Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: TSC22D3 Sequence: fasta or formatted (134aa) NCBI GI: 37622901
Description:

TSC22 domain family, member 3 isoform 2

Referenced in:

TGF-beta Family

Other entries for this name:
alt prot [200aa] TSC22 domain family, member 3 isoform 1
alt prot [77aa] TSC22 domain family, member 3 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         10           1
 C cysteine            0.7          1           1
 D aspartate           3.0          4           1
 E glutamate          12.7         17           2
 F phenylalanine       3.0          4           2
 G glycine             3.7          5           2
 H histidine           1.5          2           1
 I isoleucine          3.7          5           1
 K lysine              5.2          7           1
 L leucine            10.4         14           2
 M methionine          3.7          5           1
 N asparagine          5.2          7           1
 P proline             6.0          8           1
 Q glutamine           6.0          8           1
 R arginine            2.2          3           1
 S serine             10.4         14           2
 T threonine           3.0          4           1
 V valine              9.7         13           2
 W tryptophan          0.0          0           0
 Y tyrosine            2.2          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   TSC22 domain family, member 3 isoform 2 
TSC22D3               0.669   TSC22 domain family, member 3 isoform 1 
TSC22D1               0.581   TSC22 domain family, member 1 isoform 2 
TSC22D3               0.542   TSC22 domain family, member 3 isoform 3 
TSC22D1               0.432   TSC22 domain family, member 1 isoform 1 
TSC22D4               0.352   TSC22 domain family, member 4 
TSC22D2               0.352   TSC22 domain family, member 2 
NIN                   0.055   ninein isoform 4 
NIN                   0.055   ninein isoform 5 
NIN                   0.055   ninein isoform 1 
NIN                   0.055   ninein isoform 2 
EFCAB6                0.038   CAP-binding protein complex interacting protein 1 is...
EFCAB6                0.038   CAP-binding protein complex interacting protein 1 is...
MYCBP                 0.034   c-myc binding protein 
ANKRD30A              0.034   ankyrin repeat domain 30A 
DDX24                 0.034   DEAD (Asp-Glu-Ala-Asp) box polypeptide 24 
KIF4A                 0.025   kinesin family member 4 
PAWR                  0.025   PRKC, apoptosis, WT1, regulator 
HAP1                  0.025   huntingtin-associated protein 1 isoform 4 
HAP1                  0.025   huntingtin-associated protein 1 isoform 3 
HAP1                  0.025   huntingtin-associated protein 1 isoform 2 
AKAP13                0.025   A-kinase anchor protein 13 isoform 1 
AKAP13                0.025   A-kinase anchor protein 13 isoform 3 
AKAP13                0.025   A-kinase anchor protein 13 isoform 2 
BAZ2B                 0.025   bromodomain adjacent to zinc finger domain, 2B [Homo...
EPS15                 0.021   epidermal growth factor receptor pathway substrate 15...
CCDC88A               0.021   coiled-coil domain containing 88A isoform 2 
CCDC88A               0.021   coiled-coil domain containing 88A isoform 1 
ZW10                  0.021   centromere/kinetochore protein zw10 
MYT1L                 0.021   myelin transcription factor 1-like 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press