Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: TSC22D3 Sequence: fasta or formatted (77aa) NCBI GI: 62865625
Description:

TSC22 domain family, member 3 isoform 3

Referenced in:

TGF-beta Family

Other entries for this name:
alt prot [134aa] TSC22 domain family, member 3 isoform 2
alt prot [200aa] TSC22 domain family, member 3 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5          5           1
 C cysteine            1.3          1           1
 D aspartate           1.3          1           1
 E glutamate          18.2         14           2
 F phenylalanine       1.3          1           1
 G glycine             2.6          2           2
 H histidine           1.3          1           1
 I isoleucine          2.6          2           1
 K lysine              6.5          5           1
 L leucine            13.0         10           2
 M methionine          2.6          2           1
 N asparagine          3.9          3           1
 P proline             9.1          7           1
 Q glutamine           6.5          5           1
 R arginine            3.9          3           1
 S serine              7.8          6           1
 T threonine           2.6          2           1
 V valine              7.8          6           1
 W tryptophan          0.0          0           0
 Y tyrosine            1.3          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   TSC22 domain family, member 3 isoform 3 
TSC22D3               1.000   TSC22 domain family, member 3 isoform 1 
TSC22D3               1.000   TSC22 domain family, member 3 isoform 2 
TSC22D1               0.562   TSC22 domain family, member 1 isoform 1 
TSC22D1               0.562   TSC22 domain family, member 1 isoform 2 
TSC22D4               0.477   TSC22 domain family, member 4 
TSC22D2               0.438   TSC22 domain family, member 2 
NIN                   0.078   ninein isoform 4 
NIN                   0.078   ninein isoform 5 
NIN                   0.078   ninein isoform 1 
NIN                   0.078   ninein isoform 2 
EFCAB6                0.070   CAP-binding protein complex interacting protein 1 is...
EFCAB6                0.070   CAP-binding protein complex interacting protein 1 is...
DDX24                 0.062   DEAD (Asp-Glu-Ala-Asp) box polypeptide 24 
PAWR                  0.047   PRKC, apoptosis, WT1, regulator 
MYCBP                 0.047   c-myc binding protein 
HAP1                  0.047   huntingtin-associated protein 1 isoform 4 
HAP1                  0.047   huntingtin-associated protein 1 isoform 3 
HAP1                  0.047   huntingtin-associated protein 1 isoform 2 
AKAP13                0.047   A-kinase anchor protein 13 isoform 1 
AKAP13                0.047   A-kinase anchor protein 13 isoform 3 
AKAP13                0.047   A-kinase anchor protein 13 isoform 2 
CCDC88A               0.039   coiled-coil domain containing 88A isoform 2 
CCDC88A               0.039   coiled-coil domain containing 88A isoform 1 
MYT1L                 0.039   myelin transcription factor 1-like 
BAZ2B                 0.039   bromodomain adjacent to zinc finger domain, 2B [Homo...
TEX14                 0.039   testis expressed sequence 14 isoform a 
TEX14                 0.039   testis expressed sequence 14 isoform b 
C1orf113              0.039   SH3 domain-containing protein C1orf113 isoform 1 [H...
C1orf113              0.039   SH3 domain-containing protein C1orf113 isoform 2 [H...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press