BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|7657673 vesicle-associated membrane protein 1 isoform 1 [Homo sapiens] (118 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|7657673 vesicle-associated membrane protein 1 isoform 1 [Homo... 239 4e-64 gi|40549446 vesicle-associated membrane protein 1 isoform 2 [Hom... 228 8e-61 gi|9257251 vesicle-associated membrane protein 1 isoform 3 [Homo... 228 8e-61 gi|172072620 vesicle-associated membrane protein 2 (synaptobrevi... 184 1e-47 gi|4759300 vesicle-associated membrane protein 3 [Homo sapiens] 140 3e-34 gi|42544207 vesicle-associated membrane protein 4 [Homo sapiens] 81 2e-16 gi|14043026 vesicle-associated membrane protein 8 [Homo sapiens] 71 2e-13 gi|5730112 vesicle-associated membrane protein 5 [Homo sapiens] 60 4e-10 gi|223468574 vesicle-associated membrane protein 7 isoform 2 [Ho... 48 1e-06 gi|5032137 vesicle-associated membrane protein 7 isoform 1 [Homo... 48 1e-06 gi|59806361 hypothetical protein LOC387104 [Homo sapiens] 44 4e-05 gi|94429050 SEC22 vesicle trafficking protein homolog B [Homo sa... 35 0.013 gi|116235472 SH3-domain GRB2-like (endophilin) interacting prote... 35 0.017 gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens] 32 0.11 gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens] 32 0.11 gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens] 32 0.11 gi|149158692 HLA-B associated transcript-3 isoform a [Homo sapiens] 32 0.11 gi|217416343 fibrosin-like 1 [Homo sapiens] 32 0.14 gi|18079216 CASK interacting protein 1 [Homo sapiens] 31 0.18 gi|14249452 zinc finger CCCH-type containing 10 [Homo sapiens] 31 0.18 gi|190684671 mitogen-activated protein kinase binding protein 1 ... 31 0.18 gi|190684677 mitogen-activated protein kinase binding protein 1 ... 31 0.18 gi|33356148 formin-like 1 [Homo sapiens] 31 0.18 gi|148491080 trinucleotide repeat containing 6B isoform 2 [Homo ... 31 0.24 gi|241982729 trinucleotide repeat containing 6B isoform 1 [Homo ... 31 0.24 gi|32490572 erythrocyte membrane protein band 4.1-like 3 [Homo s... 31 0.24 gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] 31 0.24 gi|5730120 YKT6 v-SNARE protein [Homo sapiens] 31 0.24 gi|4885323 G protein-coupled receptor 37 [Homo sapiens] 30 0.31 gi|33457316 pleckstrin homology domain containing, family O memb... 30 0.31 >gi|7657673 vesicle-associated membrane protein 1 isoform 1 [Homo sapiens] Length = 118 Score = 239 bits (609), Expect = 4e-64 Identities = 118/118 (100%), Positives = 118/118 (100%) Query: 1 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ 60 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ Sbjct: 1 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ 60 Query: 61 KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVIYFFT 118 KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVIYFFT Sbjct: 61 KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVIYFFT 118 >gi|40549446 vesicle-associated membrane protein 1 isoform 2 [Homo sapiens] Length = 117 Score = 228 bits (581), Expect = 8e-61 Identities = 113/113 (100%), Positives = 113/113 (100%) Query: 1 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ 60 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ Sbjct: 1 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ 60 Query: 61 KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIV 113 KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIV Sbjct: 61 KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIV 113 >gi|9257251 vesicle-associated membrane protein 1 isoform 3 [Homo sapiens] Length = 116 Score = 228 bits (581), Expect = 8e-61 Identities = 113/113 (100%), Positives = 113/113 (100%) Query: 1 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ 60 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ Sbjct: 1 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ 60 Query: 61 KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIV 113 KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIV Sbjct: 61 KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIV 113 >gi|172072620 vesicle-associated membrane protein 2 (synaptobrevin 2) [Homo sapiens] Length = 116 Score = 184 bits (467), Expect = 1e-47 Identities = 91/117 (77%), Positives = 102/117 (87%), Gaps = 4/117 (3%) Query: 2 SAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQK 61 +A PPA A GGPP PPPN+TSNRRLQQTQAQV+EVVDI+RVNVDKVLERDQK Sbjct: 4 TAATAPPA----APAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQK 59 Query: 62 LSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVIYFFT 118 LSELDDRADALQAGASQFE+SAAKLKRKYWWKN KMMI+LG ICAII+++I++YF T Sbjct: 60 LSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIIIIVYFST 116 >gi|4759300 vesicle-associated membrane protein 3 [Homo sapiens] Length = 100 Score = 140 bits (352), Expect = 3e-34 Identities = 68/93 (73%), Positives = 79/93 (84%) Query: 23 GPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQKLSELDDRADALQAGASQFESS 82 GP SNRRLQQTQ QV+EVVDI+RVNVDKVLERDQKLSELDDRADALQAGASQFE+S Sbjct: 4 GPTAATGSNRRLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETS 63 Query: 83 AAKLKRKYWWKNCKMMIMLGAICAIIVVVIVIY 115 AAKLKRKYWWKNCKM + + I +++I+++ Sbjct: 64 AAKLKRKYWWKNCKMWAIGITVLVIFIIIIIVW 96 >gi|42544207 vesicle-associated membrane protein 4 [Homo sapiens] Length = 141 Score = 81.3 bits (199), Expect = 2e-16 Identities = 34/95 (35%), Positives = 65/95 (68%), Gaps = 1/95 (1%) Query: 20 GPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQKLSELDDRADALQAGASQF 79 GP GP N +++ Q QV+EV+D+++ N+ KV+ER ++L EL D++++L A+ F Sbjct: 40 GPSGPRFG-PRNDKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAF 98 Query: 80 ESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVI 114 + + +L+R+ WW+ CK+ ++ + AI+++VI+I Sbjct: 99 SNRSKQLRRQMWWRGCKIKAIMALVAAILLLVIII 133 >gi|14043026 vesicle-associated membrane protein 8 [Homo sapiens] Length = 100 Score = 71.2 bits (173), Expect = 2e-13 Identities = 30/85 (35%), Positives = 59/85 (69%) Query: 31 NRRLQQTQAQVEEVVDIIRVNVDKVLERDQKLSELDDRADALQAGASQFESSAAKLKRKY 90 N R++ Q++VE V +I+ NV+++L R + L L ++ + L+A + F++++ K+ RK+ Sbjct: 10 NDRVRNLQSEVEGVKNIMTQNVERILARGENLEHLRNKTEDLEATSEHFKTTSQKVARKF 69 Query: 91 WWKNCKMMIMLGAICAIIVVVIVIY 115 WWKN KM++++ I II++ IV++ Sbjct: 70 WWKNVKMIVLICVIVFIIILFIVLF 94 >gi|5730112 vesicle-associated membrane protein 5 [Homo sapiens] Length = 116 Score = 60.1 bits (144), Expect = 4e-10 Identities = 31/87 (35%), Positives = 52/87 (59%), Gaps = 5/87 (5%) Query: 34 LQQTQAQVEEVVDIIRVNVDKVLERDQKLSELDDRADALQAGASQFESSAAKLKRKYWWK 93 L++ Q Q EV +I+R N KVLER KL+EL R+D L +S F + L +K W+ Sbjct: 6 LERCQQQANEVTEIMRNNFGKVLERGVKLAELQQRSDQLLDMSSTFNKTTQNLAQKKCWE 65 Query: 94 N-----CKMMIMLGAICAIIVVVIVIY 115 N C ++++G + I++V++V++ Sbjct: 66 NIRYRICVGLVVVGVLLIILIVLLVVF 92 >gi|223468574 vesicle-associated membrane protein 7 isoform 2 [Homo sapiens] Length = 179 Score = 48.1 bits (113), Expect = 1e-06 Identities = 24/81 (29%), Positives = 48/81 (59%) Query: 33 RLQQTQAQVEEVVDIIRVNVDKVLERDQKLSELDDRADALQAGASQFESSAAKLKRKYWW 92 ++ +TQAQV+E+ I+ N+D V +R ++L L D+ + L + F++++ L R Sbjct: 84 KVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCM 143 Query: 93 KNCKMMIMLGAICAIIVVVIV 113 KN K+ I++ + + + +IV Sbjct: 144 KNLKLTIIIIIVSIVFIYIIV 164 >gi|5032137 vesicle-associated membrane protein 7 isoform 1 [Homo sapiens] Length = 220 Score = 48.1 bits (113), Expect = 1e-06 Identities = 24/81 (29%), Positives = 48/81 (59%) Query: 33 RLQQTQAQVEEVVDIIRVNVDKVLERDQKLSELDDRADALQAGASQFESSAAKLKRKYWW 92 ++ +TQAQV+E+ I+ N+D V +R ++L L D+ + L + F++++ L R Sbjct: 125 KVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCM 184 Query: 93 KNCKMMIMLGAICAIIVVVIV 113 KN K+ I++ + + + +IV Sbjct: 185 KNLKLTIIIIIVSIVFIYIIV 205 >gi|59806361 hypothetical protein LOC387104 [Homo sapiens] Length = 947 Score = 43.5 bits (101), Expect = 4e-05 Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 5/101 (4%) Query: 1 MSAPAQPPAEGTEGTAPGGG--PPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLER 58 M+A A+ P + EG+A GGG PP + ++LQ+ + EE+ + N E Sbjct: 311 MAAAAEGPQQSAEGSASGGGMQAAAPPSSQPHPQQLQEQEEMQEEMEKLREENETLKNEI 370 Query: 59 DQKLSELDDRADA-LQAGASQFESSAAKLKRKYWWKNCKMM 98 D+ +E+D+ D + A Q + +L+R KNC+++ Sbjct: 371 DELRTEMDEMRDTFFEEDACQLQEMRHELERAN--KNCRIL 409 >gi|94429050 SEC22 vesicle trafficking protein homolog B [Homo sapiens] Length = 215 Score = 35.0 bits (79), Expect = 0.013 Identities = 20/86 (23%), Positives = 43/86 (50%), Gaps = 7/86 (8%) Query: 30 SNRRLQQTQAQVEEVVDIIRVNVDKVLERDQKLSELDDRADALQAGASQFESSAAKLKRK 89 + R L ++++V I+ N+++VL+R + LS LD +A+ L + + ++ A L Sbjct: 131 ARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKYRQDAKYL--- 187 Query: 90 YWWKNCKMMIMLGAICAIIVVVIVIY 115 N A A+ +++++Y Sbjct: 188 ----NMHSTYAKLAAVAVFFIMLIVY 209 >gi|116235472 SH3-domain GRB2-like (endophilin) interacting protein 1 [Homo sapiens] Length = 828 Score = 34.7 bits (78), Expect = 0.017 Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 3/43 (6%) Query: 4 PAQPPAEGTEGT-APGG--GPPGPPPNMTSNRRLQQTQAQVEE 43 PA PA G G P G GPPGPP N+ S L++ Q +V E Sbjct: 343 PADSPAPGPLGPPGPTGPPGPPGPPRNVLSPLNLEEVQKKVAE 385 >gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens] Length = 1126 Score = 32.0 bits (71), Expect = 0.11 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 7 PPAEGTEGTAPGGGPPGP-PPNMTSNRRLQQTQAQVEEVVDIIRVNV 52 P + E +A G PPGP PP TS+ R+ + Q E V ++ +N+ Sbjct: 409 PSSTNVESSAEGAPPPGPAPPPATSHPRVIRISHQSVEPVVMMHMNI 455 Score = 25.8 bits (55), Expect = 7.7 Identities = 14/25 (56%), Positives = 14/25 (56%), Gaps = 1/25 (4%) Query: 3 APAQPPAEGTEGTAPGGGPPGPPPN 27 APAQ P E T G AP G P P N Sbjct: 237 APAQNP-ELTPGPAPAGPTPAPETN 260 >gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens] Length = 1126 Score = 32.0 bits (71), Expect = 0.11 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 7 PPAEGTEGTAPGGGPPGP-PPNMTSNRRLQQTQAQVEEVVDIIRVNV 52 P + E +A G PPGP PP TS+ R+ + Q E V ++ +N+ Sbjct: 409 PSSTNVESSAEGAPPPGPAPPPATSHPRVIRISHQSVEPVVMMHMNI 455 Score = 25.8 bits (55), Expect = 7.7 Identities = 14/25 (56%), Positives = 14/25 (56%), Gaps = 1/25 (4%) Query: 3 APAQPPAEGTEGTAPGGGPPGPPPN 27 APAQ P E T G AP G P P N Sbjct: 237 APAQNP-ELTPGPAPAGPTPAPETN 260 >gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens] Length = 1126 Score = 32.0 bits (71), Expect = 0.11 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 7 PPAEGTEGTAPGGGPPGP-PPNMTSNRRLQQTQAQVEEVVDIIRVNV 52 P + E +A G PPGP PP TS+ R+ + Q E V ++ +N+ Sbjct: 409 PSSTNVESSAEGAPPPGPAPPPATSHPRVIRISHQSVEPVVMMHMNI 455 Score = 25.8 bits (55), Expect = 7.7 Identities = 14/25 (56%), Positives = 14/25 (56%), Gaps = 1/25 (4%) Query: 3 APAQPPAEGTEGTAPGGGPPGPPPN 27 APAQ P E T G AP G P P N Sbjct: 237 APAQNP-ELTPGPAPAGPTPAPETN 260 >gi|149158692 HLA-B associated transcript-3 isoform a [Homo sapiens] Length = 1132 Score = 32.0 bits (71), Expect = 0.11 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 7 PPAEGTEGTAPGGGPPGP-PPNMTSNRRLQQTQAQVEEVVDIIRVNV 52 P + E +A G PPGP PP TS+ R+ + Q E V ++ +N+ Sbjct: 415 PSSTNVESSAEGAPPPGPAPPPATSHPRVIRISHQSVEPVVMMHMNI 461 Score = 25.8 bits (55), Expect = 7.7 Identities = 14/25 (56%), Positives = 14/25 (56%), Gaps = 1/25 (4%) Query: 3 APAQPPAEGTEGTAPGGGPPGPPPN 27 APAQ P E T G AP G P P N Sbjct: 243 APAQNP-ELTPGPAPAGPTPAPETN 266 >gi|217416343 fibrosin-like 1 [Homo sapiens] Length = 1045 Score = 31.6 bits (70), Expect = 0.14 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%) Query: 11 GTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVD---IIRVNVDKVLERDQKL 62 G G P G P P RR +++ +Q EEV+D I + + LE+D L Sbjct: 48 GLRGAPPRGAAPAPRTARPPRRRRRESSSQEEEVIDGFAIASFSTLEALEKDMAL 102 >gi|18079216 CASK interacting protein 1 [Homo sapiens] Length = 1431 Score = 31.2 bits (69), Expect = 0.18 Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 19/93 (20%) Query: 1 MSAPAQPPAEGTEGTAPGGGPPGPP----PNMTSNRRLQQTQAQVEEVVDIIRVNV---- 52 + PA+PP A PP PP P ++ ++L++T A + + + + Sbjct: 1336 LHVPAKPPRAAAAAAAAAAAPPAPPEGASPGDSARQKLEETSACLAAALQAVEEKIRQED 1395 Query: 53 -----DKVLER------DQKLSELDDRADALQA 74 D E+ D S DD AD L A Sbjct: 1396 AQGPRDSAAEKSTGSILDDIGSMFDDLADQLDA 1428 >gi|14249452 zinc finger CCCH-type containing 10 [Homo sapiens] Length = 434 Score = 31.2 bits (69), Expect = 0.18 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 5/43 (11%) Query: 3 APAQPPAEGTEGTAPGGGPPGPPPNMTS-----NRRLQQTQAQ 40 APA PA AP PP PPP++T + L QT AQ Sbjct: 333 APAGAPAAPPTNAAPPAAPPPPPPHLTPEITPLSAALAQTIAQ 375 >gi|190684671 mitogen-activated protein kinase binding protein 1 isoform a [Homo sapiens] Length = 1508 Score = 31.2 bits (69), Expect = 0.18 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%) Query: 1 MSAPAQ-PPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVD 53 MS PAQ P A G + G PPG PP + + Q ++ R+N D Sbjct: 1117 MSRPAQVPQASGEQPRGNGANPPGAPPEVEPSSGNPSPQQAASVLLPRCRLNPD 1170 >gi|190684677 mitogen-activated protein kinase binding protein 1 isoform b [Homo sapiens] Length = 1514 Score = 31.2 bits (69), Expect = 0.18 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%) Query: 1 MSAPAQ-PPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVD 53 MS PAQ P A G + G PPG PP + + Q ++ R+N D Sbjct: 1123 MSRPAQVPQASGEQPRGNGANPPGAPPEVEPSSGNPSPQQAASVLLPRCRLNPD 1176 >gi|33356148 formin-like 1 [Homo sapiens] Length = 1100 Score = 31.2 bits (69), Expect = 0.18 Identities = 12/23 (52%), Positives = 13/23 (56%) Query: 4 PAQPPAEGTEGTAPGGGPPGPPP 26 P PP GT+G P PP PPP Sbjct: 589 PPPPPPPGTDGPVPPPPPPPPPP 611 Score = 26.6 bits (57), Expect = 4.5 Identities = 11/24 (45%), Positives = 12/24 (50%) Query: 3 APAQPPAEGTEGTAPGGGPPGPPP 26 +P PPA G P PP PPP Sbjct: 571 SPEPPPAPPLPGDLPPPPPPPPPP 594 >gi|148491080 trinucleotide repeat containing 6B isoform 2 [Homo sapiens] Length = 1723 Score = 30.8 bits (68), Expect = 0.24 Identities = 12/23 (52%), Positives = 13/23 (56%) Query: 4 PAQPPAEGTEGTAPGGGPPGPPP 26 P QPP E + GGPP PPP Sbjct: 826 PQQPPPPQPEASGSWGGPPPPPP 848 >gi|241982729 trinucleotide repeat containing 6B isoform 1 [Homo sapiens] Length = 1833 Score = 30.8 bits (68), Expect = 0.24 Identities = 12/23 (52%), Positives = 13/23 (56%) Query: 4 PAQPPAEGTEGTAPGGGPPGPPP 26 P QPP E + GGPP PPP Sbjct: 826 PQQPPPPQPEASGSWGGPPPPPP 848 >gi|32490572 erythrocyte membrane protein band 4.1-like 3 [Homo sapiens] Length = 1087 Score = 30.8 bits (68), Expect = 0.24 Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 8/101 (7%) Query: 9 AEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLE------RDQKL 62 A G +G A G P PP + L+Q A + R DK E + + Sbjct: 22 AAGAQGRA--GAPVPEPPKEEQQQALEQFAAAAAHSTPVRREVTDKEQEFAARAAKQLEY 79 Query: 63 SELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGA 103 +L+D + ++ +S+ S K+ +K CK++++ G+ Sbjct: 80 QQLEDDKLSQKSSSSKLSRSPLKIVKKPKSMQCKVILLDGS 120 >gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] Length = 680 Score = 30.8 bits (68), Expect = 0.24 Identities = 16/26 (61%), Positives = 17/26 (65%), Gaps = 3/26 (11%) Query: 3 APAQPPAEGTEGT--APG-GGPPGPP 25 AP QP GT+G APG GPPGPP Sbjct: 271 APGQPGIPGTKGLPGAPGIAGPPGPP 296 >gi|5730120 YKT6 v-SNARE protein [Homo sapiens] Length = 198 Score = 30.8 bits (68), Expect = 0.24 Identities = 14/52 (26%), Positives = 30/52 (57%) Query: 34 LQQTQAQVEEVVDIIRVNVDKVLERDQKLSELDDRADALQAGASQFESSAAK 85 + + QA+++E I+ ++ +LER +KL +L +++ L + F +A K Sbjct: 139 MTKVQAELDETKIILHNTMESLLERGEKLDDLVSKSEVLGTQSKAFYKTARK 190 >gi|4885323 G protein-coupled receptor 37 [Homo sapiens] Length = 613 Score = 30.4 bits (67), Expect = 0.31 Identities = 12/24 (50%), Positives = 14/24 (58%) Query: 2 SAPAQPPAEGTEGTAPGGGPPGPP 25 +AP + PA G A GPPGPP Sbjct: 90 AAPGRDPAAGRGAEASAAGPPGPP 113 >gi|33457316 pleckstrin homology domain containing, family O member 2 [Homo sapiens] Length = 490 Score = 30.4 bits (67), Expect = 0.31 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%) Query: 4 PAQPPAEGTEGTAP--GGGPPGPPPNMTSNR 32 P+Q P T AP GG PP PPP + S + Sbjct: 290 PSQAPCSETSEAAPREGGKPPTPPPKILSEK 320 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.317 0.133 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 5,434,841 Number of Sequences: 37866 Number of extensions: 265600 Number of successful extensions: 5066 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 173 Number of HSP's successfully gapped in prelim test: 144 Number of HSP's that attempted gapping in prelim test: 3687 Number of HSP's gapped (non-prelim): 1518 length of query: 118 length of database: 18,247,518 effective HSP length: 88 effective length of query: 30 effective length of database: 14,915,310 effective search space: 447459300 effective search space used: 447459300 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.