Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 7661806
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7661806 mitochondrial ribosomal protein L15 [Homo sapiens]
(296 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7661806 mitochondrial ribosomal protein L15 [Homo sapiens] 606 e-174
gi|6912356 echinoderm microtubule associated protein like 2 [Hom... 36 0.035
gi|61102725 la related protein isoform 2 [Homo sapiens] 35 0.079
gi|39725634 la related protein isoform 1 [Homo sapiens] 35 0.079
gi|15055539 ribosomal protein S2 [Homo sapiens] 34 0.18
gi|239755943 PREDICTED: hypothetical protein [Homo sapiens] 33 0.39
gi|169160654 PREDICTED: similar to small nuclear ribonucleoprote... 33 0.39
gi|239048905 checkpoint with forkhead and ring finger domains is... 32 0.51
gi|239048862 checkpoint with forkhead and ring finger domains is... 32 0.51
gi|239048792 checkpoint with forkhead and ring finger domains is... 32 0.51
gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens] 32 0.51
gi|239753623 PREDICTED: hypothetical protein [Homo sapiens] 32 0.67
gi|239748202 PREDICTED: hypothetical protein XP_002346594 [Homo ... 32 0.67
gi|239742100 PREDICTED: hypothetical protein XP_002342435 [Homo ... 32 0.67
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 30 1.9
gi|134244285 Notch homolog 3 [Homo sapiens] 30 2.5
gi|32528297 ribosomal protein S6 kinase, polypeptide 5 isoform b... 30 2.5
gi|32528295 ribosomal protein S6 kinase, polypeptide 5 isoform a... 30 2.5
gi|239756916 PREDICTED: hypothetical protein [Homo sapiens] 30 2.5
gi|169161029 PREDICTED: hypothetical protein [Homo sapiens] 30 2.5
gi|239751407 PREDICTED: hypothetical protein XP_002347839 [Homo ... 30 2.5
gi|239747205 PREDICTED: hypothetical protein XP_002346408 [Homo ... 30 2.5
gi|239745917 PREDICTED: hypothetical protein XP_002343616 [Homo ... 30 2.5
gi|5902102 small nuclear ribonucleoprotein D1 polypeptide 16kDa ... 30 2.5
gi|88853069 vitronectin precursor [Homo sapiens] 30 2.5
gi|10835240 high mobility group nucleosomal binding domain 4 [Ho... 30 3.3
gi|110681708 zinc finger protein 579 [Homo sapiens] 30 3.3
gi|239746556 PREDICTED: hypothetical protein XP_002343778 [Homo ... 29 4.3
gi|18643383 inositol 1,4,5-trisphosphate 3-kinase C [Homo sapiens] 29 4.3
gi|239758008 PREDICTED: hypothetical protein XP_002346266 [Homo ... 29 5.7
>gi|7661806 mitochondrial ribosomal protein L15 [Homo sapiens]
Length = 296
Score = 606 bits (1562), Expect = e-174
Identities = 296/296 (100%), Positives = 296/296 (100%)
Query: 1 MAGPLQGGGARALDLLRGLPRVSLANLKPNPGSKKPERRPRGRRRGRKCGRGHKGERQRG 60
MAGPLQGGGARALDLLRGLPRVSLANLKPNPGSKKPERRPRGRRRGRKCGRGHKGERQRG
Sbjct: 1 MAGPLQGGGARALDLLRGLPRVSLANLKPNPGSKKPERRPRGRRRGRKCGRGHKGERQRG 60
Query: 61 TRPRLGFEGGQTPFYIRIPKYGFNEGHSFRRQYKPLSLNRLQYLIDLGRVDPSQPIDLTQ 120
TRPRLGFEGGQTPFYIRIPKYGFNEGHSFRRQYKPLSLNRLQYLIDLGRVDPSQPIDLTQ
Sbjct: 61 TRPRLGFEGGQTPFYIRIPKYGFNEGHSFRRQYKPLSLNRLQYLIDLGRVDPSQPIDLTQ 120
Query: 121 LVNGRGVTIQPLKRDYGVQLVEEGADTFTAKVNIEVQLASELAIAAIEKNGGVVTTAFYD 180
LVNGRGVTIQPLKRDYGVQLVEEGADTFTAKVNIEVQLASELAIAAIEKNGGVVTTAFYD
Sbjct: 121 LVNGRGVTIQPLKRDYGVQLVEEGADTFTAKVNIEVQLASELAIAAIEKNGGVVTTAFYD 180
Query: 181 PRSLDIVCKPVPFFLRGQPIPKRMLPPEELVPYYTDAKNRGYLADPAKFPEARLELARKY 240
PRSLDIVCKPVPFFLRGQPIPKRMLPPEELVPYYTDAKNRGYLADPAKFPEARLELARKY
Sbjct: 181 PRSLDIVCKPVPFFLRGQPIPKRMLPPEELVPYYTDAKNRGYLADPAKFPEARLELARKY 240
Query: 241 GYILPDITKDELFKMLCTRKDPRQIFFGLAPGWVVNMADKKILKPTDENLLKYYTS 296
GYILPDITKDELFKMLCTRKDPRQIFFGLAPGWVVNMADKKILKPTDENLLKYYTS
Sbjct: 241 GYILPDITKDELFKMLCTRKDPRQIFFGLAPGWVVNMADKKILKPTDENLLKYYTS 296
>gi|6912356 echinoderm microtubule associated protein like 2 [Homo
sapiens]
Length = 649
Score = 36.2 bits (82), Expect = 0.035
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 9/52 (17%)
Query: 191 VPFFLRGQPIPKRMLPPEELVPYYTDAKNRGYLADPAKFPEARLELARKYGY 242
V FLRG+P+P M+ P+EL P Y+ L ++ P RL+L YGY
Sbjct: 21 VKMFLRGRPVP--MMIPDELAPTYS-------LDTRSELPSCRLKLEWVYGY 63
>gi|61102725 la related protein isoform 2 [Homo sapiens]
Length = 1096
Score = 35.0 bits (79), Expect = 0.079
Identities = 24/58 (41%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 32 GSKKPERRPRGRRRGRKCGRGHKGER-----QRGTRPRLGFEGGQTPFYIRIPKYGFN 84
G + R RGR RGR GRG G R Q G R G EG +TP Y+ Y F+
Sbjct: 331 GGARASFRGRGRGRGRGRGRGRGGTRTHFDYQFGYRKFDGVEGPRTPKYMNNITYYFD 388
>gi|39725634 la related protein isoform 1 [Homo sapiens]
Length = 1019
Score = 35.0 bits (79), Expect = 0.079
Identities = 24/58 (41%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 32 GSKKPERRPRGRRRGRKCGRGHKGER-----QRGTRPRLGFEGGQTPFYIRIPKYGFN 84
G + R RGR RGR GRG G R Q G R G EG +TP Y+ Y F+
Sbjct: 254 GGARASFRGRGRGRGRGRGRGRGGTRTHFDYQFGYRKFDGVEGPRTPKYMNNITYYFD 311
>gi|15055539 ribosomal protein S2 [Homo sapiens]
Length = 293
Score = 33.9 bits (76), Expect = 0.18
Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 17/97 (17%)
Query: 171 GGVVTTAFYDPRSLDIVCKPVPFFLRGQPIPKRMLPPEELVPYYTDAKNRGYLADPAKFP 230
G V+ PR IV PVP K++L + YT A RG A F
Sbjct: 189 GSVLVRLIPAPRGTGIVSAPVP---------KKLLMMAGIDDCYTSA--RGCTATLGNFA 237
Query: 231 EARLE-LARKYGYILPDITKDELFKMLCTRKDPRQIF 266
+A + +++ Y Y+ PD+ K+ +F K P Q F
Sbjct: 238 KATFDAISKTYSYLTPDLWKETVF-----TKSPYQEF 269
>gi|239755943 PREDICTED: hypothetical protein [Homo sapiens]
Length = 107
Score = 32.7 bits (73), Expect = 0.39
Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 7 GGGARALDLLRGLPRVSLANLKPNPG-SKKPERRPRGRRRGRKCGRGHKGERQRGTRPR 64
GGG R RG P+ L P PG ++ PE GR GR G KG+ + PR
Sbjct: 12 GGGKR-----RGRPQAGARWLSPQPGPARPPEEGGSGRLSGRGSVEGEKGQGKDLLSPR 65
>gi|169160654 PREDICTED: similar to small nuclear ribonucleoprotein
D1 polypeptide 16kDa [Homo sapiens]
Length = 119
Score = 32.7 bits (73), Expect = 0.39
Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 5 LQGGGARALDLLRGLPRVSL-ANLKPNPGSKKPER-----RPRGRRRGRKCGRGHKGERQ 58
++G R LL LP +L +++P SKK E R RGR RGR GRG G R+
Sbjct: 60 IRGNNIRYFILLDSLPLDTLLVDVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGRGGPRR 119
>gi|239048905 checkpoint with forkhead and ring finger domains
isoform 3 [Homo sapiens]
Length = 652
Score = 32.3 bits (72), Expect = 0.51
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 20 PRVSLANLKPNPGSKKPERRPRGRRRGRKCGRGHKGERQRGTRP 63
P S ++L P + E P GR R CG G G +G+ P
Sbjct: 165 PSTSTSDLFPTASASSTEPSPAGRERSSSCGSGGGGISPKGSGP 208
>gi|239048862 checkpoint with forkhead and ring finger domains
isoform 2 [Homo sapiens]
Length = 663
Score = 32.3 bits (72), Expect = 0.51
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 20 PRVSLANLKPNPGSKKPERRPRGRRRGRKCGRGHKGERQRGTRP 63
P S ++L P + E P GR R CG G G +G+ P
Sbjct: 177 PSTSTSDLFPTASASSTEPSPAGRERSSSCGSGGGGISPKGSGP 220
>gi|239048792 checkpoint with forkhead and ring finger domains
isoform 1 [Homo sapiens]
Length = 664
Score = 32.3 bits (72), Expect = 0.51
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 20 PRVSLANLKPNPGSKKPERRPRGRRRGRKCGRGHKGERQRGTRP 63
P S ++L P + E P GR R CG G G +G+ P
Sbjct: 177 PSTSTSDLFPTASASSTEPSPAGRERSSSCGSGGGGISPKGSGP 220
>gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens]
Length = 282
Score = 32.3 bits (72), Expect = 0.51
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 33 SKKPERRPRGRRRGRKCGRGHKGERQRGTR 62
S+ P RR R R RG C R R RG+R
Sbjct: 125 SRSPRRRHRSRSRGPSCSRSRSRSRYRGSR 154
>gi|239753623 PREDICTED: hypothetical protein [Homo sapiens]
Length = 224
Score = 32.0 bits (71), Expect = 0.67
Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 3 GPLQGGGARALDLLRGLPRVSLANLKPNPGSKKPERRPRGRRRGRKCGRGHKGERQRGTR 62
G ++G AR L G RV + PG + +R P+ G GH+ ++ +
Sbjct: 130 GSVEGVAARCRGLPGGFRRVPGRRRQQEPGQRAEQREPQAAAHG-----GHRARARKRSH 184
Query: 63 PRLGFEGGQTPFYIRIPKYGFNEGHSFRRQ 92
P G + +PK G G FR +
Sbjct: 185 PGEGASAERV-----LPKPGAGPGVRFRAE 209
>gi|239748202 PREDICTED: hypothetical protein XP_002346594 [Homo
sapiens]
Length = 224
Score = 32.0 bits (71), Expect = 0.67
Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 3 GPLQGGGARALDLLRGLPRVSLANLKPNPGSKKPERRPRGRRRGRKCGRGHKGERQRGTR 62
G ++G AR L G RV + PG + +R P+ G GH+ ++ +
Sbjct: 130 GSVEGVAARCRGLPGGFRRVPGRRRQQEPGQRAEQREPQAAAHG-----GHRARARKRSH 184
Query: 63 PRLGFEGGQTPFYIRIPKYGFNEGHSFRRQ 92
P G + +PK G G FR +
Sbjct: 185 PGEGASAERV-----LPKPGAGPGVRFRAE 209
>gi|239742100 PREDICTED: hypothetical protein XP_002342435 [Homo
sapiens]
Length = 224
Score = 32.0 bits (71), Expect = 0.67
Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 3 GPLQGGGARALDLLRGLPRVSLANLKPNPGSKKPERRPRGRRRGRKCGRGHKGERQRGTR 62
G ++G AR L G RV + PG + +R P+ G GH+ ++ +
Sbjct: 130 GSVEGVAARCRGLPGGFRRVPGRRRQQEPGQRAEQREPQAAAHG-----GHRARARKRSH 184
Query: 63 PRLGFEGGQTPFYIRIPKYGFNEGHSFRRQ 92
P G + +PK G G FR +
Sbjct: 185 PGEGASAERV-----LPKPGAGPGVRFRAE 209
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 30.4 bits (67), Expect = 1.9
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 25 ANLKPNPGSKKPERRPRGRRRGRKCGRGHKGERQR 59
A + P + P R +G+ +GRK GRG KG+ ++
Sbjct: 231 ATVAPQGEPETPRPRRKGKGKGRKKGRGRKGKGRK 265
>gi|134244285 Notch homolog 3 [Homo sapiens]
Length = 2321
Score = 30.0 bits (66), Expect = 2.5
Identities = 23/68 (33%), Positives = 26/68 (38%), Gaps = 5/68 (7%)
Query: 2 AGPLQGGGARALDLLRGLPRVSLANLKPNPGSKKPERRPRGRRRGRKCGRGHKGERQRGT 61
+GP G L L P L LK K RRP G K G G +G R RG
Sbjct: 2028 SGPRSPPGPHGLGPLLCPPGAFLPGLKAAQSGSKKSRRPPG-----KAGLGPQGPRGRGK 2082
Query: 62 RPRLGFEG 69
+ L G
Sbjct: 2083 KLTLACPG 2090
>gi|32528297 ribosomal protein S6 kinase, polypeptide 5 isoform b
[Homo sapiens]
Length = 549
Score = 30.0 bits (66), Expect = 2.5
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 226 PAKFPEARLELARKYGYILPDITKDELFKMLCTRKDPRQIFFGLAPGWVVNMADKKILK 284
PA P++ +L + Y ++ P I LFK DP Q G+ V N+A ++K
Sbjct: 361 PAALPQSSEKLFQGYSFVAPSI----LFKRNAAVIDPLQFHMGVERPGVTNVARSAMMK 415
>gi|32528295 ribosomal protein S6 kinase, polypeptide 5 isoform a
[Homo sapiens]
Length = 802
Score = 30.0 bits (66), Expect = 2.5
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 226 PAKFPEARLELARKYGYILPDITKDELFKMLCTRKDPRQIFFGLAPGWVVNMADKKILK 284
PA P++ +L + Y ++ P I LFK DP Q G+ V N+A ++K
Sbjct: 361 PAALPQSSEKLFQGYSFVAPSI----LFKRNAAVIDPLQFHMGVERPGVTNVARSAMMK 415
>gi|239756916 PREDICTED: hypothetical protein [Homo sapiens]
Length = 464
Score = 30.0 bits (66), Expect = 2.5
Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 27 LKPNPGSKKPERRPRGRRRGRKCGRGHKGERQRGTRPRLGFEGGQTP 73
L P PG RRP+GRR GR G G G R G+ P
Sbjct: 395 LAPYPGG----RRPQGRRDGRGAGTRGAGRSAAGDEARARGPAGRAP 437
>gi|169161029 PREDICTED: hypothetical protein [Homo sapiens]
Length = 268
Score = 30.0 bits (66), Expect = 2.5
Identities = 23/58 (39%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Query: 16 LRGLPRVSLANLKPNPGSKKPERRPRGRRRGRKCGRGHKGERQRGTRPRLGFEGGQTP 73
L G PR + P P RR R RRR K G G R RG R EGG++P
Sbjct: 77 LEGTPRPAAPGAAPRP------RRQRLRRRRAKVG-GWGCARARGLDRRAPGEGGRSP 127
>gi|239751407 PREDICTED: hypothetical protein XP_002347839 [Homo
sapiens]
Length = 490
Score = 30.0 bits (66), Expect = 2.5
Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 27 LKPNPGSKKPERRPRGRRRGRKCGRGHKGERQRGTRPRLGFEGGQTP 73
L P PG RRP+GRR GR G G G R G+ P
Sbjct: 421 LAPYPGG----RRPQGRRDGRGAGTRGAGRSAAGDEARARGPAGRAP 463
>gi|239747205 PREDICTED: hypothetical protein XP_002346408 [Homo
sapiens]
Length = 152
Score = 30.0 bits (66), Expect = 2.5
Identities = 20/41 (48%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 4 PLQGGGARALDLLRGLPRVSLANLKPNPGSKKPERRPRGRR 44
P GGG R+L LLR L R LA PG + PRGRR
Sbjct: 25 PCPGGGPRSL-LLRRLRRAPLAVGPWAPGRSGRAKGPRGRR 64
>gi|239745917 PREDICTED: hypothetical protein XP_002343616 [Homo
sapiens]
Length = 522
Score = 30.0 bits (66), Expect = 2.5
Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 27 LKPNPGSKKPERRPRGRRRGRKCGRGHKGERQRGTRPRLGFEGGQTP 73
L P PG RRP+GRR GR G G G R G+ P
Sbjct: 453 LAPYPGG----RRPQGRRDGRGAGTRGAGRSAAGDEARARGPAGRAP 495
>gi|5902102 small nuclear ribonucleoprotein D1 polypeptide 16kDa
[Homo sapiens]
Length = 119
Score = 30.0 bits (66), Expect = 2.5
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 5 LQGGGARALDLLRGLPRVSL-ANLKPNPGSKKPER-----RPRGRRRGRKCGRGHKGERQ 58
++G R L LP +L +++P SKK E R RGR RGR GRG G R+
Sbjct: 60 IRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGRGGPRR 119
>gi|88853069 vitronectin precursor [Homo sapiens]
Length = 478
Score = 30.0 bits (66), Expect = 2.5
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 21 RVSLANLKPNPGSKKPERRPRGRRRGRKCGRGH-KGERQRGTRP 63
R+ ++ + P P K +R R+G + RGH +G Q RP
Sbjct: 353 RIYISGMAPRPSLAKKQRFRHRNRKGYRSQRGHSRGRNQNSRRP 396
>gi|10835240 high mobility group nucleosomal binding domain 4
[Homo sapiens]
Length = 90
Score = 29.6 bits (65), Expect = 3.3
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 20 PRVSLANLKPNPGSKKPERRPR--GRRRGRKCGRGHKGERQRG 60
P+ A L P KPE RP+ ++G K +G KG+ G
Sbjct: 21 PQRRSARLSAKPAPPKPEPRPKKASAKKGEKLPKGRKGKADAG 63
>gi|110681708 zinc finger protein 579 [Homo sapiens]
Length = 562
Score = 29.6 bits (65), Expect = 3.3
Identities = 16/36 (44%), Positives = 16/36 (44%)
Query: 29 PNPGSKKPERRPRGRRRGRKCGRGHKGERQRGTRPR 64
P P P R RGR RGR GRG R PR
Sbjct: 6 PPPAQGSPPHRGRGRGRGRGRGRGRGRGRGGAGAPR 41
>gi|239746556 PREDICTED: hypothetical protein XP_002343778 [Homo
sapiens]
Length = 169
Score = 29.3 bits (64), Expect = 4.3
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 2 AGPLQGGGARALDLLRGLPRVSLANLKPNPGSKKPERRPRGRRRGRK 48
A PL G G R L LP ++ A +P S + +R RG R R+
Sbjct: 16 ASPLTGAGCRTL-----LPHLTRALWQPRESSSQTIKRKRGEERKRR 57
>gi|18643383 inositol 1,4,5-trisphosphate 3-kinase C [Homo
sapiens]
Length = 683
Score = 29.3 bits (64), Expect = 4.3
Identities = 23/79 (29%), Positives = 28/79 (35%), Gaps = 8/79 (10%)
Query: 2 AGPLQGGGARALDLLRGLPRVSLANLKPNPGSKKPERRPRG-----RRRGRKCGRGHKGE 56
AG L L+ RG R +P PG+ P RP G R G H
Sbjct: 15 AGALPAAARMGLEAPRGGRRRQPGQQRPGPGAGAPAGRPEGGGPWARTEGSSL---HSEP 71
Query: 57 RQRGTRPRLGFEGGQTPFY 75
+ G P G E Q F+
Sbjct: 72 ERAGLGPAPGTESPQAEFW 90
>gi|239758008 PREDICTED: hypothetical protein XP_002346266 [Homo
sapiens]
Length = 316
Score = 28.9 bits (63), Expect = 5.7
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 32 GSKKPERRPRGRRRGRK-CGRGHKGERQRGTRPR 64
G KKP R + RRRG+K G K + G +PR
Sbjct: 166 GGKKPRRGRKPRRRGQKSTAAGAKSRGEGGKKPR 199
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.142 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,785,082
Number of Sequences: 37866
Number of extensions: 660183
Number of successful extensions: 2261
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 2212
Number of HSP's gapped (non-prelim): 58
length of query: 296
length of database: 18,247,518
effective HSP length: 102
effective length of query: 194
effective length of database: 14,385,186
effective search space: 2790726084
effective search space used: 2790726084
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.