Guide to the Human Genome
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Search of human proteins with 7662292

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|7662292 SPTF-associated factor 65 gamma [Homo sapiens]
         (414 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|7662292 SPTF-associated factor 65 gamma [Homo sapiens]             842   0.0  
gi|40807475 PML-RARA regulated adaptor molecule 1 [Homo sapiens]       35   0.16 
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]              35   0.16 
gi|116174780 SEC24 related gene family, member A [Homo sapiens]        34   0.21 
gi|148747351 protein kinase C and casein kinase substrate in neu...    34   0.21 
gi|149773456 hypothetical protein LOC643314 [Homo sapiens]             34   0.28 
gi|149944526 additional sex combs like 3 [Homo sapiens]                33   0.47 
gi|104485446 TBP-associated factor 8 [Homo sapiens]                    32   1.1  
gi|4758416 golgi-specific brefeldin A resistant guanine nucleoti...    32   1.1  
gi|7108367 vav 1 guanine nucleotide exchange factor [Homo sapiens]     31   1.8  
gi|12758125 ribosomal RNA processing 8, methyltransferase, homol...    31   1.8  
gi|34452709 bromodomain containing 8 isoform 3 [Homo sapiens]          31   1.8  
gi|34452707 bromodomain containing 8 isoform 2 [Homo sapiens]          31   1.8  
gi|34452705 bromodomain containing 8 isoform 1 [Homo sapiens]          31   1.8  
gi|203098334 Myc-binding protein-associated protein [Homo sapiens]     31   1.8  
gi|46094072 zinc finger protein 770 [Homo sapiens]                     31   1.8  
gi|157785548 PAS domain containing 1 [Homo sapiens]                    31   2.4  
gi|150378549 tangerin [Homo sapiens]                                   30   3.1  
gi|34365793 WNK lysine deficient protein kinase 4 [Homo sapiens]       30   4.0  
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]         30   4.0  
gi|148276998 zinc finger protein 628 [Homo sapiens]                    30   4.0  
gi|50345997 E1A binding protein p300 [Homo sapiens]                    30   5.2  
gi|55741864 zinc finger, FYVE domain containing 28 [Homo sapiens]      30   5.2  
gi|239757352 PREDICTED: similar to LMARRLC1A [Homo sapiens]            30   5.2  
gi|239751859 PREDICTED: similar to LMARRLC1A [Homo sapiens]            30   5.2  
gi|166064029 angiomotin isoform 1 [Homo sapiens]                       30   5.2  
gi|223029510 echinoderm microtubule associated protein like 4 is...    30   5.2  
gi|19923497 echinoderm microtubule associated protein like 4 iso...    30   5.2  
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa...    30   5.2  
gi|8923106 zinc finger, CCHC domain containing 10 [Homo sapiens]       30   5.2  

>gi|7662292 SPTF-associated factor 65 gamma [Homo sapiens]
          Length = 414

 Score =  842 bits (2175), Expect = 0.0
 Identities = 414/414 (100%), Positives = 414/414 (100%)

Query: 1   MNLQRYWGEIPISSSQTNRSSFDLLPREFRLVEVHDPPLHQPSANKPKPPTMLDIPSEPC 60
           MNLQRYWGEIPISSSQTNRSSFDLLPREFRLVEVHDPPLHQPSANKPKPPTMLDIPSEPC
Sbjct: 1   MNLQRYWGEIPISSSQTNRSSFDLLPREFRLVEVHDPPLHQPSANKPKPPTMLDIPSEPC 60

Query: 61  SLTIHTIQLIQHNRRLRNLIATAQAQNQQQTEGVKTEESEPLPSCPGSPPLPDDLLPLDC 120
           SLTIHTIQLIQHNRRLRNLIATAQAQNQQQTEGVKTEESEPLPSCPGSPPLPDDLLPLDC
Sbjct: 61  SLTIHTIQLIQHNRRLRNLIATAQAQNQQQTEGVKTEESEPLPSCPGSPPLPDDLLPLDC 120

Query: 121 KNPNAPFQIRHSDPESDFYRGKGEPVTELSWHSCRQLLYQAVATILAHAGFDCANESVLE 180
           KNPNAPFQIRHSDPESDFYRGKGEPVTELSWHSCRQLLYQAVATILAHAGFDCANESVLE
Sbjct: 121 KNPNAPFQIRHSDPESDFYRGKGEPVTELSWHSCRQLLYQAVATILAHAGFDCANESVLE 180

Query: 181 TLTDVAHEYCLKFTKLLRFAVDREARLGQTPFPDVMEQVFHEVGIGSVLSLQKFWQHRIK 240
           TLTDVAHEYCLKFTKLLRFAVDREARLGQTPFPDVMEQVFHEVGIGSVLSLQKFWQHRIK
Sbjct: 181 TLTDVAHEYCLKFTKLLRFAVDREARLGQTPFPDVMEQVFHEVGIGSVLSLQKFWQHRIK 240

Query: 241 DYHSYMLQISKQLSEEYERIVNPEKATEDAKPVKIKEEPVSDITFPVSEELEADLASGDQ 300
           DYHSYMLQISKQLSEEYERIVNPEKATEDAKPVKIKEEPVSDITFPVSEELEADLASGDQ
Sbjct: 241 DYHSYMLQISKQLSEEYERIVNPEKATEDAKPVKIKEEPVSDITFPVSEELEADLASGDQ 300

Query: 301 SLPMGVLGAQSERFPSNLEVEASPQASSAEVNASPLWNLAHVKMEPQESEEGNVSGHGVL 360
           SLPMGVLGAQSERFPSNLEVEASPQASSAEVNASPLWNLAHVKMEPQESEEGNVSGHGVL
Sbjct: 301 SLPMGVLGAQSERFPSNLEVEASPQASSAEVNASPLWNLAHVKMEPQESEEGNVSGHGVL 360

Query: 361 GSDVFEEPMSGMSEAGIPQSPDDSDSSYGSHSTDSLMGSSPVFNQRCKKRMRKI 414
           GSDVFEEPMSGMSEAGIPQSPDDSDSSYGSHSTDSLMGSSPVFNQRCKKRMRKI
Sbjct: 361 GSDVFEEPMSGMSEAGIPQSPDDSDSSYGSHSTDSLMGSSPVFNQRCKKRMRKI 414


>gi|40807475 PML-RARA regulated adaptor molecule 1 [Homo sapiens]
          Length = 669

 Score = 34.7 bits (78), Expect = 0.16
 Identities = 31/110 (28%), Positives = 44/110 (40%), Gaps = 13/110 (11%)

Query: 25  LPREFRLVEVHDPPLHQPSAN------KPKPPTMLDIPSEPCSLTIHTIQLIQHNRRLRN 78
           LP++    EV D P   P         KP PP + D+P +P  L     +L   +++   
Sbjct: 79  LPKKPPPPEVTDLPKKPPPPEVTDLPKKPPPPEVTDLPKKPSKL-----ELSDLSKKFPQ 133

Query: 79  LIATAQAQNQQQTE--GVKTEESEPLPSCPGSPPLPDDLLPLDCKNPNAP 126
           L AT   +   Q E      + S P P  P   PL  D L    + P+ P
Sbjct: 134 LGATPFPRKPLQPEVGEAPLKASLPEPGAPARKPLQPDELSHPARPPSEP 183


>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
          Length = 2400

 Score = 34.7 bits (78), Expect = 0.16
 Identities = 37/150 (24%), Positives = 59/150 (39%), Gaps = 22/150 (14%)

Query: 254  SEEYERIVNPEKATEDAKPVKIKEEPVSDITFPVSEELEADLASGDQSLPMGVLGAQSER 313
            S+E E    PE    +A  V+++ +       P SE++EA  A G+         A+ E 
Sbjct: 1963 SQEAEEEAQPESEDVEALEVEVETQEAEGEAQPESEDVEAPEAEGEMQ------EAEEEA 2016

Query: 314  FPSNLEVEASPQASSAEVNASPLWNLAHVKMEPQESE-EGNVSGHGVLGSDVFEEPMSGM 372
             P +  VEA P++   E           V+ E Q++E +      GV   +  EE     
Sbjct: 2017 QPESDGVEAQPKSEGEEAQ--------EVEGETQKTEGDAQPESDGVEAPEAEEEAQEAE 2068

Query: 373  SEA------GIPQSPD-DSDSSYGSHSTDS 395
             E         P+S D D+  + G    +S
Sbjct: 2069 GEVQEAEGEAHPESEDVDAQEAEGEAQPES 2098


>gi|116174780 SEC24 related gene family, member A [Homo sapiens]
          Length = 1093

 Score = 34.3 bits (77), Expect = 0.21
 Identities = 37/138 (26%), Positives = 57/138 (41%), Gaps = 19/138 (13%)

Query: 37  PPLHQ---PSANKPKPPTMLDIPSEPCSLTIHTIQLIQHNRRLRNLIATAQAQNQQQTEG 93
           PP +Q   P      PP+ L+ PS P + T   +          N + T+ +    Q EG
Sbjct: 296 PPGYQNTTPPGATGVPPSSLNYPSGPQAFTQTPLGA--------NHLTTSMSGLSLQPEG 347

Query: 94  VKT----EESEPLPSCPGSPPLP---DDLLPLDCKNPNAPFQIRHSDPESDFYRGKGEPV 146
           ++     +E   LPS P  PP+P   +D+  L+C NP        S P++     K +  
Sbjct: 348 LRVVNLLQERNMLPSTPLKPPVPNLHEDIQKLNC-NPELFRCTLTSIPQTQALLNKAKLP 406

Query: 147 TELSWHSCRQLLYQAVAT 164
             L  H  + L+   V T
Sbjct: 407 LGLLLHPFKDLVQLPVVT 424


>gi|148747351 protein kinase C and casein kinase substrate in
           neurons 2 [Homo sapiens]
          Length = 486

 Score = 34.3 bits (77), Expect = 0.21
 Identities = 49/232 (21%), Positives = 89/232 (38%), Gaps = 61/232 (26%)

Query: 203 REARLGQTPFPDVMEQVFHEVGIGSVLSLQKFWQHRIKDYHSYMLQISKQLS-------- 254
           +E   G   + + MEQVF +         Q+F + R++ +   +L++ K L         
Sbjct: 213 KELDQGTPQYMENMEQVFEQC--------QQFEEKRLRFFREVLLEVQKHLDLSNVAGYK 264

Query: 255 ---EEYERIVNPEKATEDAKPVKIKEEPVSDITFPVSEELEADL---------------- 295
               + E+ +    A ED +  +    P   + +P  EE  ADL                
Sbjct: 265 AIYHDLEQSIRAADAVEDLRWFRANHGPGMAMNWPQFEEWSADLNRTLSRREKKKATDGV 324

Query: 296 ------ASGDQSLPMGVLGAQSERFPSNLEVEASP-QASSAEVNASPLW---NLAHVKME 345
                  +GDQSLP         +  S L V ++P Q++ ++ + +P     +      E
Sbjct: 325 TLTGINQTGDQSLP--------SKPSSTLNVPSNPAQSAQSQSSYNPFEDEDDTGSTVSE 376

Query: 346 PQESEEGNVSGHGVLGS-------DVFEEPMSGMSEAGIPQSPDDSDSSYGS 390
             +++  NVS +    S       D    P S  ++A    +P D D++ G+
Sbjct: 377 KDDTKAKNVSSYEKTQSYPTDWSDDESNNPFSS-TDANGDSNPFDDDATSGT 427


>gi|149773456 hypothetical protein LOC643314 [Homo sapiens]
          Length = 1427

 Score = 33.9 bits (76), Expect = 0.28
 Identities = 28/78 (35%), Positives = 37/78 (47%), Gaps = 5/78 (6%)

Query: 260  IVNPEKATEDAKPVKIKEEPVSDITFPVSEELEADLASGDQSLPMGVLGAQSERFPSNLE 319
            + NPE+ T  A  V   EEP S     ++ E   +L+S   S+P     A      SNLE
Sbjct: 1235 VSNPEEPTSPAAAVPTLEEPTSSAAAVLTPE---ELSSPAASVPTPEEPASPAAAVSNLE 1291

Query: 320  VEASPQAS--SAEVNASP 335
              ASP A+  + EV A P
Sbjct: 1292 EPASPAAAVPTPEVAAIP 1309


>gi|149944526 additional sex combs like 3 [Homo sapiens]
          Length = 2248

 Score = 33.1 bits (74), Expect = 0.47
 Identities = 36/169 (21%), Positives = 71/169 (42%), Gaps = 12/169 (7%)

Query: 235 WQHRIKDYH---SYMLQISKQLSEEYERIVNPEKATEDAKPVKI---KEEPVSDITFPVS 288
           W+ R+ +        L+I +++ +E +     EK  E     K+   +EE V   T P +
Sbjct: 319 WKQRLAEGEFTPEMQLRIRQEIEKEKKTEPWKEKFFERFYGEKLGMSREESVKLTTGPNN 378

Query: 289 EELEADLASGDQSLPMGVLGAQSERFPSNLEVEASPQASSAEVNASPLWNLAHVKMEPQE 348
              ++  + G   LP+    A +E+ P +++  ASP+          +       M   E
Sbjct: 379 AGAQSSSSCGTSGLPVSAQTALAEQQPKSMKSPASPEPGFCATLCPMVEIPPKDIMAELE 438

Query: 349 SEEGNVSGHGVLGSDVFEEPMSGMSEA------GIPQSPDDSDSSYGSH 391
           SE+  +    V+  ++ EE  + + E        IP+  ++++S   SH
Sbjct: 439 SEDILIPEESVIQEEIAEEVETSICECQDENHKTIPEFSEEAESLTNSH 487


>gi|104485446 TBP-associated factor 8 [Homo sapiens]
          Length = 310

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 16/56 (28%), Positives = 30/56 (53%)

Query: 155 RQLLYQAVATILAHAGFDCANESVLETLTDVAHEYCLKFTKLLRFAVDREARLGQT 210
           R+ L   V+++L  AGF+ A ++ +ETLT++   Y  +  +  +   +  AR   T
Sbjct: 34  RRTLQVVVSSLLTEAGFESAEKASVETLTEMLQSYISEIGRSAKSYCEHTARTQPT 89


>gi|4758416 golgi-specific brefeldin A resistant guanine nucleotide
           exchange factor 1 [Homo sapiens]
          Length = 1859

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 2/86 (2%)

Query: 322 ASPQASSAEVNASPLWNLAHVKMEPQESEEGNVSGHGVLGSDVFEEPMSGMSEAGIPQSP 381
           AS +A+SA V+ S    L        + +  ++   G  G     EP  G SE G+P+ P
Sbjct: 277 ASSEAASAVVSPSTDSGLEFSSQTTSKEDLTDLEQPGSPGYSTATEP--GSSELGVPEQP 334

Query: 382 DDSDSSYGSHSTDSLMGSSPVFNQRC 407
           D  + ++   S  + + S P   + C
Sbjct: 335 DLQEGTHVEKSQSASVESIPEVLEEC 360


>gi|7108367 vav 1 guanine nucleotide exchange factor [Homo sapiens]
          Length = 845

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 16/74 (21%), Positives = 35/74 (47%), Gaps = 1/74 (1%)

Query: 84  QAQNQQQTEGVKTEESEPLPSCPGSPPLPDDLLPLDCKNPNAPFQIRHSDPESDFYRGKG 143
           +AQ++++ E +   + E      G PP P  + P    NP    ++  ++ E +++ G+ 
Sbjct: 583 RAQDKKRNE-LGLPKMEVFQEYYGLPPPPGAIGPFLRLNPGDIVELTKAEAEQNWWEGRN 641

Query: 144 EPVTELSWHSCRQL 157
               E+ W  C ++
Sbjct: 642 TSTNEIGWFPCNRV 655


>gi|12758125 ribosomal RNA processing 8, methyltransferase, homolog
           [Homo sapiens]
          Length = 456

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 21/99 (21%)

Query: 11  PISSSQTNRSSFDLLPREFRLVEVHDPPLHQPSANKPKPPTMLDIPSEPCSLTIHTIQLI 70
           PI+S+Q   +     P+ ++    +DPP   P +  PKPP              HT+   
Sbjct: 141 PINSAQHLDNVDQTGPKAWKGSTTNDPPKQSPGSTSPKPP--------------HTLSRK 186

Query: 71  Q------HNRRLRNLIATAQAQNQQQTEGVKTEESEPLP 103
           Q      + RR +N     Q  +Q   E   TE++E  P
Sbjct: 187 QWRNRQKNKRRCKNKFQPPQVPDQAPAE-APTEKTEVSP 224


>gi|34452709 bromodomain containing 8 isoform 3 [Homo sapiens]
          Length = 757

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 11/113 (9%)

Query: 288 SEELEADL---ASGDQSLPMGVLGAQSERFPSNLEVEASPQASSAEVNAS-----PLWNL 339
           S++L+ +L   A+G+       +G   E   +N++ EASP++  +  + S     PL   
Sbjct: 435 SQDLDEELGSTAAGEIVEADVAIGKGDETPLTNVKTEASPESMLSPSHGSNPIEDPLEAE 494

Query: 340 AHVKMEPQES---EEGNVSGHGVLGSDVFEEPMSGMSEAGIPQSPDDSDSSYG 389
              K E  +S   E G + G  +  +   +E   G+SEA   + P + D   G
Sbjct: 495 TQHKFEMSDSLKEESGTIFGSQIKDAPGEDEEEDGVSEAASLEEPKEEDQGEG 547


>gi|34452707 bromodomain containing 8 isoform 2 [Homo sapiens]
          Length = 1235

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 11/113 (9%)

Query: 288 SEELEADL---ASGDQSLPMGVLGAQSERFPSNLEVEASPQASSAEVNAS-----PLWNL 339
           S++L+ +L   A+G+       +G   E   +N++ EASP++  +  + S     PL   
Sbjct: 541 SQDLDEELGSTAAGEIVEADVAIGKGDETPLTNVKTEASPESMLSPSHGSNPIEDPLEAE 600

Query: 340 AHVKMEPQES---EEGNVSGHGVLGSDVFEEPMSGMSEAGIPQSPDDSDSSYG 389
              K E  +S   E G + G  +  +   +E   G+SEA   + P + D   G
Sbjct: 601 TQHKFEMSDSLKEESGTIFGSQIKDAPGEDEEEDGVSEAASLEEPKEEDQGEG 653


>gi|34452705 bromodomain containing 8 isoform 1 [Homo sapiens]
          Length = 951

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 11/113 (9%)

Query: 288 SEELEADL---ASGDQSLPMGVLGAQSERFPSNLEVEASPQASSAEVNAS-----PLWNL 339
           S++L+ +L   A+G+       +G   E   +N++ EASP++  +  + S     PL   
Sbjct: 614 SQDLDEELGSTAAGEIVEADVAIGKGDETPLTNVKTEASPESMLSPSHGSNPIEDPLEAE 673

Query: 340 AHVKMEPQES---EEGNVSGHGVLGSDVFEEPMSGMSEAGIPQSPDDSDSSYG 389
              K E  +S   E G + G  +  +   +E   G+SEA   + P + D   G
Sbjct: 674 TQHKFEMSDSLKEESGTIFGSQIKDAPGEDEEEDGVSEAASLEEPKEEDQGEG 726


>gi|203098334 Myc-binding protein-associated protein [Homo sapiens]
          Length = 984

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 7/91 (7%)

Query: 255 EEYERIVNPEKATEDAKPVKIKEEPVSDITFPVSEELEADLASGDQSLPMGVLGAQSERF 314
           +E+   +  EKA+ +A+ +     P+S+   P  E  EA   SG Q   +G    Q +  
Sbjct: 670 KEHVSPIATEKASVNAELLPRFRSPISETQVPRPEN-EALRESGSQKARVGTKSPQRKSI 728

Query: 315 PSNLEVEASPQASSA----EVNASPL--WNL 339
              + VE SP   S     E +  PL  WNL
Sbjct: 729 MEEILVEESPDVDSTKSPWEPDGLPLLEWNL 759


>gi|46094072 zinc finger protein 770 [Homo sapiens]
          Length = 691

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 16/57 (28%), Positives = 23/57 (40%)

Query: 84  QAQNQQQTEGVKTEESEPLPSCPGSPPLPDDLLPLDCKNPNAPFQIRHSDPESDFYR 140
           +     Q  GVK E  + +P   G P LP+ LL  +  NP   +       +   YR
Sbjct: 570 EVSESDQMSGVKAESQDFIPGSTGQPCLPNVLLESEQSNPFCSYSEHQEKNDVFLYR 626


>gi|157785548 PAS domain containing 1 [Homo sapiens]
          Length = 773

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 3/83 (3%)

Query: 323 SPQASSAEVNASPLWNLAHVKMEPQESEEGNVSGHGVLGSDVFEEPMSGMSEAGI--PQS 380
           S Q    E   +PL+    V +E    +  +V   G +     E P++ + +AG+  P  
Sbjct: 283 SLQDFRGEPEVNPLYRADPVDLEFSVDQVDSVDQEGPMDQQDPENPVAPLDQAGLMDPVD 342

Query: 381 PDDS-DSSYGSHSTDSLMGSSPV 402
           P+DS D      S   L  SSPV
Sbjct: 343 PEDSVDLGAAGASAQPLQPSSPV 365


>gi|150378549 tangerin [Homo sapiens]
          Length = 1523

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 35/148 (23%), Positives = 55/148 (37%), Gaps = 13/148 (8%)

Query: 260  IVNPEKATEDAKPVKIKEEPVSDITFPVSEELEADLAS----GDQSLPMGVLGAQSERFP 315
            I+ PE   E+A+   ++E      +    E L A +      G Q     + G Q     
Sbjct: 871  IIVPEAEKEEAQTSGVQEAETRVGSALKYEALRAPVTQPRVLGSQEAKAEISGVQGSETQ 930

Query: 316  SNLEVEASPQASSAEVNASPLWNLAHVKMEPQESEEGNVSGH--------GVLGSDVFEE 367
                 EA           S  W     +M+  ES E N SG         GVLG++  +E
Sbjct: 931  VLRVQEAEAGVWGMSEGKSGAWGAQEAEMKVLESPE-NKSGTFKAQEAEAGVLGNEKGKE 989

Query: 368  PMSGMSEAGIPQSPDDSDSSYGSHSTDS 395
                ++EA +P++   S +  G+    S
Sbjct: 990  AEGSLTEASLPEAQVASGAGAGAPRASS 1017


>gi|34365793 WNK lysine deficient protein kinase 4 [Homo sapiens]
          Length = 1243

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 21/84 (25%)

Query: 74  RRLRNLIATAQAQNQQQTEGVKTEESEPLPSCPGSPPL-------PDDLLPLDCKNPNA- 125
           R +R  +A  Q + ++     K  E E LP  PG PP        P  + P + + P A 
Sbjct: 508 RAVRERVAAIQRKREKLR---KARELEALPPEPGPPPATVPMAPGPPSVFPPEPEEPEAD 564

Query: 126 ---PFQIRH-------SDPESDFY 139
              PF  RH       SD E+D Y
Sbjct: 565 QHQPFLFRHASYSSTTSDCETDGY 588


>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
          Length = 2968

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 34/127 (26%), Positives = 52/127 (40%), Gaps = 18/127 (14%)

Query: 275  IKEEPVSDITFPVSEELEA-DLASGDQSLPMGVLGAQSERFPSNLEVEASPQASSAEVNA 333
            + +EP   +TF  S   ++ D A  +Q       GA+     S+    +S  +SS+  + 
Sbjct: 2525 LAQEPGPGLTFEDSGNPKSPDKAQAEQD------GAEESESSSSSSSGSSSSSSSSSSSG 2578

Query: 334  SPLWNLAHVKMEPQESEEGNVSGHGVLGSDVFEEPMSGMSEAGIPQSPDDSDSSYGSHST 393
            S          E +  EEG+ +G G  G+       +  S A  P S   S SS  S S+
Sbjct: 2579 S----------ETEGEEEGDKNGDGGCGTG-GRNCSAASSRAASPASSSSSSSSSSSSSS 2627

Query: 394  DSLMGSS 400
             S   SS
Sbjct: 2628 SSSSSSS 2634


>gi|148276998 zinc finger protein 628 [Homo sapiens]
          Length = 1055

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 31/127 (24%), Positives = 45/127 (35%), Gaps = 14/127 (11%)

Query: 37  PPLHQPSANKPKPPTMLDIP-SEPCSLTIHTIQLIQHNRRLRNLIATAQAQNQ------- 88
           PP     A  P+PP  L    + P +  +H +  +Q    L     TAQA +        
Sbjct: 646 PPSTTAPAAGPQPPAPLAAARAPPATQDVHVLPHLQATLSLEVAGGTAQAPSLGPAAPNS 705

Query: 89  ------QQTEGVKTEESEPLPSCPGSPPLPDDLLPLDCKNPNAPFQIRHSDPESDFYRGK 142
                 Q  +G++   S   P  P  PP P  L+ L   +  A        P +    G+
Sbjct: 706 QTFLLVQTAQGLQLIPSSVQPPTPPPPPAPPKLILLPSSSAGAGGGRARQGPRAVGKAGQ 765

Query: 143 GEPVTEL 149
           G  V  L
Sbjct: 766 GAGVVWL 772


>gi|50345997 E1A binding protein p300 [Homo sapiens]
          Length = 2414

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 26/91 (28%), Positives = 31/91 (34%), Gaps = 13/91 (14%)

Query: 32  VEVHDPPLHQPSANKPKPPTMLDIPSEPCSLTIH----------TIQLIQHNRRLRNLIA 81
           +    PP     A  P PP M   P  P S  +H          T QL Q  +       
Sbjct: 849 IGAQQPPATTIPAPVPTPPAM---PPGPQSQALHPPPRQTPTPPTTQLPQQVQPSLPAAP 905

Query: 82  TAQAQNQQQTEGVKTEESEPLPSCPGSPPLP 112
           +A    QQ      T  S P P+ P  PP P
Sbjct: 906 SADQPQQQPRSQQSTAASVPTPTAPLLPPQP 936


>gi|55741864 zinc finger, FYVE domain containing 28 [Homo sapiens]
          Length = 887

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 5/87 (5%)

Query: 244 SYMLQISKQLSEEYERIVNPEKATEDAKPVKIKEEPVSDITFPVSEELEADLASGDQSLP 303
           SY   ++K      ER       +EDA   +  + P SD   P +   + D ASG Q   
Sbjct: 594 SYAAGLAKASDRAPERQEEAPPPSEDASNGREPKAPTSDKCLPHTSGSQVDTASGLQ--- 650

Query: 304 MGVLGAQSERFPSNLEVEA-SPQASSA 329
            G  G   ++ P   E+ A SP A  A
Sbjct: 651 -GEAGVAGQQEPEARELHAGSPPAHEA 676


>gi|239757352 PREDICTED: similar to LMARRLC1A [Homo sapiens]
          Length = 279

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 252 QLSEEYERIVNPEKATEDAKPVKIKEEPVSDITFPVSEELEADLASGDQSLP-MGVLG 308
           Q+++  + + +PE +  D KPV    E   D  + +S++++ ++AS     P  GV G
Sbjct: 211 QVTDGGDCVCHPESSHPDHKPVAQDPEDKGDCKYQISDDIQEEIASRYSRCPSRGVRG 268


>gi|239751859 PREDICTED: similar to LMARRLC1A [Homo sapiens]
          Length = 279

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 252 QLSEEYERIVNPEKATEDAKPVKIKEEPVSDITFPVSEELEADLASGDQSLP-MGVLG 308
           Q+++  + + +PE +  D KPV    E   D  + +S++++ ++AS     P  GV G
Sbjct: 211 QVTDGGDCVCHPESSHPDHKPVAQDPEDKGDCKYQISDDIQEEIASRYSRCPSRGVRG 268


>gi|166064029 angiomotin isoform 1 [Homo sapiens]
          Length = 1084

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 15/53 (28%)

Query: 91  TEGVKTEESEPLPSCPGSPPLPDDLLPLDCKNPNAPFQIRHSDPESDFYRGKG 143
           T GVK     P+ S P SPP P+DL     KNP +          S+FY+ +G
Sbjct: 185 TSGVKAHP--PVTSAPLSPPQPNDLY----KNPTS---------SSEFYKAQG 222


>gi|223029510 echinoderm microtubule associated protein like 4
           isoform b [Homo sapiens]
          Length = 923

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 2/62 (3%)

Query: 315 PSNLEVEASPQASSAEVNASPLWNLAHVKMEPQE--SEEGNVSGHGVLGSDVFEEPMSGM 372
           PS    E + + S    + + L N     +EP E  SEE +  G G LG  ++EEP + +
Sbjct: 844 PSQPLNETAEEESRISSSPTLLENSLEQTVEPSEDHSEEESEEGSGDLGEPLYEEPCNEI 903

Query: 373 SE 374
           S+
Sbjct: 904 SK 905


>gi|19923497 echinoderm microtubule associated protein like 4
           isoform a [Homo sapiens]
          Length = 981

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 2/62 (3%)

Query: 315 PSNLEVEASPQASSAEVNASPLWNLAHVKMEPQE--SEEGNVSGHGVLGSDVFEEPMSGM 372
           PS    E + + S    + + L N     +EP E  SEE +  G G LG  ++EEP + +
Sbjct: 902 PSQPLNETAEEESRISSSPTLLENSLEQTVEPSEDHSEEESEEGSGDLGEPLYEEPCNEI 961

Query: 373 SE 374
           S+
Sbjct: 962 SK 963


>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
           sapiens]
          Length = 2715

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 12/23 (52%), Positives = 15/23 (65%)

Query: 37  PPLHQPSANKPKPPTMLDIPSEP 59
           PPL  P A +P+PP   D P+EP
Sbjct: 669 PPLGAPEAPEPEPPPADDSPAEP 691


>gi|8923106 zinc finger, CCHC domain containing 10 [Homo sapiens]
          Length = 170

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 3/100 (3%)

Query: 316 SNLEVEASPQASSAEVNASPLWNLAHVKMEPQESEEGNVSGHGVLGSDVFEEPMSGMSEA 375
           +N+E +A  + S +  ++S   + +       ESEE + S      SD  E   S  S A
Sbjct: 72  TNVERKAKKKRSKSVTSSSSSSSDSSASDSSSESEETSTSSSSE-DSDTDESSSSSSSSA 130

Query: 376 G--IPQSPDDSDSSYGSHSTDSLMGSSPVFNQRCKKRMRK 413
                 S  DSDS   S S+ S    S   ++  KK+ +K
Sbjct: 131 SSTTSSSSSDSDSDSSSSSSSSTSTDSSSDDEPPKKKKKK 170


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.313    0.130    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,619,791
Number of Sequences: 37866
Number of extensions: 883595
Number of successful extensions: 3168
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 3119
Number of HSP's gapped (non-prelim): 90
length of query: 414
length of database: 18,247,518
effective HSP length: 105
effective length of query: 309
effective length of database: 14,271,588
effective search space: 4409920692
effective search space used: 4409920692
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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