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Search of human proteins with 14110414
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c
[Homo sapiens]
(306 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c ... 620 e-178
gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a ... 595 e-170
gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d ... 569 e-163
gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b ... 544 e-155
gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform ... 337 1e-92
gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform ... 318 4e-87
gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo... 309 2e-84
gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo sap... 182 2e-46
gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b... 172 3e-43
gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a ... 172 3e-43
gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isofor... 171 6e-43
gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform... 171 7e-43
gi|20373175 musashi 2 isoform a [Homo sapiens] 167 8e-42
gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Hom... 167 8e-42
gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Hom... 167 8e-42
gi|25121993 musashi 2 isoform b [Homo sapiens] 165 5e-41
gi|4505255 musashi 1 [Homo sapiens] 161 8e-40
gi|89035135 PREDICTED: similar to heterogeneous nuclear ribonucl... 151 8e-37
gi|89034333 PREDICTED: similar to heterogeneous nuclear ribonucl... 151 8e-37
gi|169203146 PREDICTED: similar to heterogeneous nuclear ribonuc... 150 1e-36
gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens] 138 7e-33
gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens] 138 7e-33
gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo sapi... 136 2e-32
gi|6678271 TAR DNA binding protein [Homo sapiens] 114 8e-26
gi|226497734 RNA binding motif protein 19 [Homo sapiens] 83 3e-16
gi|226497654 RNA binding motif protein 19 [Homo sapiens] 83 3e-16
gi|226497574 RNA binding motif protein 19 [Homo sapiens] 83 3e-16
gi|55956788 nucleolin [Homo sapiens] 80 2e-15
gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens] 74 2e-13
gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens] 73 3e-13
>gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c
[Homo sapiens]
Length = 306
Score = 620 bits (1600), Expect = e-178
Identities = 306/306 (100%), Positives = 306/306 (100%)
Query: 1 MSEEQFGGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGS 60
MSEEQFGGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGS
Sbjct: 1 MSEEQFGGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGS 60
Query: 61 AESEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKF 120
AESEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKF
Sbjct: 61 AESEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKF 120
Query: 121 GEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP 180
GEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP
Sbjct: 121 GEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP 180
Query: 181 VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 240
VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM
Sbjct: 181 VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 240
Query: 241 EKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGDQQSGYGKVSRRGGHQ 300
EKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGDQQSGYGKVSRRGGHQ
Sbjct: 241 EKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGDQQSGYGKVSRRGGHQ 300
Query: 301 NSYKPY 306
NSYKPY
Sbjct: 301 NSYKPY 306
>gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a
[Homo sapiens]
Length = 355
Score = 595 bits (1535), Expect = e-170
Identities = 305/355 (85%), Positives = 306/355 (86%), Gaps = 49/355 (13%)
Query: 1 MSEEQFGGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGS 60
MSEEQFGGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGS
Sbjct: 1 MSEEQFGGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGS 60
Query: 61 AESEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKF 120
AESEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKF
Sbjct: 61 AESEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKF 120
Query: 121 GEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP 180
GEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP
Sbjct: 121 GEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP 180
Query: 181 VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 240
VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM
Sbjct: 181 VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 240
Query: 241 EKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGG---------------- 284
EKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGG
Sbjct: 241 EKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQ 300
Query: 285 ---------------------------------DQQSGYGKVSRRGGHQNSYKPY 306
+QQSGYGKVSRRGGHQNSYKPY
Sbjct: 301 GYGNYGYNSQGYGGYGGYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY 355
>gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d
[Homo sapiens]
Length = 287
Score = 569 bits (1467), Expect = e-163
Identities = 287/306 (93%), Positives = 287/306 (93%), Gaps = 19/306 (6%)
Query: 1 MSEEQFGGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGS 60
MSEEQFGGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGS
Sbjct: 1 MSEEQFGGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGS 60
Query: 61 AESEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKF 120
AESEGAKIDASKNEEDEG KMFIGGLSWDTTKKDLKDYFSKF
Sbjct: 61 AESEGAKIDASKNEEDEG-------------------KMFIGGLSWDTTKKDLKDYFSKF 101
Query: 121 GEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP 180
GEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP
Sbjct: 102 GEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP 161
Query: 181 VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 240
VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM
Sbjct: 162 VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 221
Query: 241 EKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGDQQSGYGKVSRRGGHQ 300
EKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGDQQSGYGKVSRRGGHQ
Sbjct: 222 EKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGDQQSGYGKVSRRGGHQ 281
Query: 301 NSYKPY 306
NSYKPY
Sbjct: 282 NSYKPY 287
>gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b
[Homo sapiens]
Length = 336
Score = 544 bits (1402), Expect = e-155
Identities = 286/355 (80%), Positives = 287/355 (80%), Gaps = 68/355 (19%)
Query: 1 MSEEQFGGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGS 60
MSEEQFGGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGS
Sbjct: 1 MSEEQFGGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGS 60
Query: 61 AESEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKF 120
AESEGAKIDASKNEEDEG KMFIGGLSWDTTKKDLKDYFSKF
Sbjct: 61 AESEGAKIDASKNEEDEG-------------------KMFIGGLSWDTTKKDLKDYFSKF 101
Query: 121 GEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP 180
GEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP
Sbjct: 102 GEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP 161
Query: 181 VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 240
VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM
Sbjct: 162 VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 221
Query: 241 EKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGG---------------- 284
EKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGG
Sbjct: 222 EKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQ 281
Query: 285 ---------------------------------DQQSGYGKVSRRGGHQNSYKPY 306
+QQSGYGKVSRRGGHQNSYKPY
Sbjct: 282 GYGNYGYNSQGYGGYGGYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY 336
>gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform b
[Homo sapiens]
Length = 285
Score = 337 bits (863), Expect = 1e-92
Identities = 179/296 (60%), Positives = 213/296 (71%), Gaps = 33/296 (11%)
Query: 22 SAGEQEGAMVAATQGAA-AAAGSGAGTGGGTASGGTEGGSAE-SEGAKIDASKNEEDEGH 79
+ G E A +G + A AG+GA G G A+ G+ +EG +I+ASKNEED G
Sbjct: 12 TTGATENGHEAVPEGESPAGAGTGAAAGAGGATAAPPSGNQNGAEGDQINASKNEEDAG- 70
Query: 80 SNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRG 139
KMF+GGLSWDT+KKDLKDYF+KFGEVVDCT+K+DP TGRSRG
Sbjct: 71 ------------------KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRG 112
Query: 140 FGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIR 199
FGF+LFK++ SV+KV+DQKEH+L+G+VIDPK+A AMK K+PVKKIFVGGL+P+ EEKIR
Sbjct: 113 FGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMK-KDPVKKIFVGGLNPEATEEKIR 171
Query: 200 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMS 259
EYFG FGE+E+IELPMD K NKRRGF FITFKEEEPVKK++EKK+H V SKCEIKVA
Sbjct: 172 EYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQP 231
Query: 260 KEQYQQQQQWGSRGGFAGRARGR---------GGDQQSGYGKVSRRGGHQNSYKPY 306
KE Y QQQQ+GS GG R RG GG + YGK RRGGHQN+YKPY
Sbjct: 232 KEVY-QQQQYGS-GGRGNRNRGNRGSGGGGGGGGQGSTNYGKSQRRGGHQNNYKPY 285
>gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform a
[Homo sapiens]
Length = 332
Score = 318 bits (815), Expect = 4e-87
Identities = 180/342 (52%), Positives = 213/342 (62%), Gaps = 78/342 (22%)
Query: 22 SAGEQEGAMVAATQGAA-AAAGSGAGTGGGTASGGTEGGSAE-SEGAKIDASKNEEDEGH 79
+ G E A +G + A AG+GA G G A+ G+ +EG +I+ASKNEED G
Sbjct: 12 TTGATENGHEAVPEGESPAGAGTGAAAGAGGATAAPPSGNQNGAEGDQINASKNEEDAG- 70
Query: 80 SNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRG 139
KMF+GGLSWDT+KKDLKDYF+KFGEVVDCT+K+DP TGRSRG
Sbjct: 71 ------------------KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRG 112
Query: 140 FGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIR 199
FGF+LFK++ SV+KV+DQKEH+L+G+VIDPK+A AMK K+PVKKIFVGGL+P+ EEKIR
Sbjct: 113 FGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMK-KDPVKKIFVGGLNPEATEEKIR 171
Query: 200 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMS 259
EYFG FGE+E+IELPMD K NKRRGF FITFKEEEPVKK++EKK+H V SKCEIKVA
Sbjct: 172 EYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQP 231
Query: 260 KEQYQQQQQWGSRG------GFAGRARGRGGDQQS------------------------- 288
KE Y QQQQ+GS G G G G GG QS
Sbjct: 232 KEVY-QQQQYGSGGRGNRNRGNRGSGGGGGGGGQSQSWNQGYGNYWNQGYGYQQGYGPGY 290
Query: 289 ------------------------GYGKVSRRGGHQNSYKPY 306
YGK RRGGHQN+YKPY
Sbjct: 291 GGYDYSPYGYYGYGPGYDYSQGSTNYGKSQRRGGHQNNYKPY 332
>gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo
sapiens]
Length = 420
Score = 309 bits (792), Expect = 2e-84
Identities = 165/307 (53%), Positives = 199/307 (64%), Gaps = 82/307 (26%)
Query: 63 SEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGE 122
+EG+KI+ASKN++D+G KMFIGGLSWDT+KKDL +Y S+FGE
Sbjct: 133 AEGSKINASKNQQDDG-------------------KMFIGGLSWDTSKKDLTEYLSRFGE 173
Query: 123 VVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK 182
VVDCT+K DP+TGRSRGFGFVLFK++ SVDKV++ KEHKL+GK+IDPKRAKA+K KEP K
Sbjct: 174 VVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPK 233
Query: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
K+FVGGLSPDT EE+I+EYFG FGE+E+IELPMD KTN+RRGFCFIT+ +EEPVKK++E
Sbjct: 234 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 293
Query: 243 KYHNVGLSKCEIKVAMSKEQYQQQQQW---------GSRGGFAGRARGR----------- 282
+YH +G KCEIKVA KE Y+QQQQ G RGG GR RG+
Sbjct: 294 RYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQGFNNY 353
Query: 283 ------------GGD------------------------------QQSGYGKVSRRGG-H 299
GGD QQS YGK SR GG H
Sbjct: 354 YDQGYGNYNSAYGGDQNYSGYGGYDYTGYNYGNYGYGQGYADYSGQQSTYGKASRGGGNH 413
Query: 300 QNSYKPY 306
QN+Y+PY
Sbjct: 414 QNNYQPY 420
Score = 61.6 bits (148), Expect = 8e-10
Identities = 31/92 (33%), Positives = 49/92 (53%)
Query: 156 DQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 215
D E+ + + + A K ++ K+F+GGLS DT ++ + EY FGEV +
Sbjct: 122 DMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKT 181
Query: 216 DNKTNKRRGFCFITFKEEEPVKKIMEKKYHNV 247
D T + RGF F+ FK+ V K++E K H +
Sbjct: 182 DPVTGRSRGFGFVLFKDAASVDKVLELKEHKL 213
>gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo
sapiens]
Length = 378
Score = 182 bits (463), Expect = 2e-46
Identities = 93/235 (39%), Positives = 137/235 (58%), Gaps = 12/235 (5%)
Query: 69 DASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTL 128
D+ + G P+ E K+FIGGLS++TT L+++F K+G + DC +
Sbjct: 13 DSGRRRRRRGEEGHDPKEPEQLR------KLFIGGLSFETTDDSLREHFEKWGTLTDCVV 66
Query: 129 KLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP------VK 182
DP T RSRGFGFV + E VD M + HK++G+V++PKRA + + VK
Sbjct: 67 MRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVK 126
Query: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
KIFVGG+ DT E +R+YF +G++E+IE+ D ++ K+RGF F+TF + + V KI+ +
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186
Query: 243 KYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGDQQSGYGKVSRRG 297
KYH + CE+K A+SK++ Q RGG +G GRGG+ G G R G
Sbjct: 187 KYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGNFGGGGGNFGRGG 241
Score = 28.9 bits (63), Expect = 6.0
Identities = 16/53 (30%), Positives = 22/53 (41%)
Query: 7 GGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGG 59
GG+ G +G+Q+ G+ SG+ GGG SGG GG
Sbjct: 320 GGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGSGG 372
>gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b
[Homo sapiens]
Length = 372
Score = 172 bits (436), Expect = 3e-43
Identities = 92/228 (40%), Positives = 137/228 (60%), Gaps = 12/228 (5%)
Query: 87 SEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFK 146
SE+ + K+FIGGLS++TT + L+ +F ++G + DC + DP T RSRGFGFV +
Sbjct: 4 SESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYA 63
Query: 147 ESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKIRE 200
E VD M+ + HK++G+V++PKRA + + + VKKIFVGG+ DT E +R+
Sbjct: 64 TVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRD 123
Query: 201 YFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 260
YF +G++E IE+ D + K+RGF F+TF + + V KI+ +KYH V CE++ A+SK
Sbjct: 124 YFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSK 183
Query: 261 EQY-----QQQQQWGSRGGFAGRARGRGGDQQSGY-GKVSRRGGHQNS 302
++ Q+ + GS GR G GG+ G G S RGG S
Sbjct: 184 QEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGS 231
Score = 59.3 bits (142), Expect = 4e-09
Identities = 31/95 (32%), Positives = 53/95 (55%)
Query: 171 RAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 230
++++ K E ++K+F+GGLS +T +E +R +F +G + + D T + RGF F+T+
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 231 KEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQ 265
E V M + H V E K A+S+E Q+
Sbjct: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQR 97
Score = 30.4 bits (67), Expect = 2.0
Identities = 24/78 (30%), Positives = 27/78 (34%), Gaps = 10/78 (12%)
Query: 6 FGGDGA-AAAATAAVGGSAGEQEGAMVAATQGAAAAA---------GSGAGTGGGTASGG 55
FG DG GGS G G QG+ G G G GGG+ S
Sbjct: 247 FGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGGGSGSNF 306
Query: 56 TEGGSAESEGAKIDASKN 73
GGS G + S N
Sbjct: 307 GGGGSYNDFGNYNNQSSN 324
>gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a
[Homo sapiens]
Length = 320
Score = 172 bits (436), Expect = 3e-43
Identities = 92/228 (40%), Positives = 137/228 (60%), Gaps = 12/228 (5%)
Query: 87 SEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFK 146
SE+ + K+FIGGLS++TT + L+ +F ++G + DC + DP T RSRGFGFV +
Sbjct: 4 SESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYA 63
Query: 147 ESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKIRE 200
E VD M+ + HK++G+V++PKRA + + + VKKIFVGG+ DT E +R+
Sbjct: 64 TVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRD 123
Query: 201 YFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 260
YF +G++E IE+ D + K+RGF F+TF + + V KI+ +KYH V CE++ A+SK
Sbjct: 124 YFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSK 183
Query: 261 EQY-----QQQQQWGSRGGFAGRARGRGGDQQSGY-GKVSRRGGHQNS 302
++ Q+ + GS GR G GG+ G G S RGG S
Sbjct: 184 QEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGS 231
Score = 59.3 bits (142), Expect = 4e-09
Identities = 31/95 (32%), Positives = 53/95 (55%)
Query: 171 RAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 230
++++ K E ++K+F+GGLS +T +E +R +F +G + + D T + RGF F+T+
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 231 KEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQ 265
E V M + H V E K A+S+E Q+
Sbjct: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQR 97
>gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isoform
B1 [Homo sapiens]
Length = 353
Score = 171 bits (434), Expect = 6e-43
Identities = 86/224 (38%), Positives = 138/224 (61%), Gaps = 8/224 (3%)
Query: 88 EAATAQREEW-KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFK 146
E ++E++ K+FIGGLS++TT++ L++Y+ ++G++ DC + DP + RSRGFGFV F
Sbjct: 11 ERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFS 70
Query: 147 ESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP------VKKIFVGGLSPDTPEEKIRE 200
VD M + H ++G+V++PKRA A + VKK+FVGG+ DT E +R+
Sbjct: 71 SMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRD 130
Query: 201 YFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 260
YF +G++++IE+ D ++ K+RGF F+TF + +PV KI+ +KYH + E++ A+S+
Sbjct: 131 YFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSR 190
Query: 261 EQYQQ-QQQWGSRGGFAGRARGRGGDQQSGYGKVSRRGGHQNSY 303
++ Q+ Q RGG G RGG G G S G + Y
Sbjct: 191 QEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGY 234
Score = 28.9 bits (63), Expect = 6.0
Identities = 20/65 (30%), Positives = 23/65 (35%), Gaps = 3/65 (4%)
Query: 20 GGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGSAESEGAKIDASKNEEDEGH 79
GG G G G G G G G GG GG ++ G S N D G+
Sbjct: 249 GGPGGGNFGGSPGYGGGRGGYGGGGPGYGN---QGGGYGGGYDNYGGGNYGSGNYNDFGN 305
Query: 80 SNSSP 84
N P
Sbjct: 306 YNQQP 310
>gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform A2
[Homo sapiens]
Length = 341
Score = 171 bits (433), Expect = 7e-43
Identities = 84/213 (39%), Positives = 132/213 (61%), Gaps = 7/213 (3%)
Query: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
K+FIGGLS++TT++ L++Y+ ++G++ DC + DP + RSRGFGFV F VD M
Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69
Query: 158 KEHKLNGKVIDPKRAKAMKTKEP------VKKIFVGGLSPDTPEEKIREYFGGFGEVESI 211
+ H ++G+V++PKRA A + VKK+FVGG+ DT E +R+YF +G++++I
Sbjct: 70 RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 129
Query: 212 ELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQ-QQQWG 270
E+ D ++ K+RGF F+TF + +PV KI+ +KYH + E++ A+S+++ Q+ Q
Sbjct: 130 EIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRS 189
Query: 271 SRGGFAGRARGRGGDQQSGYGKVSRRGGHQNSY 303
RGG G RGG G G S G + Y
Sbjct: 190 GRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGY 222
Score = 56.6 bits (135), Expect = 3e-08
Identities = 28/87 (32%), Positives = 49/87 (56%)
Query: 176 KTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEP 235
+ KE +K+F+GGLS +T EE +R Y+ +G++ + D + + RGF F+TF
Sbjct: 3 REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 62
Query: 236 VKKIMEKKYHNVGLSKCEIKVAMSKEQ 262
V M + H++ E K A+++E+
Sbjct: 63 VDAAMAARPHSIDGRVVEPKRAVAREE 89
Score = 28.9 bits (63), Expect = 6.0
Identities = 20/65 (30%), Positives = 23/65 (35%), Gaps = 3/65 (4%)
Query: 20 GGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGSAESEGAKIDASKNEEDEGH 79
GG G G G G G G G GG GG ++ G S N D G+
Sbjct: 237 GGPGGGNFGGSPGYGGGRGGYGGGGPGYGN---QGGGYGGGYDNYGGGNYGSGNYNDFGN 293
Query: 80 SNSSP 84
N P
Sbjct: 294 YNQQP 298
>gi|20373175 musashi 2 isoform a [Homo sapiens]
Length = 328
Score = 167 bits (424), Expect = 8e-42
Identities = 93/206 (45%), Positives = 118/206 (57%), Gaps = 11/206 (5%)
Query: 80 SNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRG 139
+ S A +Q + KMFIGGLSW T+ L+DYFSKFGE+ +C + DP T RSRG
Sbjct: 4 NGSQGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRG 63
Query: 140 FGFVLFKESESVDKVMDQKEHKLNGKVIDPK----RAKAMKTKEPVKKIFVGGLSPDTPE 195
FGFV F + SVDKV+ Q H+L+ K IDPK R K KKIFVGGLS +T
Sbjct: 64 FGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVV 123
Query: 196 EKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIK 255
E +++YF FG+VE L D TN+ RGF F+TF+ E+ V+K+ E +H + E K
Sbjct: 124 EDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECK 183
Query: 256 VAMSKEQYQQQQQWGSRGGFAGRARG 281
A KE G GRARG
Sbjct: 184 KAQPKEVMFPP-------GTRGRARG 202
>gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Homo
sapiens]
Length = 320
Score = 167 bits (424), Expect = 8e-42
Identities = 89/217 (41%), Positives = 131/217 (60%), Gaps = 12/217 (5%)
Query: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
K+FIGGLS++TT + L+ +F ++G + DC + DP T RSRGFGFV + E VD M+
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNT 74
Query: 158 KEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKIREYFGGFGEVESI 211
HK++G+V++PKRA + + + VKKIFVGG+ DT E +R+YF +G++E I
Sbjct: 75 TPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 134
Query: 212 ELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQY-----QQQ 266
E+ D + K+RGF F+TF + + V KI+ +KYH V CE++ A+ K++ Q+
Sbjct: 135 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQEMASASSSQR 194
Query: 267 QQWGSRGGFAGRARGRGGDQQSGY-GKVSRRGGHQNS 302
+ GS GR G GG+ G G S RGG S
Sbjct: 195 GRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGS 231
Score = 57.8 bits (138), Expect = 1e-08
Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 172 AKAMKTKEP--VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 229
+K+ KEP ++K+F+GGLS +T +E +R +F +G + + D T + RGF F+T
Sbjct: 2 SKSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Query: 230 FKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQ 265
+ E V M H V E K A+S+E Q+
Sbjct: 62 YATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQR 97
>gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Homo
sapiens]
Length = 320
Score = 167 bits (424), Expect = 8e-42
Identities = 89/217 (41%), Positives = 131/217 (60%), Gaps = 12/217 (5%)
Query: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
K+FIGGLS++TT + L+ +F ++G + DC + DP T RSRGFGFV + E VD M+
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNT 74
Query: 158 KEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKIREYFGGFGEVESI 211
HK++G+V++PKRA + + + VKKIFVGG+ DT E +R+YF +G++E I
Sbjct: 75 TPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 134
Query: 212 ELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQY-----QQQ 266
E+ D + K+RGF F+TF + + V KI+ +KYH V CE++ A+ K++ Q+
Sbjct: 135 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQEMASASSSQR 194
Query: 267 QQWGSRGGFAGRARGRGGDQQSGY-GKVSRRGGHQNS 302
+ GS GR G GG+ G G S RGG S
Sbjct: 195 GRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGS 231
Score = 57.8 bits (138), Expect = 1e-08
Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 172 AKAMKTKEP--VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 229
+K+ KEP ++K+F+GGLS +T +E +R +F +G + + D T + RGF F+T
Sbjct: 2 SKSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Query: 230 FKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQ 265
+ E V M H V E K A+S+E Q+
Sbjct: 62 YATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQR 97
>gi|25121993 musashi 2 isoform b [Homo sapiens]
Length = 251
Score = 165 bits (417), Expect = 5e-41
Identities = 90/188 (47%), Positives = 112/188 (59%), Gaps = 11/188 (5%)
Query: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
KMFIGGLSW T+ L+DYFSKFGE+ +C + DP T RSRGFGFV F + SVDKV+ Q
Sbjct: 18 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 77
Query: 158 KEHKLNGKVIDPK----RAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIEL 213
H+L+ K IDPK R K KKIFVGGLS +T E +++YF FG+VE L
Sbjct: 78 PHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAML 137
Query: 214 PMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRG 273
D TN+ RGF F+TF+ E+ V+K+ E +H + E K A KE
Sbjct: 138 MFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPP------- 190
Query: 274 GFAGRARG 281
G GRARG
Sbjct: 191 GTRGRARG 198
Score = 61.2 bits (147), Expect = 1e-09
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 180 PVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI 239
P K+F+GGLS T + +R+YF FGE+ + D T + RGF F+TF + V K+
Sbjct: 15 PSSKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKV 74
Query: 240 MEKKYHNVGLSKCEIKVAMSK 260
+ + +H + + KVA +
Sbjct: 75 LGQPHHELDSKTIDPKVAFPR 95
>gi|4505255 musashi 1 [Homo sapiens]
Length = 362
Score = 161 bits (407), Expect = 8e-40
Identities = 81/168 (48%), Positives = 107/168 (63%), Gaps = 4/168 (2%)
Query: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
KMFIGGLSW TT++ L++YF +FGEV +C + DP+T RSRGFGFV F + VDKV+ Q
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 158 KEHKLNGKVIDPK----RAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIEL 213
H+L+ K IDPK R K KKIFVGGLS +T E +++YF FG+V+ L
Sbjct: 81 SRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAML 140
Query: 214 PMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKE 261
D TN+ RGF F+TF+ E+ V+K+ E +H + E K A KE
Sbjct: 141 MFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKE 188
Score = 80.5 bits (197), Expect = 2e-15
Identities = 39/97 (40%), Positives = 61/97 (62%), Gaps = 1/97 (1%)
Query: 84 PRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFV 143
PR ++ R + K+F+GGLS +TT +D+K YF +FG+V D L D T R RGFGFV
Sbjct: 97 PRRAQPKMVTRTK-KIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFV 155
Query: 144 LFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP 180
F+ + V+KV + H++N K+++ K+A+ + P
Sbjct: 156 TFESEDIVEKVCEIHFHEINNKMVECKKAQPKEVMSP 192
>gi|89035135 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein A1-like [Homo sapiens]
Length = 321
Score = 151 bits (381), Expect = 8e-37
Identities = 82/229 (35%), Positives = 130/229 (56%), Gaps = 12/229 (5%)
Query: 87 SEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFK 146
SE+ ++ K+FIGGL ++T+ + L+ + ++G + +C + DP T RSRGFGFV +
Sbjct: 4 SESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYV 63
Query: 147 ESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKIRE 200
E VD M+ + HK+ G+V++PK A + + + VKKIFVGG+ DT E +R+
Sbjct: 64 TVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPLRD 123
Query: 201 YFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 260
Y+ +G+ E IE+ D + K+R F F+TF + KI+ +KYH V CE++ A+SK
Sbjct: 124 YYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKALSK 183
Query: 261 EQY-----QQQQQWGSRGGFAGRARGRGGDQQSGY-GKVSRRGGHQNSY 303
++ Q+ + GS GR G G+ G+ G S GG S+
Sbjct: 184 QKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGFGGSH 232
Score = 55.8 bits (133), Expect = 5e-08
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 172 AKAMKTKEP--VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 229
+K+ KEP ++K+F+GGL +T +E +R + +G + + D TN+ RGF F+
Sbjct: 2 SKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVP 61
Query: 230 FKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQ 265
+ E V M + H +G E K A+S+E Q+
Sbjct: 62 YVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQR 97
>gi|89034333 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein A1-like [Homo sapiens]
Length = 321
Score = 151 bits (381), Expect = 8e-37
Identities = 82/229 (35%), Positives = 130/229 (56%), Gaps = 12/229 (5%)
Query: 87 SEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFK 146
SE+ ++ K+FIGGL ++T+ + L+ + ++G + +C + DP T RSRGFGFV +
Sbjct: 4 SESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYV 63
Query: 147 ESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKIRE 200
E VD M+ + HK+ G+V++PK A + + + VKKIFVGG+ DT E +R+
Sbjct: 64 TVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPLRD 123
Query: 201 YFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 260
Y+ +G+ E IE+ D + K+R F F+TF + KI+ +KYH V CE++ A+SK
Sbjct: 124 YYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKALSK 183
Query: 261 EQY-----QQQQQWGSRGGFAGRARGRGGDQQSGY-GKVSRRGGHQNSY 303
++ Q+ + GS GR G G+ G+ G S GG S+
Sbjct: 184 QKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGFGGSH 232
Score = 55.8 bits (133), Expect = 5e-08
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 172 AKAMKTKEP--VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 229
+K+ KEP ++K+F+GGL +T +E +R + +G + + D TN+ RGF F+
Sbjct: 2 SKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVP 61
Query: 230 FKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQ 265
+ E V M + H +G E K A+S+E Q+
Sbjct: 62 YVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQR 97
>gi|169203146 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein A1-like [Homo sapiens]
Length = 321
Score = 150 bits (380), Expect = 1e-36
Identities = 78/216 (36%), Positives = 125/216 (57%), Gaps = 11/216 (5%)
Query: 87 SEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFK 146
SE+ ++ K+FIGGL ++T+ + L+ + ++G + +C + DP T RSRGFGFV +
Sbjct: 4 SESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYV 63
Query: 147 ESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKIRE 200
E VD M+ + HK+ G+V++PK A + + + VKKIFVGG+ DT E +R+
Sbjct: 64 TVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPLRD 123
Query: 201 YFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 260
Y+ +G+ E IE+ D + K+R F F+TF + KI+ +KYH V CE++ A+SK
Sbjct: 124 YYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKALSK 183
Query: 261 EQY-----QQQQQWGSRGGFAGRARGRGGDQQSGYG 291
++ Q+ + GS GR G G+ G+G
Sbjct: 184 QKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHG 219
Score = 55.8 bits (133), Expect = 5e-08
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 172 AKAMKTKEP--VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 229
+K+ KEP ++K+F+GGL +T +E +R + +G + + D TN+ RGF F+
Sbjct: 2 SKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVP 61
Query: 230 FKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQ 265
+ E V M + H +G E K A+S+E Q+
Sbjct: 62 YVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQR 97
>gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]
Length = 378
Score = 138 bits (347), Expect = 7e-33
Identities = 84/224 (37%), Positives = 119/224 (53%), Gaps = 33/224 (14%)
Query: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
K+F+GGL W TT++ L+ YFS++GEVVDC + D T +SRGFGFV FK+ V V+
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 158 KEHKLNGKVIDPK------------RAKAMKTKEP------VKKIFVGGLSPDTPEEKIR 199
+ H L+G+ IDPK R K K P KIFVGG+ + E ++R
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELR 130
Query: 200 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMS 259
EYF FG V + + D + + RGF FITF++E+ V + + +H++ K E+K A
Sbjct: 131 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEP 190
Query: 260 KEQYQQ------QQQWGSR------GGFAGRARGRGGDQQSGYG 291
++ Q QWGSR G+AG+ Q GYG
Sbjct: 191 RDSKSQAPGQPGASQWGSRVVPNAANGWAGQP---PPTWQQGYG 231
Score = 55.8 bits (133), Expect = 5e-08
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Query: 179 EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 238
+ + K+FVGGL T +E +R YF +GEV + D TN+ RGF F+ FK+ V
Sbjct: 7 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66
Query: 239 IMEKKYH-----NVGLSKCEIKVAMSKEQYQQQQQW 269
++ + H N+ C + M E+ + ++ W
Sbjct: 67 VLASRPHTLDGRNIDPKPCTPR-GMQPERTRPKEGW 101
>gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]
Length = 407
Score = 138 bits (347), Expect = 7e-33
Identities = 84/224 (37%), Positives = 119/224 (53%), Gaps = 33/224 (14%)
Query: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
K+F+GGL W TT++ L+ YFS++GEVVDC + D T +SRGFGFV FK+ V V+
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 158 KEHKLNGKVIDPK------------RAKAMKTKEP------VKKIFVGGLSPDTPEEKIR 199
+ H L+G+ IDPK R K K P KIFVGG+ + E ++R
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELR 130
Query: 200 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMS 259
EYF FG V + + D + + RGF FITF++E+ V + + +H++ K E+K A
Sbjct: 131 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEP 190
Query: 260 KEQYQQ------QQQWGSR------GGFAGRARGRGGDQQSGYG 291
++ Q QWGSR G+AG+ Q GYG
Sbjct: 191 RDSKSQAPGQPGASQWGSRVVPNAANGWAGQP---PPTWQQGYG 231
Score = 55.8 bits (133), Expect = 5e-08
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Query: 179 EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 238
+ + K+FVGGL T +E +R YF +GEV + D TN+ RGF F+ FK+ V
Sbjct: 7 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66
Query: 239 IMEKKYH-----NVGLSKCEIKVAMSKEQYQQQQQW 269
++ + H N+ C + M E+ + ++ W
Sbjct: 67 VLASRPHTLDGRNIDPKPCTPR-GMQPERTRPKEGW 101
>gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo
sapiens]
Length = 305
Score = 136 bits (343), Expect = 2e-32
Identities = 82/219 (37%), Positives = 115/219 (52%), Gaps = 13/219 (5%)
Query: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
K+FIGGL+ T++ L+ +F FG + DC + ++P T RSR FGFV + E D M
Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67
Query: 158 KEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKIREYFGGFGEVESI 211
H ++G ++ KRA + + VKK+FVGGL D E + E+F FG VE
Sbjct: 68 SPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKA 127
Query: 212 ELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQWG- 270
E+ D ++ K+RGF F+ F+ + K K+H + + E+K A+ KE G
Sbjct: 128 EIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIYSGGGGGG 187
Query: 271 ---SRGGFAGRARGRGGDQQSGYGKVSRRGGHQNSYKPY 306
SRGG GR RG GG Q+G K GG NSY Y
Sbjct: 188 SRSSRGGRGGRGRG-GGRDQNGLSKGG--GGGYNSYGGY 223
Score = 28.9 bits (63), Expect = 6.0
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Query: 7 GGDGAAAAATAAVGG----SAGEQEGAMVAATQGAAAAAGSGAGTGGG-TASGGTEGGSA 61
GG G + ++ GG +Q G G + G G G GGG A GG GGS+
Sbjct: 183 GGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYNAYGGGGGGSS 242
>gi|6678271 TAR DNA binding protein [Homo sapiens]
Length = 414
Score = 114 bits (286), Expect = 8e-26
Identities = 78/241 (32%), Positives = 130/241 (53%), Gaps = 19/241 (7%)
Query: 71 SKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKL 130
+K + DE ++S+ + A + + + GL W TT++DLK+YFS FGEV+ +K
Sbjct: 81 NKRKMDETDASSAVKVKRAVQKTSD---LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKK 137
Query: 131 DPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK-EPV--KKIFVG 187
D TG S+GFGFV F E E+ KVM Q+ H ++G+ D K + +++ EP+ +K+FVG
Sbjct: 138 DLKTGHSKGFGFVRFTEYETQVKVMSQR-HMIDGRWCDCKLPNSKQSQDEPLRSRKVFVG 196
Query: 188 GLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK----K 243
+ D E+++RE+F +G+V + +P R F F+TF +++ + + + K
Sbjct: 197 RCTEDMTEDELREFFSQYGDVMDVFIP-----KPFRAFAFVTFADDQIAQSLCGEDLIIK 251
Query: 244 YHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGF---AGRARGRGGDQQSGYGKVSRRGGHQ 300
+V +S E K +++ + + G+ GGF G RGG G + S GG
Sbjct: 252 GISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGLGNNQGSNMGGGM 311
Query: 301 N 301
N
Sbjct: 312 N 312
>gi|226497734 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 82.8 bits (203), Expect = 3e-16
Identities = 60/202 (29%), Positives = 94/202 (46%), Gaps = 24/202 (11%)
Query: 72 KNEEDEGHSNSSPRHSEAATAQREEWK------MFIGGLSWDTTKKDLKDYFSKFGEVVD 125
+N +EG NSS + E + EE + +FI L++DTT++ LK+ FSK G V
Sbjct: 699 ENPTEEGADNSSAKMEEEEEEEEEEEESLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKS 758
Query: 126 CTL---KLDPITGRSRGFGFVLFKESESVDKVMDQKE------HKLNGKV--------ID 168
C++ K S GFGFV +++ E K + Q + HKL ++ +
Sbjct: 759 CSISKKKNKAGVLLSMGFGFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISERATKPAVT 818
Query: 169 PKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMD-NKTNKRRGFCF 227
R K + K+ KI V + +IRE F FGE++++ LP T RGF F
Sbjct: 819 LARKKQVPRKQTTSKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGF 878
Query: 228 ITFKEEEPVKKIMEKKYHNVGL 249
+ F ++ K+ H+ L
Sbjct: 879 VDFLTKQDAKRAFNALCHSTHL 900
Score = 48.1 bits (113), Expect = 9e-06
Identities = 41/205 (20%), Positives = 76/205 (37%), Gaps = 31/205 (15%)
Query: 59 GSAESEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFS 118
G+ + +G + E + E T + + G ++ T+K++ ++ +
Sbjct: 260 GAGQEQGMPAGKKRPPEARAETEKPANQKEPTTCHTVKLR----GAPFNVTEKNVMEFLA 315
Query: 119 KFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK 178
V ++ G G+ FV F E V + + + G+ I+ R K + T
Sbjct: 316 PLKPVAIRIVR--NAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKNVPTT 373
Query: 179 EPVKK-------------------------IFVGGLSPDTPEEKIREYFGGFGEVESIEL 213
+ K +FV L + EE + + F +G + +
Sbjct: 374 KGAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHY 433
Query: 214 PMDNKTNKRRGFCFITFKEEEPVKK 238
P+D+ T K +GF FITF E K
Sbjct: 434 PIDSLTKKPKGFAFITFMFPEHAVK 458
Score = 42.0 bits (97), Expect = 7e-04
Identities = 18/63 (28%), Positives = 35/63 (55%)
Query: 95 EEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 154
E ++F+ L + +T++DL+ FSK+G + + +D +T + +GF F+ F E K
Sbjct: 400 ESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKA 459
Query: 155 MDQ 157
+
Sbjct: 460 YSE 462
Score = 35.0 bits (79), Expect = 0.083
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
++ + L ++ + F+ FG + DC+LK G+ R FGF+ FK E K
Sbjct: 3 RLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTK-DGKFRKFGFIGFKSEEEAQKA--- 58
Query: 158 KEHKLNGKVIDPKR 171
+ N ID R
Sbjct: 59 -QKHFNKSFIDTSR 71
Score = 34.7 bits (78), Expect = 0.11
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Query: 181 VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 240
+ ++ V L EE+ R+ F FG + L K K R F FI FK EE +K
Sbjct: 1 MSRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKF-TKDGKFRKFGFIGFKSEEEAQK-A 58
Query: 241 EKKYHNVGLSKCEIKVAMSK 260
+K ++ + I V K
Sbjct: 59 QKHFNKSFIDTSRITVEFCK 78
>gi|226497654 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 82.8 bits (203), Expect = 3e-16
Identities = 60/202 (29%), Positives = 94/202 (46%), Gaps = 24/202 (11%)
Query: 72 KNEEDEGHSNSSPRHSEAATAQREEWK------MFIGGLSWDTTKKDLKDYFSKFGEVVD 125
+N +EG NSS + E + EE + +FI L++DTT++ LK+ FSK G V
Sbjct: 699 ENPTEEGADNSSAKMEEEEEEEEEEEESLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKS 758
Query: 126 CTL---KLDPITGRSRGFGFVLFKESESVDKVMDQKE------HKLNGKV--------ID 168
C++ K S GFGFV +++ E K + Q + HKL ++ +
Sbjct: 759 CSISKKKNKAGVLLSMGFGFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISERATKPAVT 818
Query: 169 PKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMD-NKTNKRRGFCF 227
R K + K+ KI V + +IRE F FGE++++ LP T RGF F
Sbjct: 819 LARKKQVPRKQTTSKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGF 878
Query: 228 ITFKEEEPVKKIMEKKYHNVGL 249
+ F ++ K+ H+ L
Sbjct: 879 VDFLTKQDAKRAFNALCHSTHL 900
Score = 48.1 bits (113), Expect = 9e-06
Identities = 41/205 (20%), Positives = 76/205 (37%), Gaps = 31/205 (15%)
Query: 59 GSAESEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFS 118
G+ + +G + E + E T + + G ++ T+K++ ++ +
Sbjct: 260 GAGQEQGMPAGKKRPPEARAETEKPANQKEPTTCHTVKLR----GAPFNVTEKNVMEFLA 315
Query: 119 KFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK 178
V ++ G G+ FV F E V + + + G+ I+ R K + T
Sbjct: 316 PLKPVAIRIVR--NAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKNVPTT 373
Query: 179 EPVKK-------------------------IFVGGLSPDTPEEKIREYFGGFGEVESIEL 213
+ K +FV L + EE + + F +G + +
Sbjct: 374 KGAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHY 433
Query: 214 PMDNKTNKRRGFCFITFKEEEPVKK 238
P+D+ T K +GF FITF E K
Sbjct: 434 PIDSLTKKPKGFAFITFMFPEHAVK 458
Score = 42.0 bits (97), Expect = 7e-04
Identities = 18/63 (28%), Positives = 35/63 (55%)
Query: 95 EEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 154
E ++F+ L + +T++DL+ FSK+G + + +D +T + +GF F+ F E K
Sbjct: 400 ESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKA 459
Query: 155 MDQ 157
+
Sbjct: 460 YSE 462
Score = 35.0 bits (79), Expect = 0.083
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
++ + L ++ + F+ FG + DC+LK G+ R FGF+ FK E K
Sbjct: 3 RLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTK-DGKFRKFGFIGFKSEEEAQKA--- 58
Query: 158 KEHKLNGKVIDPKR 171
+ N ID R
Sbjct: 59 -QKHFNKSFIDTSR 71
Score = 34.7 bits (78), Expect = 0.11
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Query: 181 VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 240
+ ++ V L EE+ R+ F FG + L K K R F FI FK EE +K
Sbjct: 1 MSRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKF-TKDGKFRKFGFIGFKSEEEAQK-A 58
Query: 241 EKKYHNVGLSKCEIKVAMSK 260
+K ++ + I V K
Sbjct: 59 QKHFNKSFIDTSRITVEFCK 78
>gi|226497574 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 82.8 bits (203), Expect = 3e-16
Identities = 60/202 (29%), Positives = 94/202 (46%), Gaps = 24/202 (11%)
Query: 72 KNEEDEGHSNSSPRHSEAATAQREEWK------MFIGGLSWDTTKKDLKDYFSKFGEVVD 125
+N +EG NSS + E + EE + +FI L++DTT++ LK+ FSK G V
Sbjct: 699 ENPTEEGADNSSAKMEEEEEEEEEEEESLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKS 758
Query: 126 CTL---KLDPITGRSRGFGFVLFKESESVDKVMDQKE------HKLNGKV--------ID 168
C++ K S GFGFV +++ E K + Q + HKL ++ +
Sbjct: 759 CSISKKKNKAGVLLSMGFGFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISERATKPAVT 818
Query: 169 PKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMD-NKTNKRRGFCF 227
R K + K+ KI V + +IRE F FGE++++ LP T RGF F
Sbjct: 819 LARKKQVPRKQTTSKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGF 878
Query: 228 ITFKEEEPVKKIMEKKYHNVGL 249
+ F ++ K+ H+ L
Sbjct: 879 VDFLTKQDAKRAFNALCHSTHL 900
Score = 48.1 bits (113), Expect = 9e-06
Identities = 41/205 (20%), Positives = 76/205 (37%), Gaps = 31/205 (15%)
Query: 59 GSAESEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFS 118
G+ + +G + E + E T + + G ++ T+K++ ++ +
Sbjct: 260 GAGQEQGMPAGKKRPPEARAETEKPANQKEPTTCHTVKLR----GAPFNVTEKNVMEFLA 315
Query: 119 KFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK 178
V ++ G G+ FV F E V + + + G+ I+ R K + T
Sbjct: 316 PLKPVAIRIVR--NAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKNVPTT 373
Query: 179 EPVKK-------------------------IFVGGLSPDTPEEKIREYFGGFGEVESIEL 213
+ K +FV L + EE + + F +G + +
Sbjct: 374 KGAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHY 433
Query: 214 PMDNKTNKRRGFCFITFKEEEPVKK 238
P+D+ T K +GF FITF E K
Sbjct: 434 PIDSLTKKPKGFAFITFMFPEHAVK 458
Score = 42.0 bits (97), Expect = 7e-04
Identities = 18/63 (28%), Positives = 35/63 (55%)
Query: 95 EEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 154
E ++F+ L + +T++DL+ FSK+G + + +D +T + +GF F+ F E K
Sbjct: 400 ESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKA 459
Query: 155 MDQ 157
+
Sbjct: 460 YSE 462
Score = 35.0 bits (79), Expect = 0.083
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
++ + L ++ + F+ FG + DC+LK G+ R FGF+ FK E K
Sbjct: 3 RLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTK-DGKFRKFGFIGFKSEEEAQKA--- 58
Query: 158 KEHKLNGKVIDPKR 171
+ N ID R
Sbjct: 59 -QKHFNKSFIDTSR 71
Score = 34.7 bits (78), Expect = 0.11
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Query: 181 VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 240
+ ++ V L EE+ R+ F FG + L K K R F FI FK EE +K
Sbjct: 1 MSRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKF-TKDGKFRKFGFIGFKSEEEAQK-A 58
Query: 241 EKKYHNVGLSKCEIKVAMSK 260
+K ++ + I V K
Sbjct: 59 QKHFNKSFIDTSRITVEFCK 78
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 80.1 bits (196), Expect = 2e-15
Identities = 69/247 (27%), Positives = 107/247 (43%), Gaps = 22/247 (8%)
Query: 62 ESEGAKIDA---SKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFS 118
E +G +ID S E N R + +T E + + LS+ T++ L++ F
Sbjct: 448 EKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFE 507
Query: 119 KFGEVVDCTLKLDPIT--GRSRGFGFVLFKESESVDKVMDQ-KEHKLNGKVI----DPKR 171
K T P G+S+G+ F+ F E + ++ + ++ G+ I R
Sbjct: 508 K------ATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 561
Query: 172 AKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK 231
+P K +FV GLS DT EE ++E F G + D +T +GF F+ F
Sbjct: 562 GSPNARSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIV---TDRETGSSKGFGFVDFN 618
Query: 232 EEEPVKKIME-KKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGDQQSGY 290
EE K E + + +K + A K + + G RGGF GR GRGG + G+
Sbjct: 619 SEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGFGGRGGGRGGFGGRGGGRGG--RGGF 676
Query: 291 GKVSRRG 297
G R G
Sbjct: 677 GGRGRGG 683
>gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
Length = 631
Score = 73.9 bits (180), Expect = 2e-13
Identities = 58/200 (29%), Positives = 90/200 (45%), Gaps = 23/200 (11%)
Query: 85 RHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVL 144
R +E +E ++I D + LKD F KFG + + D +G+S+GFGFV
Sbjct: 179 REAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVS 237
Query: 145 FKESESVDKVMDQKEHK-LNGKVIDPKRAKA--------------MK----TKEPVKKIF 185
F+ E K +D+ K LNGK I RA+ MK T+ V ++
Sbjct: 238 FERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLY 297
Query: 186 VGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKE-EEPVKKIMEKKY 244
V L +E++R+ F FG + S ++ M+ + +GF F+ F EE K + E
Sbjct: 298 VKNLDDGIDDERLRKAFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 245 HNVGLSKCEIKVAMSKEQYQ 264
V + +A KE+ Q
Sbjct: 356 RIVATKPLYVALAQRKEERQ 375
Score = 52.4 bits (124), Expect = 5e-07
Identities = 42/181 (23%), Positives = 83/181 (45%), Gaps = 14/181 (7%)
Query: 99 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 158
+++G L D T+ L + FS G ++ + D IT S + +V F+ ++ + +D
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD-- 70
Query: 159 EHKLNGKVIDPKRAKAMKT-------KEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESI 211
+N VI K + M + K V IFV L + + + FG + S
Sbjct: 71 --TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSC 128
Query: 212 ELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQWGS 271
+ D N +G+ F+ F+ E ++ + KK + + L+ ++ V K + +++ + G+
Sbjct: 129 NVVCDE--NGSKGYGFVHFETHEAAERAI-KKMNGMLLNGRKVFVGQFKSRKEREAELGA 185
Query: 272 R 272
R
Sbjct: 186 R 186
Score = 33.1 bits (74), Expect = 0.32
Identities = 15/62 (24%), Positives = 29/62 (46%)
Query: 180 PVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI 239
P ++VG L PD E + E F G + SI + D T+ + ++ F+ + +
Sbjct: 9 PTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHA 68
Query: 240 ME 241
++
Sbjct: 69 LD 70
>gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
Length = 636
Score = 73.2 bits (178), Expect = 3e-13
Identities = 56/200 (28%), Positives = 91/200 (45%), Gaps = 23/200 (11%)
Query: 85 RHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVL 144
R +E +E ++I D + LKD F KFG + + D +G+S+GFGFV
Sbjct: 179 REAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVS 237
Query: 145 FKESESVDKVMDQKEHK-LNGKVIDPKRA-KAMKTKEPVKK-----------------IF 185
F+ E K +D+ K LNGK I RA K ++ + +K+ ++
Sbjct: 238 FERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLY 297
Query: 186 VGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKE-EEPVKKIMEKKY 244
V L +E++R+ F FG + S ++ M+ + +GF F+ F EE K + E
Sbjct: 298 VKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 245 HNVGLSKCEIKVAMSKEQYQ 264
V + +A KE+ Q
Sbjct: 356 RIVATKPLYVALAQRKEERQ 375
Score = 60.5 bits (145), Expect = 2e-09
Identities = 44/181 (24%), Positives = 88/181 (48%), Gaps = 14/181 (7%)
Query: 99 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 158
+++G L D T+ L + FS G ++ + D IT RS G+ +V F++ ++ +D
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD-- 70
Query: 159 EHKLNGKVIDPKRAKAMKT-------KEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESI 211
+N VI K + M + K V IF+ L + + + F FG + S
Sbjct: 71 --TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 212 ELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQWGS 271
++ D N +G+ F+ F+ +E ++ +E K + + L+ ++ V K + +++ + G+
Sbjct: 129 KVVCDE--NGSKGYGFVHFETQEAAERAIE-KMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 272 R 272
R
Sbjct: 186 R 186
Score = 37.7 bits (86), Expect = 0.013
Identities = 16/62 (25%), Positives = 32/62 (51%)
Query: 180 PVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI 239
P+ ++VG L PD E + E F G + SI + D T + G+ ++ F++ ++
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERA 68
Query: 240 ME 241
++
Sbjct: 69 LD 70
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.130 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,485,341
Number of Sequences: 37866
Number of extensions: 622862
Number of successful extensions: 12073
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 332
Number of HSP's that attempted gapping in prelim test: 5716
Number of HSP's gapped (non-prelim): 4106
length of query: 306
length of database: 18,247,518
effective HSP length: 102
effective length of query: 204
effective length of database: 14,385,186
effective search space: 2934577944
effective search space used: 2934577944
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.