Guide to the Human Genome
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Name: TSC22D1 Sequence: fasta or formatted (144aa) NCBI GI: 5174729
Description:

TSC22 domain family, member 1 isoform 2

Referenced in:

TGF-beta Family

Other entries for this name:
alt prot [1073aa] TSC22 domain family, member 1 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0         13           1
 C cysteine            0.7          1           1
 D aspartate           2.8          4           1
 E glutamate           7.6         11           2
 F phenylalanine       2.1          3           1
 G glycine             4.9          7           1
 H histidine           1.4          2           1
 I isoleucine          3.5          5           1
 K lysine              4.9          7           1
 L leucine            11.1         16           2
 M methionine          2.8          4           1
 N asparagine          4.2          6           2
 P proline             6.2          9           2
 Q glutamine          11.1         16           1
 R arginine            2.8          4           1
 S serine             11.1         16           3
 T threonine           5.6          8           2
 V valine              6.2          9           2
 W tryptophan          0.7          1           1
 Y tyrosine            1.4          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   TSC22 domain family, member 1 isoform 2 
TSC22D1               0.691   TSC22 domain family, member 1 isoform 1 
TSC22D3               0.535   TSC22 domain family, member 3 isoform 2 
TSC22D3               0.391   TSC22 domain family, member 3 isoform 1 
TSC22D2               0.371   TSC22 domain family, member 2 
TSC22D4               0.324   TSC22 domain family, member 4 
TSC22D3               0.281   TSC22 domain family, member 3 isoform 3 
SMEK1                 0.039   SMEK homolog 1, suppressor of mek1 
MYT1L                 0.035   myelin transcription factor 1-like 
NIN                   0.035   ninein isoform 4 
NIN                   0.035   ninein isoform 5 
NIN                   0.035   ninein isoform 1 
NIN                   0.035   ninein isoform 2 
BPTF                  0.031   bromodomain PHD finger transcription factor isoform ...
BPTF                  0.031   bromodomain PHD finger transcription factor isoform ...
ODF2L                 0.031   outer dense fiber of sperm tails 2-like isoform b [H...
ODF2L                 0.031   outer dense fiber of sperm tails 2-like isoform a [H...
MYCBP                 0.031   c-myc binding protein 
PCLO                  0.031   piccolo isoform 2 
PCLO                  0.031   piccolo isoform 1 
KRT80                 0.027   keratin 80 isoform a 
KRT80                 0.027   keratin 80 isoform b 
NGLY1                 0.027   N-glycanase 1 isoform 2 
NGLY1                 0.027   N-glycanase 1 isoform 1 
TTC31                 0.027   tetratricopeptide repeat domain 31 
NGLY1                 0.027   N-glycanase 1 isoform 4 
NGLY1                 0.027   N-glycanase 1 isoform 3 
PRKG1                 0.023   protein kinase, cGMP-dependent, type I isoform 2 [Ho...
AP3M1                 0.023   adaptor-related protein complex 3, mu 1 subunit [Homo...
AP3M1                 0.023   adaptor-related protein complex 3, mu 1 subunit [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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