Guide to the Human Genome
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Name: LOC100290030 Sequence: fasta or formatted (224aa) NCBI GI: 239748202
Description:

PREDICTED: hypothetical protein XP_002346594

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.4         21           3
 C cysteine            1.3          3           1
 D aspartate           2.2          5           1
 E glutamate           8.0         18           2
 F phenylalanine       1.8          4           1
 G glycine            10.7         24           2
 H histidine           6.7         15           2
 I isoleucine          2.2          5           1
 K lysine              5.4         12           2
 L leucine             8.0         18           2
 M methionine          1.3          3           1
 N asparagine          1.8          4           1
 P proline             7.1         16           1
 Q glutamine           4.5         10           2
 R arginine           12.1         27           3
 S serine              5.8         13           2
 T threonine           1.8          4           1
 V valine              8.0         18           2
 W tryptophan          0.9          2           1
 Y tyrosine            0.9          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346594 
LOC100292358          1.000   PREDICTED: hypothetical protein 
LOC100288429          1.000   PREDICTED: hypothetical protein XP_002342435 
COL25A1               0.028   collagen, type XXV, alpha 1 isoform 1 
COL25A1               0.028   collagen, type XXV, alpha 1 isoform 2 
LOC100289408          0.025   PREDICTED: hypothetical protein 
LOC100289408          0.025   PREDICTED: hypothetical protein XP_002344217 
LOC401180             0.023   PREDICTED: similar to hCG1745223 
LOC730183             0.023   PREDICTED: hypothetical protein 
LOC401180             0.023   PREDICTED: similar to hCG1745223 
LOC401180             0.023   PREDICTED: similar to hCG1745223 
CDAN1                 0.023   codanin 1 
LOC100293136          0.023   PREDICTED: hypothetical protein 
LOC100290831          0.023   PREDICTED: hypothetical protein XP_002347799 
LOC100287562          0.023   PREDICTED: hypothetical protein XP_002343591 
COL7A1                0.021   alpha 1 type VII collagen precursor 
COL4A5                0.021   type IV collagen alpha 5 isoform 2 precursor 
COL4A5                0.021   type IV collagen alpha 5 isoform 1 precursor 
COL4A5                0.021   type IV collagen alpha 5 isoform 3 precursor 
FLJ37078              0.021   hypothetical protein LOC222183 
COL10A1               0.018   type X collagen alpha 1 precursor 
COL27A1               0.018   collagen, type XXVII, alpha 1 
DDX51                 0.018   DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 
LOC100290372          0.018   PREDICTED: hypothetical protein XP_002346788 
LOC100290263          0.018   PREDICTED: hypothetical protein XP_002347916 
LOC100288606          0.018   PREDICTED: hypothetical protein XP_002342652 
ZCCHC3                0.018   zinc finger, CCHC domain containing 3 
LOC100291674          0.018   PREDICTED: hypothetical protein XP_002345936 
LOC100290526          0.018   PREDICTED: hypothetical protein XP_002346804 
LOC100288875          0.018   PREDICTED: hypothetical protein XP_002342673 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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