Guide to the Human Genome
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Name: PACSIN2 Sequence: fasta or formatted (486aa) NCBI GI: 148747351
Description:

protein kinase C and casein kinase substrate in neurons 2

Referenced in:

Neurons

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         38           2
 C cysteine            1.2          6           1
 D aspartate           8.0         39           3
 E glutamate          10.7         52           2
 F phenylalanine       3.3         16           2
 G glycine             4.9         24           2
 H histidine           2.1         10           2
 I isoleucine          1.9          9           1
 K lysine              9.5         46           3
 L leucine             6.8         33           2
 M methionine          2.5         12           2
 N asparagine          4.5         22           2
 P proline             3.3         16           1
 Q glutamine           6.0         29           2
 R arginine            4.7         23           2
 S serine              7.8         38           2
 T threonine           4.5         22           1
 V valine              5.1         25           1
 W tryptophan          2.3         11           1
 Y tyrosine            3.1         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   protein kinase C and casein kinase substrate in neu... 
PACSIN1               0.626   protein kinase C and casein kinase substrate in neur...
PACSIN3               0.483   protein kinase C and casein kinase substrate in neur...
PSTPIP2               0.045   proline-serine-threonine phosphatase interacting pr...
PSTPIP1               0.045   proline-serine-threonine phosphatase interacting pro...
HCLS1                 0.039   hematopoietic cell-specific Lyn substrate 1 
FCHO2                 0.039   FCH domain only 2 isoform a 
FCHO2                 0.036   FCH domain only 2 isoform b 
MYO1F                 0.035   myosin IF 
FCHSD2                0.034   FCH and double SH3 domains 2 
SH3D19                0.034   SH3 domain containing 19 isoform c 
SH3D19                0.034   SH3 domain containing 19 isoform b 
SH3D19                0.034   SH3 domain containing 19 isoform a 
LASP1                 0.031   LIM and SH3 protein 1 
STAM                  0.031   signal transducing adaptor molecule 1 
ARHGAP26              0.031   GTPase regulator associated with the focal adhesion...
SH3YL1                0.030   SH3 domain containing, Ysc84-like 1 isoform 1 [Homo...
NEB                   0.030   nebulin 
SH3YL1                0.029   SH3 domain containing, Ysc84-like 1 isoform 2 [Homo...
SORBS2                0.029   sorbin and SH3 domain containing 2 isoform 8 
SORBS2                0.029   sorbin and SH3 domain containing 2 isoform 6 
SORBS2                0.029   sorbin and SH3 domain containing 2 isoform 5 
SORBS2                0.029   sorbin and SH3 domain containing 2 isoform 4 
SORBS2                0.029   sorbin and SH3 domain containing 2 isoform 3 
SORBS2                0.029   sorbin and SH3 domain containing 2 isoform 1 
DBNL                  0.029   drebrin-like isoform c 
DBNL                  0.029   drebrin-like isoform b 
DBNL                  0.029   drebrin-like isoform a 
SPATA13               0.028   spermatogenesis associated 13 
NEBL                  0.028   nebulette sarcomeric isoform 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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