Guide to the Human Genome
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Name: IGFN1 Sequence: fasta or formatted (868aa) NCBI GI: 148839296
Description:

immunoglobulin-like and fibronectin type III domain containing 1

Referenced in:

Fibronectin Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         65           2
 C cysteine            2.2         19           2
 D aspartate           5.5         48           1
 E glutamate           5.9         51           2
 F phenylalanine       2.4         21           1
 G glycine             9.0         78           2
 H histidine           2.2         19           1
 I isoleucine          2.6         23           1
 K lysine              3.8         33           2
 L leucine             7.9         69           2
 M methionine          1.3         11           1
 N asparagine          1.6         14           1
 P proline             8.4         73           2
 Q glutamine           5.0         43           2
 R arginine            6.5         56           2
 S serine              7.6         66           2
 T threonine           7.7         67           2
 V valine              9.0         78           2
 W tryptophan          1.8         16           1
 Y tyrosine            2.1         18           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   immunoglobulin-like and fibronectin type III domain... 
IGSF22                0.316   immunoglobulin superfamily, member 22 
TTN                   0.175   titin isoform N2-A 
TTN                   0.175   titin isoform novex-2 
TTN                   0.175   titin isoform novex-1 
TTN                   0.175   titin isoform N2-B 
MYBPC2                0.137   myosin binding protein C, fast type 
MYBPC1                0.128   myosin binding protein C, slow type isoform 4 
MYBPC1                0.128   myosin binding protein C, slow type isoform 2 
MYBPC1                0.128   myosin binding protein C, slow type isoform 1 
MYBPC1                0.122   myosin binding protein C, slow type isoform 3 
MYBPC3                0.121   myosin binding protein C, cardiac 
MYBPH                 0.095   myosin binding protein H 
MYOM3                 0.077   myomesin family, member 3 
MYOM2                 0.074   myomesin 2 
MYOM1                 0.065   myomesin 1 isoform b 
MYBPHL                0.062   myosin binding protein H-like 
MYOM1                 0.061   myomesin 1 isoform a 
OBSCN                 0.054   obscurin, cytoskeletal calmodulin and titin-interact...
OBSCN                 0.054   obscurin, cytoskeletal calmodulin and titin-interac...
MYLK                  0.047   myosin light chain kinase isoform 3A 
MYLK                  0.047   myosin light chain kinase isoform 1 
MYLK                  0.047   myosin light chain kinase isoform 3B 
MYLK                  0.047   myosin light chain kinase isoform 2 
SDK2                  0.043   sidekick 2 
SDK1                  0.040   sidekick 1 
L1CAM                 0.039   L1 cell adhesion molecule isoform 3 precursor [Homo...
L1CAM                 0.039   L1 cell adhesion molecule isoform 2 precursor 
L1CAM                 0.039   L1 cell adhesion molecule isoform 1 precursor 
SPEG                  0.038   SPEG complex locus 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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