Guide to the Human Genome
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Name: IGSF22 Sequence: fasta or formatted (1326aa) NCBI GI: 253970427
Description:

immunoglobulin superfamily, member 22

Referenced in:

Fibronectin Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         79           2
 C cysteine            1.3         17           1
 D aspartate           6.0         79           2
 E glutamate           7.7        102           3
 F phenylalanine       3.2         42           2
 G glycine             6.3         83           2
 H histidine           2.1         28           1
 I isoleucine          5.1         67           2
 K lysine              9.4        124           3
 L leucine             7.3         97           2
 M methionine          2.3         30           1
 N asparagine          3.3         44           1
 P proline             5.8         77           3
 Q glutamine           2.8         37           1
 R arginine            4.8         64           2
 S serine              7.3         97           3
 T threonine           6.8         90           2
 V valine              8.9        118           2
 W tryptophan          1.4         18           1
 Y tyrosine            2.5         33           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   immunoglobulin superfamily, member 22 
IGFN1                 0.210   immunoglobulin-like and fibronectin type III domain...
TTN                   0.151   titin isoform N2-A 
TTN                   0.151   titin isoform novex-2 
TTN                   0.151   titin isoform novex-1 
TTN                   0.151   titin isoform N2-B 
MYBPC2                0.108   myosin binding protein C, fast type 
MYBPC1                0.105   myosin binding protein C, slow type isoform 4 
MYBPC1                0.105   myosin binding protein C, slow type isoform 2 
MYBPC1                0.105   myosin binding protein C, slow type isoform 1 
MYBPC1                0.101   myosin binding protein C, slow type isoform 3 
MYBPC3                0.096   myosin binding protein C, cardiac 
TTN                   0.067   titin isoform novex-3 
MYOM1                 0.063   myomesin 1 isoform b 
MYBPH                 0.061   myosin binding protein H 
MYOM1                 0.055   myomesin 1 isoform a 
MYOM2                 0.054   myomesin 2 
OBSCN                 0.053   obscurin, cytoskeletal calmodulin and titin-interact...
OBSCN                 0.053   obscurin, cytoskeletal calmodulin and titin-interac...
MYOM3                 0.053   myomesin family, member 3 
OBSL1                 0.046   obscurin-like 1 
MYBPHL                0.039   myosin binding protein H-like 
MYLK                  0.037   myosin light chain kinase isoform 3A 
MYLK                  0.037   myosin light chain kinase isoform 1 
DSCAM                 0.036   Down syndrome cell adhesion molecule isoform CHD2-42...
PRTG                  0.036   protogenin 
DCC                   0.036   deleted in colorectal carcinoma 
NCAM2                 0.036   neural cell adhesion molecule 2 precursor 
NEO1                  0.033   neogenin homolog 1 
CNTN6                 0.032   contactin 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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