFVLFKESESVDKVMDQ 138
+D +T + +GF F+ F E K +
Sbjct: 432 HYPIDSLTKKPKGFAFITFMFPEHAVKAYSE 462
Score = 35.0 bits (79), Expect = 0.095
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 79 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 138
++ + L ++ + F+ FG + DC+LK G+ R FGF+ FK E K
Sbjct: 3 RLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTK-DGKFRKFGFIGFKSEEEAQKA--- 58
Query: 139 KEHKLNGKVIDPKR 152
+ N ID R
Sbjct: 59 -QKHFNKSFIDTSR 71
Score = 34.7 bits (78), Expect = 0.12
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Query: 162 VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 221
+ ++ V L EE+ R+ F FG + L K K R F FI FK EE +K
Sbjct: 1 MSRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKF-TKDGKFRKFGFIGFKSEEEAQK-A 58
Query: 222 EKKYHNVGLSKCEIKVAMSK 241
+K ++ + I V K
Sbjct: 59 QKHFNKSFIDTSRITVEFCK 78
>gi|226497574 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 81.3 bits (199), Expect = 1e-15
Identities = 60/200 (30%), Positives = 96/200 (48%), Gaps = 26/200 (13%)
Query: 56 TEGGSAESEGAKIDASKNEEDEGK-------MFIGGLSWDTTKKDLKDYFSKFGEVVDCT 108
TE G A++ AK++ + EE+E + +FI L++DTT++ LK+ FSK G V C+
Sbjct: 702 TEEG-ADNSSAKMEEEEEEEEEEEESLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCS 760
Query: 109 L---KLDPITGRSRGFGFVLFKESESVDKVMDQKE------HKLNGKV--------IDPK 151
+ K S GFGFV +++ E K + Q + HKL ++ +
Sbjct: 761 ISKKKNKAGVLLSMGFGFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISERATKPAVTLA 820
Query: 152 RAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMD-NKTNKRRGFCFIT 210
R K + K+ KI V + +IRE F FGE++++ LP T RGF F+
Sbjct: 821 RKKQVPRKQTTSKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVD 880
Query: 211 FKEEEPVKKIMEKKYHNVGL 230
F ++ K+ H+ L
Sbjct: 881 FLTKQDAKRAFNALCHSTHL 900
Score = 54.3 bits (129), Expect = 2e-07
Identities = 51/224 (22%), Positives = 86/224 (38%), Gaps = 29/224 (12%)
Query: 21 GSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGSAESEGAKIDASKNEEDEGKM 80
GS E+E + +AT GAG G +G A +E K K +
Sbjct: 239 GSEAEEEDS--SATPVLQERDSKGAGQEQGMPAGKKRPPEARAETEKPANQKEPTTCHTV 296
Query: 81 FIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKE 140
+ G ++ T+K++ ++ + V ++ G G+ FV F E V + +
Sbjct: 297 KLRGAPFNVTEKNVMEFLAPLKPVAIRIVR--NAHGNKTGYIFVDFSNEEEVKQALKCNR 354
Query: 141 HKLNGKVIDPKRAKAMKTKEPVKK-------------------------IFVGGLSPDTP 175
+ G+ I+ R K + T + K +FV L +
Sbjct: 355 EYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLPYTST 414
Query: 176 EEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 219
EE + + F +G + + P+D+ T K +GF FITF E K
Sbjct: 415 EEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVK 458
Score = 48.5 bits (114), Expect = 8e-06
Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 51 TASGGTEGGSAESEGAKIDASKNEED---EGKMFIGGLSWDTTKKDLKDYFSKFGEVVDC 107
T G + + +G + ++ EED G++F+ L + +T++DL+ FSK+G + +
Sbjct: 372 TTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSEL 431
Query: 108 TLKLDPITGRSRGFGFVLFKESESVDKVMDQ 138
+D +T + +GF F+ F E K +
Sbjct: 432 HYPIDSLTKKPKGFAFITFMFPEHAVKAYSE 462
Score = 35.0 bits (79), Expect = 0.095
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 79 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 138
++ + L ++ + F+ FG + DC+LK G+ R FGF+ FK E K
Sbjct: 3 RLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTK-DGKFRKFGFIGFKSEEEAQKA--- 58
Query: 139 KEHKLNGKVIDPKR 152
+ N ID R
Sbjct: 59 -QKHFNKSFIDTSR 71
Score = 34.7 bits (78), Expect = 0.12
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Query: 162 VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 221
+ ++ V L EE+ R+ F FG + L K K R F FI FK EE +K
Sbjct: 1 MSRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKF-TKDGKFRKFGFIGFKSEEEAQK-A 58
Query: 222 EKKYHNVGLSKCEIKVAMSK 241
+K ++ + I V K
Sbjct: 59 QKHFNKSFIDTSRITVEFCK 78
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 79.7 bits (195), Expect = 3e-15
Identities = 69/257 (26%), Positives = 107/257 (41%), Gaps = 25/257 (9%)
Query: 55 GTEGGSAESEGAKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPI 114
G +G + + G K E + + LS+ T++ L++ F K T P
Sbjct: 465 GEKGQNQDYRGGKNSTWSGESKT--LVLSNLSYSATEETLQEVFEK------ATFIKVPQ 516
Query: 115 T--GRSRGFGFVLFKESESVDKVMDQ-KEHKLNGKVI----DPKRAKAMKTKEPVKKIFV 167
G+S+G+ F+ F E + ++ + ++ G+ I R +P K +FV
Sbjct: 517 NQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFV 576
Query: 168 GGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYH 226
GLS DT EE ++E F G + D +T +GF F+ F EE K E +
Sbjct: 577 KGLSEDTTEETLKESFDGSVRARIV---TDRETGSSKGFGFVDFNSEEDAKAAKEAMEDG 633
Query: 227 NVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQGYGNY 286
+ +K + A K + + G RGGF GR GRGG G+ G+G
Sbjct: 634 EIDGNKVTLDWAKPKGEGGFGGRGGGRGGFGGRGGGRGG------RGGFGGRGRGGFGGR 687
Query: 287 GYNSQGYGGYGGYDYTG 303
G G GG G + G
Sbjct: 688 GGFRGGRGGGGDHKPQG 704
Score = 49.3 bits (116), Expect = 5e-06
Identities = 42/177 (23%), Positives = 75/177 (42%), Gaps = 22/177 (12%)
Query: 58 GGSAESEGAKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGR 117
G + E K SK E D + L + T+ +LK+ F E+ +L G+
Sbjct: 373 GNEIKLEKPKGKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEI-----RLVSKDGK 427
Query: 118 SRGFGFVLFKESESVDKVMDQKE-HKLNGKVI------------DPKRAKAMKTKEPVKK 164
S+G ++ FK +K ++K+ +++G+ I D + K K
Sbjct: 428 SKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKT 487
Query: 165 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 221
+ + LS EE ++E F + I++P N+ K +G+ FI F E K+ +
Sbjct: 488 LVLSNLSYSATEETLQEV---FEKATFIKVP-QNQNGKSKGYAFIEFASFEDAKEAL 540
>gi|4502847 cold inducible RNA binding protein [Homo sapiens]
Length = 172
Score = 76.3 bits (186), Expect = 4e-14
Identities = 57/176 (32%), Positives = 94/176 (53%), Gaps = 18/176 (10%)
Query: 164 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 223
K+FVGGLS DT E+ + + F +G++ + + D +T + RGF F+TF+ + K M
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM-M 65
Query: 224 KYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFA-GRARGRGG-GPSQNWNQGYSNYWNQ 281
+ + +I+V + + + + G RGG A GR RGG G + +++G ++
Sbjct: 66 AMNGKSVDGRQIRVDQAGKSSDNRSR-GYRGGSAGGRGFFRGGRGRGRGFSRGGG---DR 121
Query: 282 GYGNYGYNSQGYGGYGG-YDYTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY 336
GYG + S+ GGYGG DY Y++ G YS++ SG G +++SY Y
Sbjct: 122 GYGGNRFESRS-GGYGGSRDY--YSSRSQSGGYSDRSSG-------GSYRDSYDSY 167
Score = 67.4 bits (163), Expect = 2e-11
Identities = 34/79 (43%), Positives = 52/79 (65%), Gaps = 4/79 (5%)
Query: 76 DEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 135
DEGK+F+GGLS+DT ++ L+ FSK+G++ + + D T RSRGFGFV F E++D
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTF---ENIDDA 60
Query: 136 MDQKEHKLNGKVIDPKRAK 154
D +NGK +D ++ +
Sbjct: 61 KDAM-MAMNGKSVDGRQIR 78
>gi|5803137 RNA binding motif protein 3 [Homo sapiens]
Length = 157
Score = 74.7 bits (182), Expect = 1e-13
Identities = 53/157 (33%), Positives = 78/157 (49%), Gaps = 19/157 (12%)
Query: 164 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 223
K+FVGGL+ +T E+ + ++F FG + + + D +T + RGF FITF E M +
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAM-R 65
Query: 224 KYHNVGLSKCEIKVAMSKEQYQQQQQWGSR-GGFAGRARGRG---GGPSQNWNQGYSNYW 279
+ L +I+V + + G+R GGF RGR GG Q + G Y+
Sbjct: 66 AMNGESLDGRQIRV-----DHAGKSARGTRGGGFGAHGRGRSYSRGGGDQGYGSG--RYY 118
Query: 280 NQGYGNYGYNSQGYG---GYGGYDYTGYNNYYGYGDY 313
+ G YGY GYG Y G + GY+ Y G G+Y
Sbjct: 119 DSRPGGYGY---GYGRSRDYNGRNQGGYDRYSG-GNY 151
Score = 61.2 bits (147), Expect = 1e-09
Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 4/79 (5%)
Query: 76 DEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 135
+EGK+F+GGL+++T ++ L+D+FS FG + + + D T RSRGFGF+ F E
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVA 63
Query: 136 MDQKEHKLNGKVIDPKRAK 154
M +NG+ +D ++ +
Sbjct: 64 M----RAMNGESLDGRQIR 78
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.133 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,357,444
Number of Sequences: 37866
Number of extensions: 754964
Number of successful extensions: 12708
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 306
Number of HSP's that attempted gapping in prelim test: 5628
Number of HSP's gapped (non-prelim): 4274
length of query: 336
length of database: 18,247,518
effective HSP length: 103
effective length of query: 233
effective length of database: 14,347,320
effective search space: 3342925560
effective search space used: 3342925560
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.