Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: ZNRD1 Sequence: fasta or formatted (126aa) NCBI GI: 7657709
Description:

zinc ribbon domain containing 1

Referenced in:

RNA Polymerase and General Transcription Factors

Other entries for this name:
alt mRNA [126aa] zinc ribbon domain containing 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.0          5           1
 C cysteine            7.9         10           1
 D aspartate           7.1          9           1
 E glutamate           6.3          8           2
 F phenylalanine       5.6          7           1
 G glycine             7.9         10           1
 H histidine           2.4          3           1
 I isoleucine          1.6          2           1
 K lysine              3.2          4           1
 L leucine             4.0          5           1
 M methionine          4.8          6           1
 N asparagine          3.2          4           1
 P proline             4.8          6           1
 Q glutamine           5.6          7           1
 R arginine            5.6          7           2
 S serine              7.9         10           2
 T threonine           7.1          9           1
 V valine              9.5         12           2
 W tryptophan          0.0          0           0
 Y tyrosine            1.6          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc ribbon domain containing 1 
ZNRD1                 1.000   zinc ribbon domain containing 1 
POLR3K                0.057   DNA directed RNA polymerase III polypeptide K 
POLR2I                0.033   DNA directed RNA polymerase II polypeptide I 
TCEA3                 0.033   transcription elongation factor A (SII), 3 
LOC100289899          0.029   PREDICTED: hypothetical protein XP_002347041 
TCEA1                 0.029   transcription elongation factor A 1 isoform 1 
TCEA1                 0.029   transcription elongation factor A 1 isoform 2 
TCEA2                 0.020   transcription elongation factor A protein 2 isoform ...
TCEA2                 0.020   transcription elongation factor A protein 2 isoform a...
CCNB1                 0.012   cyclin B1 
SFRS7                 0.012   splicing factor, arginine/serine-rich 7 
FAM132B               0.008   PREDICTED: family with sequence similarity 132, mem...
FAM132B               0.008   PREDICTED: hypothetical protein LOC151176 
LAMA3                 0.008   laminin alpha 3 subunit isoform 1 
LAMA3                 0.008   laminin alpha 3 subunit isoform 3 
FAT2                  0.004   FAT tumor suppressor 2 precursor 
KIAA1147              0.004   hypothetical protein LOC57189 
LOC100288540          0.004   PREDICTED: hypothetical protein XP_002342775 
CHD7                  0.004   chromodomain helicase DNA binding protein 7 
ZFHX3                 0.004   AT-binding transcription factor 1 
FEM1C                 0.004   feminization 1 homolog a 
VWC2                  0.004   von Willebrand factor C domain containing 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press