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Search of human proteins with 7657709
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7657709 zinc ribbon domain containing 1 [Homo sapiens]
(126 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|25777707 zinc ribbon domain containing 1 [Homo sapiens] 270 2e-73
gi|7657709 zinc ribbon domain containing 1 [Homo sapiens] 270 2e-73
gi|7706499 DNA directed RNA polymerase III polypeptide K [Homo s... 39 0.001
gi|5453930 DNA directed RNA polymerase II polypeptide I [Homo sa... 33 0.044
gi|41350335 transcription elongation factor A (SII), 3 [Homo sap... 33 0.058
gi|239749424 PREDICTED: hypothetical protein XP_002347041 [Homo ... 32 0.17
gi|5803191 transcription elongation factor A 1 isoform 1 [Homo s... 32 0.17
gi|45439355 transcription elongation factor A 1 isoform 2 [Homo ... 32 0.17
gi|38505156 transcription elongation factor A protein 2 isoform ... 30 0.37
gi|4507385 transcription elongation factor A protein 2 isoform a... 30 0.37
gi|14327896 cyclin B1 [Homo sapiens] 28 1.8
gi|72534660 splicing factor, arginine/serine-rich 7 [Homo sapiens] 28 2.4
gi|169164936 PREDICTED: family with sequence similarity 132, mem... 27 4.1
gi|169163362 PREDICTED: hypothetical protein LOC151176 [Homo sap... 27 4.1
gi|38045910 laminin alpha 3 subunit isoform 1 [Homo sapiens] 27 5.4
gi|189217425 laminin alpha 3 subunit isoform 3 [Homo sapiens] 27 5.4
gi|13787217 FAT tumor suppressor 2 precursor [Homo sapiens] 26 7.0
gi|122937185 hypothetical protein LOC57189 [Homo sapiens] 26 7.0
gi|239743232 PREDICTED: hypothetical protein XP_002342775 [Homo ... 26 9.2
gi|54112403 chromodomain helicase DNA binding protein 7 [Homo sa... 26 9.2
gi|118498345 AT-binding transcription factor 1 [Homo sapiens] 26 9.2
gi|17864094 feminization 1 homolog a [Homo sapiens] 26 9.2
gi|38348414 von Willebrand factor C domain containing 2 [Homo sa... 26 9.2
>gi|25777707 zinc ribbon domain containing 1 [Homo sapiens]
Length = 126
Score = 270 bits (691), Expect = 2e-73
Identities = 126/126 (100%), Positives = 126/126 (100%)
Query: 1 MSVMDLANTCSSFQSDLDFCSDCGSVLPLPGAQDTVTCIRCGFNINVRDFEGKVVKTSVV 60
MSVMDLANTCSSFQSDLDFCSDCGSVLPLPGAQDTVTCIRCGFNINVRDFEGKVVKTSVV
Sbjct: 1 MSVMDLANTCSSFQSDLDFCSDCGSVLPLPGAQDTVTCIRCGFNINVRDFEGKVVKTSVV 60
Query: 61 FHQLGTAMPMSVEEGPECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKF 120
FHQLGTAMPMSVEEGPECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKF
Sbjct: 61 FHQLGTAMPMSVEEGPECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKF 120
Query: 121 QEKEDS 126
QEKEDS
Sbjct: 121 QEKEDS 126
>gi|7657709 zinc ribbon domain containing 1 [Homo sapiens]
Length = 126
Score = 270 bits (691), Expect = 2e-73
Identities = 126/126 (100%), Positives = 126/126 (100%)
Query: 1 MSVMDLANTCSSFQSDLDFCSDCGSVLPLPGAQDTVTCIRCGFNINVRDFEGKVVKTSVV 60
MSVMDLANTCSSFQSDLDFCSDCGSVLPLPGAQDTVTCIRCGFNINVRDFEGKVVKTSVV
Sbjct: 1 MSVMDLANTCSSFQSDLDFCSDCGSVLPLPGAQDTVTCIRCGFNINVRDFEGKVVKTSVV 60
Query: 61 FHQLGTAMPMSVEEGPECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKF 120
FHQLGTAMPMSVEEGPECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKF
Sbjct: 61 FHQLGTAMPMSVEEGPECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKF 120
Query: 121 QEKEDS 126
QEKEDS
Sbjct: 121 QEKEDS 126
>gi|7706499 DNA directed RNA polymerase III polypeptide K [Homo
sapiens]
Length = 108
Score = 38.9 bits (89), Expect = 0.001
Identities = 33/106 (31%), Positives = 42/106 (39%), Gaps = 13/106 (12%)
Query: 19 FCSDCGSVLPLPGAQ--DTVTCIRCGF--NINVRDFEGKVVKTSVVFHQLGTAMPM-SVE 73
FC CG+ L + Q C C + NI + K K V LG A +V+
Sbjct: 4 FCPGCGNGLIVEEGQRCHRFACNTCPYVHNITRKVTNRKYPKLKEVDDVLGGAAAWENVD 63
Query: 74 EGPECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCK 119
E CP+C H + Q RSADE T FY C N +
Sbjct: 64 STAES--------CPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQ 101
>gi|5453930 DNA directed RNA polymerase II polypeptide I [Homo
sapiens]
Length = 125
Score = 33.5 bits (75), Expect = 0.044
Identities = 17/100 (17%), Positives = 41/100 (41%), Gaps = 2/100 (2%)
Query: 19 FCSDCGSVL-PLPGAQDTVTCIRCGFNINVRDFEGKVVKTSVVFHQLGTAMPMSVEEGPE 77
FC +C ++L P ++ + C ++ + + + + H++ + + +
Sbjct: 16 FCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIADVSQD 75
Query: 78 CQGP-VVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCT 116
P D C +CGH+ + A++ ++Y CT
Sbjct: 76 PTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCT 115
>gi|41350335 transcription elongation factor A (SII), 3 [Homo
sapiens]
Length = 348
Score = 33.1 bits (74), Expect = 0.058
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 86 RCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNC 118
+C +C + Y+ Q RSADE T F C C
Sbjct: 309 QCSKCKKKNCTYNQVQTRSADEPMTTFVLCNEC 341
>gi|239749424 PREDICTED: hypothetical protein XP_002347041 [Homo
sapiens]
Length = 287
Score = 31.6 bits (70), Expect = 0.17
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 87 CPRCGHEGMAYHTRQMRSADEGQTVFYTCTNC 118
C +C + Y Q RSADE T F C C
Sbjct: 249 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNEC 280
>gi|5803191 transcription elongation factor A 1 isoform 1 [Homo
sapiens]
Length = 301
Score = 31.6 bits (70), Expect = 0.17
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 87 CPRCGHEGMAYHTRQMRSADEGQTVFYTCTNC 118
C +C + Y Q RSADE T F C C
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNEC 294
>gi|45439355 transcription elongation factor A 1 isoform 2 [Homo
sapiens]
Length = 280
Score = 31.6 bits (70), Expect = 0.17
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 87 CPRCGHEGMAYHTRQMRSADEGQTVFYTCTNC 118
C +C + Y Q RSADE T F C C
Sbjct: 242 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNEC 273
>gi|38505156 transcription elongation factor A protein 2 isoform b
[Homo sapiens]
Length = 272
Score = 30.4 bits (67), Expect = 0.37
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 87 CPRCGHEGMAYHTRQMRSADEGQTVFYTCTNC 118
C +C + Y Q RS+DE T F C C
Sbjct: 234 CGKCRKKNCTYTQVQTRSSDEPMTTFVVCNEC 265
>gi|4507385 transcription elongation factor A protein 2 isoform a
[Homo sapiens]
Length = 299
Score = 30.4 bits (67), Expect = 0.37
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 87 CPRCGHEGMAYHTRQMRSADEGQTVFYTCTNC 118
C +C + Y Q RS+DE T F C C
Sbjct: 261 CGKCRKKNCTYTQVQTRSSDEPMTTFVVCNEC 292
>gi|14327896 cyclin B1 [Homo sapiens]
Length = 433
Score = 28.1 bits (61), Expect = 1.8
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 60 VFHQLGTAMPMSVEEGPECQGPVVDRRCPR 89
V QL MPM E P G V+D++ P+
Sbjct: 52 VSEQLQAKMPMKKEAKPSATGKVIDKKLPK 81
>gi|72534660 splicing factor, arginine/serine-rich 7 [Homo sapiens]
Length = 238
Score = 27.7 bits (60), Expect = 2.4
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Query: 47 VRDFEGKVVKTSVVFHQLGTAMP-MSVEEGPECQGPV-VDRRCPRCGHEG-MAY----HT 99
VR +GKV+ S V +L T MP S + P + P + RC CG +G AY ++
Sbjct: 64 VRGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDCHRYS 123
Query: 100 RQMRSADEGQT 110
R+ RS ++
Sbjct: 124 RRRRSRSRSRS 134
>gi|169164936 PREDICTED: family with sequence similarity 132,
member B [Homo sapiens]
Length = 367
Score = 26.9 bits (58), Expect = 4.1
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 64 LGTAMPMSVEEGPECQGPVVDRRCPRCGHE 93
LG+A PMS + P C GP PR G E
Sbjct: 35 LGSASPMSAKSRPRC-GPFPRSHPPRAGGE 63
>gi|169163362 PREDICTED: hypothetical protein LOC151176 [Homo
sapiens]
Length = 367
Score = 26.9 bits (58), Expect = 4.1
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 64 LGTAMPMSVEEGPECQGPVVDRRCPRCGHE 93
LG+A PMS + P C GP PR G E
Sbjct: 35 LGSASPMSAKSRPRC-GPFPRSHPPRAGGE 63
>gi|38045910 laminin alpha 3 subunit isoform 1 [Homo sapiens]
Length = 3333
Score = 26.6 bits (57), Expect = 5.4
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Query: 62 HQLGTAMPMSVEEGPEC--QGPVVDRRCPRC--GHEG 94
H G P EG +C Q V+ R+C RC GH G
Sbjct: 1269 HPTGATGPHCSPEGGQCPCQPNVIGRQCTRCATGHYG 1305
>gi|189217425 laminin alpha 3 subunit isoform 3 [Homo sapiens]
Length = 3277
Score = 26.6 bits (57), Expect = 5.4
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Query: 62 HQLGTAMPMSVEEGPEC--QGPVVDRRCPRC--GHEG 94
H G P EG +C Q V+ R+C RC GH G
Sbjct: 1269 HPTGATGPHCSPEGGQCPCQPNVIGRQCTRCATGHYG 1305
>gi|13787217 FAT tumor suppressor 2 precursor [Homo sapiens]
Length = 4349
Score = 26.2 bits (56), Expect = 7.0
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 63 QLGTAMPMSVEEGPECQGPVVDRRCPRCGHEGMAYHTRQM 102
Q+ +AMPM +GP CQG + G Y T ++
Sbjct: 3717 QMRSAMPMVPCQGPTCQGQICHNTVHLDPKVGPTYSTARL 3756
>gi|122937185 hypothetical protein LOC57189 [Homo sapiens]
Length = 455
Score = 26.2 bits (56), Expect = 7.0
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 19 FCSDCGSVLPLPGAQDTVTCIRCGFNINVRDFEGKVVKTSVV 60
+C C + + LPG T+ + F +NV D E V+ S V
Sbjct: 275 YCCCCLANVSLPGIGGTIPESKPFFYVNVADIESLEVEVSYV 316
>gi|239743232 PREDICTED: hypothetical protein XP_002342775 [Homo
sapiens]
Length = 834
Score = 25.8 bits (55), Expect = 9.2
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 58 SVVFHQLGTAMPMSVEEGPECQGPVVDRRCP 88
S +F + TA P S +EGP GP V P
Sbjct: 309 SPMFKPIFTAPPKSEKEGPTPPGPSVSATAP 339
>gi|54112403 chromodomain helicase DNA binding protein 7 [Homo
sapiens]
Length = 2997
Score = 25.8 bits (55), Expect = 9.2
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 43 FNINVRDFEGKVVKTSVVFHQLGTAMPMSVEEGPE 77
+ + +D +G+V+K S FH + T M + + PE
Sbjct: 1059 YEMYFKDPQGRVIKGSYKFHAIITTFEMILTDCPE 1093
>gi|118498345 AT-binding transcription factor 1 [Homo sapiens]
Length = 3703
Score = 25.8 bits (55), Expect = 9.2
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 98 HTRQMRSADEGQTVFYTCTNCKFQEK 123
H +Q S EG++ +Y C C + K
Sbjct: 1073 HLQQHESGVEGESCYYHCVLCNYSTK 1098
>gi|17864094 feminization 1 homolog a [Homo sapiens]
Length = 617
Score = 25.8 bits (55), Expect = 9.2
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 26 VLPLPGAQDTVTCIRCGFNINVRD 49
V P Q T I CG ++NVRD
Sbjct: 502 VCKFPSLQVTAILIECGADVNVRD 525
>gi|38348414 von Willebrand factor C domain containing 2 [Homo
sapiens]
Length = 325
Score = 25.8 bits (55), Expect = 9.2
Identities = 11/23 (47%), Positives = 12/23 (52%)
Query: 70 MSVEEGPECQGPVVDRRCPRCGH 92
+ EEGP C P R PRC H
Sbjct: 179 LCTEEGPLCAQPECPRLHPRCIH 201
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.135 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,296,915
Number of Sequences: 37866
Number of extensions: 225323
Number of successful extensions: 536
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 512
Number of HSP's gapped (non-prelim): 31
length of query: 126
length of database: 18,247,518
effective HSP length: 90
effective length of query: 36
effective length of database: 14,839,578
effective search space: 534224808
effective search space used: 534224808
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.