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Search of human proteins with 7657649
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7657649 tropomodulin 3 (ubiquitous) [Homo sapiens]
(352 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7657649 tropomodulin 3 (ubiquitous) [Homo sapiens] 697 0.0
gi|7657647 neuronal tropomodulin isoform a [Homo sapiens] 535 e-152
gi|218931148 neuronal tropomodulin isoform b [Homo sapiens] 454 e-128
gi|4507553 tropomodulin 1 [Homo sapiens] 431 e-121
gi|156415984 tropomodulin 4 (muscle) [Homo sapiens] 389 e-108
gi|150378503 leiomodin 2 (cardiac) [Homo sapiens] 231 6e-61
gi|54607116 leiomodin 3 (fetal) [Homo sapiens] 159 3e-39
gi|112380630 leiomodin 1 (smooth muscle) [Homo sapiens] 155 7e-38
gi|5174617 nucleotide-binding oligomerization domain containing ... 63 3e-10
gi|118918429 NOD3 protein [Homo sapiens] 51 2e-06
gi|229577123 t-complex-associated testis expressed 1 [Homo sapiens] 50 4e-06
gi|168986655 hypothetical protein LOC145497 [Homo sapiens] 42 0.001
gi|11545912 nucleotide-binding oligomerization domain containing... 39 0.007
gi|66392157 RGD motif, leucine rich repeats, tropomodulin domain... 38 0.016
gi|194018482 NLR family, pyrin domain containing 4 [Homo sapiens] 33 0.29
gi|33667040 NLR family, pyrin domain containing 8 [Homo sapiens] 33 0.50
gi|38569471 MUF1 protein [Homo sapiens] 33 0.50
gi|7705558 inositol-3-phosphate synthase 1 [Homo sapiens] 32 0.66
gi|163965441 hypothetical protein LOC149499 [Homo sapiens] 32 0.66
gi|46255064 synaptotagmin-like 2 isoform d [Homo sapiens] 31 1.9
gi|46255062 synaptotagmin-like 2 isoform c [Homo sapiens] 31 1.9
gi|5453726 leucine rich repeat (in FLII) interacting protein 2 i... 31 1.9
gi|10190742 ubiquitin specific peptidase 29 [Homo sapiens] 31 1.9
gi|21955154 NLR family, pyrin domain containing 12 isoform 2 [Ho... 31 1.9
gi|4507531 toll-like receptor 3 [Homo sapiens] 30 2.5
gi|158321897 NACHT, LRR and PYD containing protein 5 [Homo sapiens] 30 2.5
gi|215982794 myosin VA isoform 2 [Homo sapiens] 30 2.5
gi|215982791 myosin VA isoform 1 [Homo sapiens] 30 2.5
gi|210147567 hypothetical protein LOC220081 [Homo sapiens] 30 2.5
gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin ... 30 2.5
>gi|7657649 tropomodulin 3 (ubiquitous) [Homo sapiens]
Length = 352
Score = 697 bits (1798), Expect = 0.0
Identities = 352/352 (100%), Positives = 352/352 (100%)
Query: 1 MALPFRKDLEKYKDLDEDELLGNLSETELKQLETVLDDLDPENALLPAGFRQKNQTSKST 60
MALPFRKDLEKYKDLDEDELLGNLSETELKQLETVLDDLDPENALLPAGFRQKNQTSKST
Sbjct: 1 MALPFRKDLEKYKDLDEDELLGNLSETELKQLETVLDDLDPENALLPAGFRQKNQTSKST 60
Query: 61 TGPFDREHLLSYLEKEALEHKDREDYVPYTGEKKGKIFIPKQKPVQTFTEEKVSLDPELE 120
TGPFDREHLLSYLEKEALEHKDREDYVPYTGEKKGKIFIPKQKPVQTFTEEKVSLDPELE
Sbjct: 61 TGPFDREHLLSYLEKEALEHKDREDYVPYTGEKKGKIFIPKQKPVQTFTEEKVSLDPELE 120
Query: 121 EALTSASDTELCDLAAILGMHNLITNTKFCNIMGSSNGVDQEHFSNVVKGEKILPVFDEP 180
EALTSASDTELCDLAAILGMHNLITNTKFCNIMGSSNGVDQEHFSNVVKGEKILPVFDEP
Sbjct: 121 EALTSASDTELCDLAAILGMHNLITNTKFCNIMGSSNGVDQEHFSNVVKGEKILPVFDEP 180
Query: 181 PNPTNVEESLKRTKENDAHLVEVNLNNIKNIPIPTLKDFAKALETNTHVKCFSLAATRSN 240
PNPTNVEESLKRTKENDAHLVEVNLNNIKNIPIPTLKDFAKALETNTHVKCFSLAATRSN
Sbjct: 181 PNPTNVEESLKRTKENDAHLVEVNLNNIKNIPIPTLKDFAKALETNTHVKCFSLAATRSN 240
Query: 241 DPVATAFAEMLKVNKTLKSLNVESNFITGVGILALIDALRDNETLAELKIDNQRQQLGTA 300
DPVATAFAEMLKVNKTLKSLNVESNFITGVGILALIDALRDNETLAELKIDNQRQQLGTA
Sbjct: 241 DPVATAFAEMLKVNKTLKSLNVESNFITGVGILALIDALRDNETLAELKIDNQRQQLGTA 300
Query: 301 VELEMAKMLEENTNILKFGYQFTQQGPRTRAANAITKNNDLVRKRRVEGDHQ 352
VELEMAKMLEENTNILKFGYQFTQQGPRTRAANAITKNNDLVRKRRVEGDHQ
Sbjct: 301 VELEMAKMLEENTNILKFGYQFTQQGPRTRAANAITKNNDLVRKRRVEGDHQ 352
>gi|7657647 neuronal tropomodulin isoform a [Homo sapiens]
Length = 351
Score = 535 bits (1377), Expect = e-152
Identities = 267/352 (75%), Positives = 310/352 (88%), Gaps = 1/352 (0%)
Query: 1 MALPFRKDLEKYKDLDEDELLGNLSETELKQLETVLDDLDPENALLPAGFRQKNQTSKST 60
MALPF+K+LEKYK++DEDELLG LSE ELKQLE VLDDLDPE+A+LPAGFRQK+QT K+
Sbjct: 1 MALPFQKELEKYKNIDEDELLGKLSEEELKQLENVLDDLDPESAMLPAGFRQKDQTQKAA 60
Query: 61 TGPFDREHLLSYLEKEALEHKDREDYVPYTGEKKGKIFIPKQKPVQTFTEEKVSLDPELE 120
TGPFDREHLL YLEKEALE KDRED+VP+TGEKKG++FIPK+KP++T EEKV+LDPELE
Sbjct: 61 TGPFDREHLLMYLEKEALEQKDREDFVPFTGEKKGRVFIPKEKPIETRKEEKVTLDPELE 120
Query: 121 EALTSASDTELCDLAAILGMHNLITNTKFCNIMGSSNGVDQEHFSNVVKGEKILPVFDEP 180
EAL SASDTEL DLAA+LG+HNL+ N KF ++ G + NVVKGEK+ PVF+EP
Sbjct: 121 EALASASDTELYDLAAVLGVHNLLNNPKFDEETANNKG-GKGPVRNVVKGEKVKPVFEEP 179
Query: 181 PNPTNVEESLKRTKENDAHLVEVNLNNIKNIPIPTLKDFAKALETNTHVKCFSLAATRSN 240
PNPTNVE SL++ K ND L EVNLNNIKNIPIPTL++FAKALETNTHVK FSLAATRSN
Sbjct: 180 PNPTNVEISLQQMKANDPSLQEVNLNNIKNIPIPTLREFAKALETNTHVKKFSLAATRSN 239
Query: 241 DPVATAFAEMLKVNKTLKSLNVESNFITGVGILALIDALRDNETLAELKIDNQRQQLGTA 300
DPVA AFA+MLKVNKTL SLN+ESNFITG GILAL++AL++N+TL E+KIDNQRQQLGTA
Sbjct: 240 DPVAIAFADMLKVNKTLTSLNIESNFITGTGILALVEALKENDTLTEIKIDNQRQQLGTA 299
Query: 301 VELEMAKMLEENTNILKFGYQFTQQGPRTRAANAITKNNDLVRKRRVEGDHQ 352
VE+E+A+MLEEN+ ILKFGYQFT+QGPRTR A AITKNNDLVRK+RVE D +
Sbjct: 300 VEMEIAQMLEENSRILKFGYQFTKQGPRTRVAAAITKNNDLVRKKRVEADRR 351
>gi|218931148 neuronal tropomodulin isoform b [Homo sapiens]
Length = 315
Score = 454 bits (1169), Expect = e-128
Identities = 235/352 (66%), Positives = 276/352 (78%), Gaps = 37/352 (10%)
Query: 1 MALPFRKDLEKYKDLDEDELLGNLSETELKQLETVLDDLDPENALLPAGFRQKNQTSKST 60
MALPF+K+LEKYK++DEDELLG LSE ELKQLE VLDDLDPE+A+LPAGFRQK+QT K+
Sbjct: 1 MALPFQKELEKYKNIDEDELLGKLSEEELKQLENVLDDLDPESAMLPAGFRQKDQTQKAA 60
Query: 61 TGPFDREHLLSYLEKEALEHKDREDYVPYTGEKKGKIFIPKQKPVQTFTEEKVSLDPELE 120
TGPFDREHLL YLEKEALE KDRED+VP+TGEKKG++FIPK+KP++T EEKV+LDPELE
Sbjct: 61 TGPFDREHLLMYLEKEALEQKDREDFVPFTGEKKGRVFIPKEKPIETRKEEKVTLDPELE 120
Query: 121 EALTSASDTELCDLAAILGMHNLITNTKFCNIMGSSNGVDQEHFSNVVKGEKILPVFDEP 180
EAL SASDTEL DLAA+LG+HNL+ N KF ++ G + NVVKGEK+ PVF+EP
Sbjct: 121 EALASASDTELYDLAAVLGVHNLLNNPKFDEETANNKG-GKGPVRNVVKGEKVKPVFEEP 179
Query: 181 PNPTNVEESLKRTKENDAHLVEVNLNNIKNIPIPTLKDFAKALETNTHVKCFSLAATRSN 240
PNPTNVE SL++ K ND L EVNLNNIK
Sbjct: 180 PNPTNVEISLQQMKANDPSLQEVNLNNIK------------------------------- 208
Query: 241 DPVATAFAEMLKVNKTLKSLNVESNFITGVGILALIDALRDNETLAELKIDNQRQQLGTA 300
AFA+MLKVNKTL SLN+ESNFITG GILAL++AL++N+TL E+KIDNQRQQLGTA
Sbjct: 209 -----AFADMLKVNKTLTSLNIESNFITGTGILALVEALKENDTLTEIKIDNQRQQLGTA 263
Query: 301 VELEMAKMLEENTNILKFGYQFTQQGPRTRAANAITKNNDLVRKRRVEGDHQ 352
VE+E+A+MLEEN+ ILKFGYQFT+QGPRTR A AITKNNDLVRK+RVE D +
Sbjct: 264 VEMEIAQMLEENSRILKFGYQFTKQGPRTRVAAAITKNNDLVRKKRVEADRR 315
>gi|4507553 tropomodulin 1 [Homo sapiens]
Length = 359
Score = 431 bits (1107), Expect = e-121
Identities = 215/345 (62%), Positives = 275/345 (79%), Gaps = 1/345 (0%)
Query: 3 LPFRKDLEKYKDLDEDELLGNLSETELKQLETVLDDLDPENALLPAGFRQKNQTSKSTTG 62
+ +R++LEKY+DLDEDE+LG L+E EL+ LE LD+LDP+NALLPAG RQK+QT+K+ TG
Sbjct: 1 MSYRRELEKYRDLDEDEILGALTEEELRTLENELDELDPDNALLPAGLRQKDQTTKAPTG 60
Query: 63 PFDREHLLSYLEKEALEHKDREDYVPYTGEKKGKIFIPKQKPVQTFTEEKVSLDPELEEA 122
PF RE LL +LEK+A E KDRED VPYTGEK+GK+++PKQKP+ E V+L+PELEEA
Sbjct: 61 PFKREELLDHLEKQAKEFKDREDLVPYTGEKRGKVWVPKQKPLDPVLES-VTLEPELEEA 119
Query: 123 LTSASDTELCDLAAILGMHNLITNTKFCNIMGSSNGVDQEHFSNVVKGEKILPVFDEPPN 182
L +ASD ELCD+AAILGMH L++N ++ + SS+ +++E ++V+K + PV DE PN
Sbjct: 120 LANASDAELCDIAAILGMHTLMSNQQYYQALSSSSIMNKEGLNSVIKPTQYKPVPDEEPN 179
Query: 183 PTNVEESLKRTKENDAHLVEVNLNNIKNIPIPTLKDFAKALETNTHVKCFSLAATRSNDP 242
T+VEE+L+R K ND L EVNLNNI+NIPIPTLK +A+AL+ N++VK FS+ TRSNDP
Sbjct: 180 STDVEETLERIKNNDPKLEEVNLNNIRNIPIPTLKAYAEALKENSYVKKFSIVGTRSNDP 239
Query: 243 VATAFAEMLKVNKTLKSLNVESNFITGVGILALIDALRDNETLAELKIDNQRQQLGTAVE 302
VA A AEMLK NK LK+LNVESNFI+G GIL L++AL N +L E+KIDNQ Q LG VE
Sbjct: 240 VAYALAEMLKENKVLKTLNVESNFISGAGILRLVEALPYNTSLVEMKIDNQSQPLGNKVE 299
Query: 303 LEMAKMLEENTNILKFGYQFTQQGPRTRAANAITKNNDLVRKRRV 347
+E+ MLE+N +LKFGY FTQQGPR RA+NA+ NNDLVRKRR+
Sbjct: 300 MEIVSMLEKNATLLKFGYHFTQQGPRLRASNAMMNNNDLVRKRRL 344
>gi|156415984 tropomodulin 4 (muscle) [Homo sapiens]
Length = 345
Score = 389 bits (999), Expect = e-108
Identities = 189/342 (55%), Positives = 266/342 (77%), Gaps = 2/342 (0%)
Query: 5 FRKDLEKYKDLDEDELLGNLSETELKQLETVLDDLDPENALLPAGFRQKNQTSKSTTGPF 64
++K+LEKY+D+DEDE+L LS EL+QL+ L ++DPEN LLPAG RQ++QT KS TGP
Sbjct: 4 YQKELEKYRDIDEDEILRTLSPEELEQLDCELQEMDPENMLLPAGLRQRDQTKKSPTGPL 63
Query: 65 DREHLLSYLEKEALEHKDREDYVPYTGEKKGKIFIPKQKPVQTFTEEKVSLDPELEEALT 124
DRE LL YLE++ALE K+R+D VP+TGEKKGK +I ++ + EE+++L+PELEEAL
Sbjct: 64 DREALLQYLEQQALEVKERDDLVPFTGEKKGKPYIQPKREIPA--EEQITLEPELEEALA 121
Query: 125 SASDTELCDLAAILGMHNLITNTKFCNIMGSSNGVDQEHFSNVVKGEKILPVFDEPPNPT 184
A+D E+CD+AAIL M+ L++N ++ + + S + E S+VV+ +K PV DEPPNPT
Sbjct: 122 HATDAEMCDIAAILDMYTLMSNKQYYDALCSGEICNTEGISSVVQPDKYKPVPDEPPNPT 181
Query: 185 NVEESLKRTKENDAHLVEVNLNNIKNIPIPTLKDFAKALETNTHVKCFSLAATRSNDPVA 244
N+EE LKR + ND L EVNLNNI++IPIP L + +A++ NT+V+ FSL ATRS DP+A
Sbjct: 182 NIEEILKRVRSNDKELEEVNLNNIQDIPIPMLSELCEAMKANTYVRSFSLVATRSGDPIA 241
Query: 245 TAFAEMLKVNKTLKSLNVESNFITGVGILALIDALRDNETLAELKIDNQRQQLGTAVELE 304
A A+ML+ N++L+SLN+ESNFI+ G++A++ A+R+N TL EL++DNQRQ G AVE+E
Sbjct: 242 NAVADMLRENRSLQSLNIESNFISSTGLMAVLKAVRENATLTELRVDNQRQWPGDAVEME 301
Query: 305 MAKMLEENTNILKFGYQFTQQGPRTRAANAITKNNDLVRKRR 346
MA +LE+ +I++FGY FTQQGPR RAA A+T+NN+L R+++
Sbjct: 302 MATVLEQCPSIVRFGYHFTQQGPRARAAQAMTRNNELRRQQK 343
>gi|150378503 leiomodin 2 (cardiac) [Homo sapiens]
Length = 547
Score = 231 bits (590), Expect = 6e-61
Identities = 149/365 (40%), Positives = 209/365 (57%), Gaps = 22/365 (6%)
Query: 5 FRKDLEKYKDLDEDELLGNLSETELKQLETVLDDLDPENALLPAGFRQKNQTSKSTTGPF 64
+R+ L KY+ +DEDELL +LS ELK+LE L+D++P+ L P G RQK+ T K+ TG F
Sbjct: 6 YRRGLSKYESIDEDELLASLSAEELKELERELEDIEPDRNL-PVGLRQKSLTEKTPTGTF 64
Query: 65 DREHLLSYLEKEA--LEHKDREDYVPYTGEKKGK-----IFIPKQKPV--QTFTEEKVSL 115
RE L++Y EKE+ L K+R E K + IF V + +TEE+
Sbjct: 65 SREALMAYWEKESQKLLEKERLGECGKVAEDKEESEEELIFTESNSEVSEEVYTEEEEEE 124
Query: 116 DPELEEALTSASDTELCDLAAILGMHNLIT-------NTKFCNIMGSSNGVDQEHFSNVV 168
E EE SD E + G++ + N+K ++ + SN
Sbjct: 125 SQEEEEE--EDSDEEERTIETAKGINGTVNYDSVNSDNSKPKIFKSQIENINLTNGSNGR 182
Query: 169 KGEKILPVFDEP-PNPTNVEESLKRTKENDAHLVEVNLNNIKNIPIPTLKDFAKALETNT 227
E P P NPT +E++L + K ND EVNLNNI+NI TL FA+AL+ NT
Sbjct: 183 NTES--PAAIHPCGNPTVIEDALDKIKSNDPDTTEVNLNNIENITTQTLTRFAEALKDNT 240
Query: 228 HVKCFSLAATRSNDPVATAFAEMLKVNKTLKSLNVESNFITGVGILALIDALRDNETLAE 287
VK FSLA T ++D A A AEMLKVN+ + ++NVESNFITG GILA++ AL+ N L E
Sbjct: 241 VVKTFSLANTHADDSAAMAIAEMLKVNEHITNVNVESNFITGKGILAIMRALQHNTVLTE 300
Query: 288 LKIDNQRQQLGTAVELEMAKMLEENTNILKFGYQFTQQGPRTRAANAITKNNDLVRKRRV 347
L+ NQR +G+ VE+E+ K+L+ENT +L+ GY F GPR + +T+N D R++R+
Sbjct: 301 LRFHNQRHIMGSQVEMEIVKLLKENTTLLRLGYHFELPGPRMSMTSILTRNMDKQRQKRL 360
Query: 348 EGDHQ 352
+ Q
Sbjct: 361 QEQKQ 365
>gi|54607116 leiomodin 3 (fetal) [Homo sapiens]
Length = 560
Score = 159 bits (403), Expect = 3e-39
Identities = 79/171 (46%), Positives = 115/171 (67%)
Query: 182 NPTNVEESLKRTKENDAHLVEVNLNNIKNIPIPTLKDFAKALETNTHVKCFSLAATRSND 241
N T+++ SL+R ++ND + E+NLNNI+NIP L DF A++ N H+K FSLA +++
Sbjct: 237 NQTDLDGSLRRVRKNDPDMKELNLNNIENIPKEMLLDFVNAMKKNKHIKTFSLANVGADE 296
Query: 242 PVATAFAEMLKVNKTLKSLNVESNFITGVGILALIDALRDNETLAELKIDNQRQQLGTAV 301
VA A A ML+ N+++ +LN+ESNFITG GI+A++ L+ NETL EL+ NQR LG
Sbjct: 297 NVAFALANMLRENRSITTLNIESNFITGKGIVAIMRCLQFNETLTELRFHNQRHMLGHHA 356
Query: 302 ELEMAKMLEENTNILKFGYQFTQQGPRTRAANAITKNNDLVRKRRVEGDHQ 352
E+E+A++L+ N +LK GY F GPR N +T+N D R++R E Q
Sbjct: 357 EMEIARLLKANNTLLKMGYHFELPGPRMVVTNLLTRNQDKQRQKRQEEQKQ 407
>gi|112380630 leiomodin 1 (smooth muscle) [Homo sapiens]
Length = 600
Score = 155 bits (391), Expect = 7e-38
Identities = 84/175 (48%), Positives = 111/175 (63%)
Query: 178 DEPPNPTNVEESLKRTKENDAHLVEVNLNNIKNIPIPTLKDFAKALETNTHVKCFSLAAT 237
+E P+ +E L+R K ND + EVN+NN I L F +ALE NT VK F+LA T
Sbjct: 310 EEEAAPSIFDEPLERVKNNDPEMTEVNVNNSDCITNEILVRFTEALEFNTVVKLFALANT 369
Query: 238 RSNDPVATAFAEMLKVNKTLKSLNVESNFITGVGILALIDALRDNETLAELKIDNQRQQL 297
R++D VA A A MLK NKT+ SLN++SN ITG GILA+ AL N TL EL+ NQR
Sbjct: 370 RADDHVAFAIAIMLKANKTITSLNLDSNHITGKGILAIFRALLQNNTLTELRFHNQRHIC 429
Query: 298 GTAVELEMAKMLEENTNILKFGYQFTQQGPRTRAANAITKNNDLVRKRRVEGDHQ 352
G E+E+AK+L+ENT +LK GY F GPR N +++N D R++R++ Q
Sbjct: 430 GGKTEMEIAKLLKENTTLLKLGYHFELAGPRMTVTNLLSRNMDKQRQKRLQEQRQ 484
Score = 62.8 bits (151), Expect = 5e-10
Identities = 32/72 (44%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
Query: 13 KDLDEDELLGNLSETELKQLETVLDDLDPENALLPAGFRQKNQTSKSTTGPFDREHLLSY 72
+D D D LL LS E+++LE LD +DP+ ++ P G RQ+NQT K +TG ++RE +L++
Sbjct: 13 EDPDIDSLLETLSPEEMEELEKELDVVDPDGSV-PVGLRQRNQTEKQSTGVYNREAMLNF 71
Query: 73 LEKEALEHKDRE 84
EKE + RE
Sbjct: 72 CEKETKKLMQRE 83
>gi|5174617 nucleotide-binding oligomerization domain containing 1
[Homo sapiens]
Length = 953
Score = 63.2 bits (152), Expect = 3e-10
Identities = 39/102 (38%), Positives = 56/102 (54%), Gaps = 6/102 (5%)
Query: 217 KDFAKALETNTHVKCFSLAATRSNDPVATAFAEMLKVNKTLKSLNVESNFITGVGILALI 276
K A+AL+ NT ++ L ND VA + AEMLKVN+TLK L + N IT G L
Sbjct: 858 KSLARALQQNTSLEILWLTQNELNDEVAESLAEMLKVNQTLKHLWLIQNQITAKGTAQLA 917
Query: 277 DALRDNETLAELKIDNQRQQLGTAVELEMAKMLEENTNILKF 318
DAL+ N + E+ ++ G ++ E AK+ E+ I+ F
Sbjct: 918 DALQSNTGITEICLN------GNLIKPEEAKVYEDEKRIICF 953
Score = 37.4 bits (85), Expect = 0.020
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 4/100 (4%)
Query: 217 KDFAKALETNTHVKCFSLAATRSNDPVATAFAEMLKVNKTLKSLNVESNFITGVGILALI 276
K FA+AL + + SLA+ + + A L+ N +L+ L + N + +L
Sbjct: 830 KAFAEALRNHPSLTTLSLASNGISTEGGKSLARALQQNTSLEILWLTQNELNDEVAESLA 889
Query: 277 DALRDNETLAEL-KIDNQRQQLGTAVELEMAKMLEENTNI 315
+ L+ N+TL L I NQ GTA ++A L+ NT I
Sbjct: 890 EMLKVNQTLKHLWLIQNQITAKGTA---QLADALQSNTGI 926
>gi|118918429 NOD3 protein [Homo sapiens]
Length = 1065
Score = 50.8 bits (120), Expect = 2e-06
Identities = 29/71 (40%), Positives = 43/71 (60%)
Query: 220 AKALETNTHVKCFSLAATRSNDPVATAFAEMLKVNKTLKSLNVESNFITGVGILALIDAL 279
A AL+ N +K ++ D A A AE LKVN+ L+SL+++SN I+ G+ AL+ AL
Sbjct: 771 ADALKQNRSLKELMFSSNSIGDGGAKALAEALKVNQGLESLDLQSNSISDAGVAALMGAL 830
Query: 280 RDNETLAELKI 290
N+TL L +
Sbjct: 831 CTNQTLLSLSL 841
Score = 49.7 bits (117), Expect = 4e-06
Identities = 36/127 (28%), Positives = 58/127 (45%), Gaps = 4/127 (3%)
Query: 217 KDFAKALETNTHVKCFSLAATRSNDPVATAFAEMLKVNKTLKSLNVESNFITGVGILALI 276
K A++L N + L A A A+ LK+N+TL SL+++ N + G ++
Sbjct: 684 KALARSLLVNRSLTSLDLRGNSIGPQGAKALADALKINRTLTSLSLQGNTVRDDGARSMA 743
Query: 277 DALRDNETLAELKIDNQRQQLGTAVELEMAKMLEENTNI--LKFGYQFTQQGPRTRAANA 334
+AL N TL+ L + Q+ +G MA L++N ++ L F G A A
Sbjct: 744 EALASNRTLSMLHL--QKNSIGPMGAQRMADALKQNRSLKELMFSSNSIGDGGAKALAEA 801
Query: 335 ITKNNDL 341
+ N L
Sbjct: 802 LKVNQGL 808
Score = 46.2 bits (108), Expect = 4e-05
Identities = 37/115 (32%), Positives = 54/115 (46%), Gaps = 4/115 (3%)
Query: 229 VKCFSLAATRSNDPVATAFAEMLKVNKTLKSLNVESNFITGVGILALIDALRDNETLAEL 288
++ SLA + ++ A A A L VN++L SL++ N I G AL DAL+ N TL L
Sbjct: 668 IQKISLAENQISNKGAKALARSLLVNRSLTSLDLRGNSIGPQGAKALADALKINRTLTSL 727
Query: 289 KIDNQRQQLGTAVELEMAKMLEENTNILKFGYQFTQQGP--RTRAANAITKNNDL 341
+ + A MA+ L N + Q GP R A+A+ +N L
Sbjct: 728 SLQGNTVRDDGA--RSMAEALASNRTLSMLHLQKNSIGPMGAQRMADALKQNRSL 780
Score = 44.3 bits (103), Expect = 2e-04
Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 2/107 (1%)
Query: 220 AKALETNTHVKCFSLAATRSNDPVATAFAEMLKVNKTLKSLNVESNFITGVGILALIDAL 279
A AL N+ +K L A +D A A A ++ N+TL SL+++ NFI AL AL
Sbjct: 855 AHALCANSTLKNLDLTANLLHDQGARAIAVAVRENRTLTSLHLQWNFIQAGAAQALGQAL 914
Query: 280 RDNETLAELKIDNQRQQLGTAVELEMAKMLEENTNILKFGYQFTQQG 326
+ N +L L D Q +G +A+ L+ NT + Q G
Sbjct: 915 QLNRSLTSL--DLQENAIGDDGACAVARALKVNTALTALYLQVASIG 959
Score = 42.7 bits (99), Expect = 5e-04
Identities = 34/116 (29%), Positives = 52/116 (44%), Gaps = 3/116 (2%)
Query: 201 VEVNLNNIKNIPIPTLKDFAKALETNTHVKCFSLAATRSNDPVATAFAEMLKVNKTLKSL 260
+++ N+I + + L AL TN + SL + A A A L N TLK+L
Sbjct: 811 LDLQSNSISDAGVAALMG---ALCTNQTLLSLSLRENSISPEGAQAIAHALCANSTLKNL 867
Query: 261 NVESNFITGVGILALIDALRDNETLAELKIDNQRQQLGTAVELEMAKMLEENTNIL 316
++ +N + G A+ A+R+N TL L + Q G A L A L + L
Sbjct: 868 DLTANLLHDQGARAIAVAVRENRTLTSLHLQWNFIQAGAAQALGQALQLNRSLTSL 923
Score = 40.8 bits (94), Expect = 0.002
Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 2/102 (1%)
Query: 220 AKALETNTHVKCFSLAATRSNDPVATAFAEMLKVNKTLKSLNVESNFITGVGILALIDAL 279
A+AL+ NT + L A E L VN+TL+ L++ N I G AL +AL
Sbjct: 939 ARALKVNTALTALYLQVASIGASGAQVLGEALAVNRTLEILDLRGNAIGVAGAKALANAL 998
Query: 280 RDNETLAELKIDNQRQQLGTAVELEMAKMLEENTNILKFGYQ 321
+ N +L L + Q LG + +A L N + Q
Sbjct: 999 KVNSSLRRLNL--QENSLGMDGAICIATALSGNHRLQHINLQ 1038
Score = 40.0 bits (92), Expect = 0.003
Identities = 33/125 (26%), Positives = 49/125 (39%)
Query: 217 KDFAKALETNTHVKCFSLAATRSNDPVATAFAEMLKVNKTLKSLNVESNFITGVGILALI 276
K A+AL+ N ++ L + +D A L N+TL SL++ N I+ G A+
Sbjct: 796 KALAEALKVNQGLESLDLQSNSISDAGVAALMGALCTNQTLLSLSLRENSISPEGAQAIA 855
Query: 277 DALRDNETLAELKIDNQRQQLGTAVELEMAKMLEENTNILKFGYQFTQQGPRTRAANAIT 336
AL N TL L + A + +A L + F Q G A+
Sbjct: 856 HALCANSTLKNLDLTANLLHDQGARAIAVAVRENRTLTSLHLQWNFIQAGAAQALGQALQ 915
Query: 337 KNNDL 341
N L
Sbjct: 916 LNRSL 920
Score = 37.0 bits (84), Expect = 0.027
Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 2/106 (1%)
Query: 221 KALETNTHVKCFSLAATRSNDPVATAFAEMLKVNKTLKSLNVESNFITGVGILALIDALR 280
+AL+ N + L D A A A LKVN L +L ++ I G L +AL
Sbjct: 912 QALQLNRSLTSLDLQENAIGDDGACAVARALKVNTALTALYLQVASIGASGAQVLGEALA 971
Query: 281 DNETLAELKIDNQRQQLGTAVELEMAKMLEENTNILKFGYQFTQQG 326
N TL L D + +G A +A L+ N+++ + Q G
Sbjct: 972 VNRTLEIL--DLRGNAIGVAGAKALANALKVNSSLRRLNLQENSLG 1015
>gi|229577123 t-complex-associated testis expressed 1 [Homo sapiens]
Length = 501
Score = 49.7 bits (117), Expect = 4e-06
Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 12/142 (8%)
Query: 198 AHLVEVNLNNIK-NIPIPTLKD-----FAKALETNTHVKCFSLAATRSNDPVATAFAEML 251
AH + N N I N+ + ++D A AL+TN + L ++P AT +++L
Sbjct: 355 AHALAHNTNLISLNLRLNCIEDEGGQALAHALQTNKCLTTLHLGGNELSEPTATLLSQVL 414
Query: 252 KVNKTLKSLNVESNFITGVGILALIDALRDNETLAE--LKIDNQRQQ----LGTAVELEM 305
+N TL S+N+ N I G L++ + DN+TL E L++ + Q+ +G A+
Sbjct: 415 AINTTLTSINLSCNHIGLDGGKQLLEGMSDNKTLLEFDLRLSDVAQESEYLIGQALYANR 474
Query: 306 AKMLEENTNILKFGYQFTQQGP 327
+ N F T GP
Sbjct: 475 EAARQRALNPSHFMSTITANGP 496
Score = 38.1 bits (87), Expect = 0.012
Identities = 34/151 (22%), Positives = 62/151 (41%), Gaps = 5/151 (3%)
Query: 203 VNLNNIKNIPIPTLKDFAKALETNTHVKCFSLAATRSNDPVATAFAEMLKVNKTLKSLNV 262
+NL N + P + A AL NT++ +L D A A L+ NK L +L++
Sbjct: 339 LNLAN-NQVRAPGAQSLAHALAHNTNLISLNLRLNCIEDEGGQALAHALQTNKCLTTLHL 397
Query: 263 ESNFITGVGILALIDALRDNETLAELKIDNQRQQLGTAVELEMAKMLEENTNILKFGYQF 322
N ++ L L N TL + + +G ++ + + +N +L+F +
Sbjct: 398 GGNELSEPTATLLSQVLAINTTLTSINL--SCNHIGLDGGKQLLEGMSDNKTLLEFDLRL 455
Query: 323 TQ--QGPRTRAANAITKNNDLVRKRRVEGDH 351
+ Q A+ N + R+R + H
Sbjct: 456 SDVAQESEYLIGQALYANREAARQRALNPSH 486
>gi|168986655 hypothetical protein LOC145497 [Homo sapiens]
Length = 488
Score = 41.6 bits (96), Expect = 0.001
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 221 KALETNTHVKCFSLAATRSNDPVATAFAEMLKVNKTLKSLNVESNFITGVGILALIDALR 280
+AL TN +K L+ + +D +ML +N L SL++ N G +AL + LR
Sbjct: 212 QALSTNYQIKKLDLSHNQFSDVGGEHLGQMLAINVGLTSLDLSWNNFHTRGAVALCNGLR 271
Query: 281 DNETLAELKIDNQRQQLGTAVELEMAKMLEEN 312
N TL K+D G V L + ++L N
Sbjct: 272 GNVTLT--KLDLSMNGFGNEVALALGEVLRLN 301
Score = 32.7 bits (73), Expect = 0.50
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 246 AFAEMLKVNKTLKSLNVESNFITGVGILALIDALRDNETLAELKIDN 292
A A L N + L +E N I G+L+L++ L++N L E+ I N
Sbjct: 124 AIAIALVSNMAVTKLELEDNCIMEEGVLSLVEMLQENYYLQEMNISN 170
Score = 32.3 bits (72), Expect = 0.66
Identities = 20/68 (29%), Positives = 32/68 (47%)
Query: 223 LETNTHVKCFSLAATRSNDPVATAFAEMLKVNKTLKSLNVESNFITGVGILALIDALRDN 282
L N + L+ + VA A E+L++N+ L L++ N I G + L N
Sbjct: 270 LRGNVTLTKLDLSMNGFGNEVALALGEVLRLNRCLVYLDIGGNDIGNEGASKISKGLESN 329
Query: 283 ETLAELKI 290
E+L LK+
Sbjct: 330 ESLRVLKL 337
>gi|11545912 nucleotide-binding oligomerization domain containing 2
[Homo sapiens]
Length = 1040
Score = 38.9 bits (89), Expect = 0.007
Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
Query: 220 AKALETNTHVKCFSLAATRSNDPVATAFAEMLKVNKTLKSLNVESNFITGVGILALIDAL 279
A+AL + ++ SL A A A ML N L+ L +E N + G+ +L + L
Sbjct: 920 AEALGDHQSLRWLSLVGNNIGSVGAQALALMLAKNVMLEELCLEENHLQDEGVCSLAEGL 979
Query: 280 RDNETLAELKIDNQ-RQQLGTAVELEMAKMLEENTNILK 317
+ N +L LK+ N LG L+ LE N IL+
Sbjct: 980 KKNSSLKILKLSNNCITYLGAEALLQ---ALERNDTILE 1015
>gi|66392157 RGD motif, leucine rich repeats, tropomodulin domain
and proline-rich containing [Homo sapiens]
Length = 1435
Score = 37.7 bits (86), Expect = 0.016
Identities = 19/70 (27%), Positives = 36/70 (51%)
Query: 221 KALETNTHVKCFSLAATRSNDPVATAFAEMLKVNKTLKSLNVESNFITGVGILALIDALR 280
+AL TN ++ ++ D A A+ L+VN L+S+ + N + +G+L + AL
Sbjct: 603 RALATNPNLTALDISGNAMGDAGAKLLAKALRVNSRLRSVVWDRNHTSALGLLDVAQALE 662
Query: 281 DNETLAELKI 290
N +L + +
Sbjct: 663 QNHSLKAMPL 672
>gi|194018482 NLR family, pyrin domain containing 4 [Homo sapiens]
Length = 994
Score = 33.5 bits (75), Expect = 0.29
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 10/110 (9%)
Query: 200 LVEVNLNNIKNIPIPTLKDFAKAL-ETNTHVKCFSLAATRSNDPVATAFAEMLKVNKTLK 258
++++ N I ++ + L +AL T+ ++ L A +L +KTL+
Sbjct: 868 ILQIGCNEIGDVGVQLL---CRALTHTDCRLEILGLEECGLTSTCCKDLASVLTCSKTLQ 924
Query: 259 SLNVESNFITGVGILALIDALRDNET------LAELKIDNQRQQLGTAVE 302
LN+ N + G++ L +ALR E L + D + Q L TA E
Sbjct: 925 QLNLTLNTLDHTGVVVLCEALRHPECALQVLGLRKTDFDEETQALLTAEE 974
>gi|33667040 NLR family, pyrin domain containing 8 [Homo sapiens]
Length = 1048
Score = 32.7 bits (73), Expect = 0.50
Identities = 23/64 (35%), Positives = 41/64 (64%), Gaps = 5/64 (7%)
Query: 254 NKTLKSLNVESNFITGVGILALIDALRDNE-TLAELKIDNQRQQLGTAVELE-MAKMLEE 311
NKTLKSL++ N + G++ L +AL++ + TL L+++N L T++ + MA ML +
Sbjct: 923 NKTLKSLDLSFNSLKDDGVILLCEALKNPDCTLQILELEN---CLFTSICCQAMASMLRK 979
Query: 312 NTNI 315
N ++
Sbjct: 980 NQHL 983
>gi|38569471 MUF1 protein [Homo sapiens]
Length = 812
Score = 32.7 bits (73), Expect = 0.50
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 251 LKVNKTLKSLNVESNFITGVGILALIDALRDNETLAELKIDNQRQQLGTAVELEMAKMLE 310
+K N TLK L + N + G+LAL D ++ + + ++D + LE AK LE
Sbjct: 698 MKGNSTLKGLRLPGNRLGNAGLLALADVFSEDSSSSLCQLDISSNCIKPDGLLEFAKRLE 757
>gi|7705558 inositol-3-phosphate synthase 1 [Homo sapiens]
Length = 558
Score = 32.3 bits (72), Expect = 0.66
Identities = 24/90 (26%), Positives = 37/90 (41%)
Query: 5 FRKDLEKYKDLDEDELLGNLSETELKQLETVLDDLDPENALLPAGFRQKNQTSKSTTGPF 64
F+ K K + D L+G+ +T L + D EN P FR K + +
Sbjct: 304 FKSGQTKVKSVLVDFLIGSGLKTMSIVSYNHLGNNDGENLSAPLQFRSKEVSKSNVVDDM 363
Query: 65 DREHLLSYLEKEALEHKDREDYVPYTGEKK 94
+ + + Y E +H YVPY G+ K
Sbjct: 364 VQSNPVLYTPGEEPDHCVVIKYVPYVGDSK 393
>gi|163965441 hypothetical protein LOC149499 [Homo sapiens]
Length = 559
Score = 32.3 bits (72), Expect = 0.66
Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 14/134 (10%)
Query: 207 NIKNIPIPTLKDFAKALETNTHVKCFSLAATRSNDPVATAFAEMLKV----NKTLKSLNV 262
+++ P+P + + K + ++ + SL +D A + L N+TL SLN+
Sbjct: 201 SLEGNPLPE-QSYHKLMALDSTIAHLSLRNNNIDDRGAQLLGQALSTLHSCNRTLVSLNL 259
Query: 263 ESNFITGVGILALIDALRDNETLAELKIDNQRQQ---------LGTAVELEMAKMLEENT 313
N I G + D LR N +L L + + R Q + A EL +++E
Sbjct: 260 GFNHIGDEGAGYIADGLRLNRSLLWLSLAHNRIQDKGALKLAEVLRAFELTHTEVVERRR 319
Query: 314 NILKFGYQFTQQGP 327
+L+ G Q + P
Sbjct: 320 LLLEKGTQERSRSP 333
>gi|46255064 synaptotagmin-like 2 isoform d [Homo sapiens]
Length = 1256
Score = 30.8 bits (68), Expect = 1.9
Identities = 50/195 (25%), Positives = 74/195 (37%), Gaps = 27/195 (13%)
Query: 13 KDLDEDELLGNLSETELKQLETVLDDLDPENALLPAGFRQKNQTSKSTTGPFDREHLLSY 72
KD D L LSET ++ + + L P+ +N+T T D E +
Sbjct: 162 KDTFNDSLQKLLSETSTPAIQPSGGKVHGKQVLEPSV--SENRTWPQKTDFADTEEEVKG 219
Query: 73 LEKEALEHKDREDYVPYTGEKKGKIFIPKQKPVQTFTEEKVSLDPELEEALTSASDTELC 132
EK EH D+ + PK K + SL L++ L A+ T
Sbjct: 220 PEKIINEHVDKT------------VVHPKVK--------RNSLTASLDKLLKEATGTSPS 259
Query: 133 DLAAILGMHNLITNTKFCNIMGSSNGVDQEHFSNVVKGEKI--LPVFDEPPNPTNVEESL 190
L A L TN+K G++Q H ++ K E + PV DE T + L
Sbjct: 260 PLQAKLAPVITGTNSKLEEGRFFGKGIEQSHNTSADKREILAPFPVRDETFGNTAL---L 316
Query: 191 KRTKENDAHLVEVNL 205
K+ + + L NL
Sbjct: 317 KKAESGECQLSTQNL 331
>gi|46255062 synaptotagmin-like 2 isoform c [Homo sapiens]
Length = 1272
Score = 30.8 bits (68), Expect = 1.9
Identities = 50/195 (25%), Positives = 74/195 (37%), Gaps = 27/195 (13%)
Query: 13 KDLDEDELLGNLSETELKQLETVLDDLDPENALLPAGFRQKNQTSKSTTGPFDREHLLSY 72
KD D L LSET ++ + + L P+ +N+T T D E +
Sbjct: 162 KDTFNDSLQKLLSETSTPAIQPSGGKVHGKQVLEPSV--SENRTWPQKTDFADTEEEVKG 219
Query: 73 LEKEALEHKDREDYVPYTGEKKGKIFIPKQKPVQTFTEEKVSLDPELEEALTSASDTELC 132
EK EH D+ + PK K + SL L++ L A+ T
Sbjct: 220 PEKIINEHVDKT------------VVHPKVK--------RNSLTASLDKLLKEATGTSPS 259
Query: 133 DLAAILGMHNLITNTKFCNIMGSSNGVDQEHFSNVVKGEKI--LPVFDEPPNPTNVEESL 190
L A L TN+K G++Q H ++ K E + PV DE T + L
Sbjct: 260 PLQAKLAPVITGTNSKLEEGRFFGKGIEQSHNTSADKREILAPFPVRDETFGNTAL---L 316
Query: 191 KRTKENDAHLVEVNL 205
K+ + + L NL
Sbjct: 317 KKAESGECQLSTQNL 331
>gi|5453726 leucine rich repeat (in FLII) interacting protein 2
isoform 1 [Homo sapiens]
Length = 721
Score = 30.8 bits (68), Expect = 1.9
Identities = 32/156 (20%), Positives = 67/156 (42%), Gaps = 28/156 (17%)
Query: 1 MALPFRKDLEKYKDLDEDELLGNLSETELKQLETVLDDLDPENALLPAGFRQKNQTSKST 60
MA +R++ EK K+L+ + + ++ + ++++L+ + L + L+ R + + T
Sbjct: 414 MAEFYRENEEKSKELERQKHMCSVLQHKMEELK---EGLRQRDELIEEKQRMQQKIDTMT 470
Query: 61 TGPFDREHLLSYLEKEALEHKDREDYVPY--------------------TGEKKGKIFIP 100
FD + L + +K+ + +++Y+ TGEK G + IP
Sbjct: 471 KEVFDLQETLLWKDKKIGALEKQKEYIACLRNERDMLREELADLQETVKTGEKHGLVIIP 530
Query: 101 KQKPVQTFTEEKVS-----LDPELEEALTSASDTEL 131
P + E V+ + E + L SA + L
Sbjct: 531 DGTPNGDVSHEPVAGAITVVSQEAAQVLESAGEGPL 566
>gi|10190742 ubiquitin specific peptidase 29 [Homo sapiens]
Length = 922
Score = 30.8 bits (68), Expect = 1.9
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 11/83 (13%)
Query: 154 GSSNGVDQEHFSNVVKGEKILPVFDEPPN------PTNVEESLKRTKENDAHLVEVNLNN 207
GS+ + HF + GEK LPV D + P E+ K D LVEV+L
Sbjct: 625 GSALESELVHFRDRAIGEKELPVADSLMDQGDISLPVMYEDGGKLISSPDTRLVEVHLQE 684
Query: 208 IKNIPIPTLKDFAKALETNTHVK 230
+ P + K +TNT V+
Sbjct: 685 VPQHP-----ELQKYEKTNTFVE 702
>gi|21955154 NLR family, pyrin domain containing 12 isoform 2 [Homo
sapiens]
Length = 1061
Score = 30.8 bits (68), Expect = 1.9
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 248 AEMLKVNKTLKSLNVESNFITGVGILALIDALRDNE-TLAELKIDNQRQQLGTAVELEMA 306
A L VN++L+ L++ N + +G+L L + LR L L++ R LG+A ++
Sbjct: 877 ASTLSVNQSLRELDLSLNELGDLGVLLLCEGLRHPTCKLQTLRLGICR--LGSAACEGLS 934
Query: 307 KMLEENTNILKFGYQFTQQG 326
+L+ N N+ + F G
Sbjct: 935 VVLQANHNLRELDLSFNDLG 954
>gi|4507531 toll-like receptor 3 [Homo sapiens]
Length = 904
Score = 30.4 bits (67), Expect = 2.5
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 11/72 (15%)
Query: 199 HLVEVNLNNIKNIPIPTLKDFAKALETNTHVKCFSLAATRSNDPVATAFAEMLKVNKTLK 258
H++ + N IP+ KD + +K L N A+ F + +LK
Sbjct: 565 HILNLESNGFDEIPVEVFKDLFE-------LKIIDLGLNNLNTLPASVFNNQV----SLK 613
Query: 259 SLNVESNFITGV 270
SLN++ N IT V
Sbjct: 614 SLNLQKNLITSV 625
>gi|158321897 NACHT, LRR and PYD containing protein 5 [Homo sapiens]
Length = 1200
Score = 30.4 bits (67), Expect = 2.5
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 217 KDFAKALETNTHVKCF----SLAATRSNDPVATAFAEMLKVNKTLKSLNVESNFITGVGI 272
+D A E H KC L +++L + +LKSL++ N +T G+
Sbjct: 852 EDVRMACEALKHPKCLLESLRLDCCGLTHACYLKISQILTTSPSLKSLSLAGNKVTDQGV 911
Query: 273 LALIDALR 280
+ L DALR
Sbjct: 912 MPLSDALR 919
>gi|215982794 myosin VA isoform 2 [Homo sapiens]
Length = 1828
Score = 30.4 bits (67), Expect = 2.5
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 7/111 (6%)
Query: 14 DLDEDELLGNLSETELKQLETVLDDLDPENALLPAGFRQKNQTSKSTTGPFDREHLLSYL 73
DL+++ L E +LE DDL E L+ + ++ + ST + E++ S
Sbjct: 1070 DLNDERLRYQNLLNEFSRLEERYDDLKEEMTLMVHVPKPGHKRTDSTHSSNESEYIFS-- 1127
Query: 74 EKEALEHKDREDYVPYTGEKK----GKIFIPKQKPVQTFTEEKVSLDPELE 120
E E +D EKK +F+ QK V +EK + EL+
Sbjct: 1128 -SEIAEMEDIPSRTEEPSEKKVPLDMSLFLKLQKRVTELEQEKQVMQDELD 1177
>gi|215982791 myosin VA isoform 1 [Homo sapiens]
Length = 1855
Score = 30.4 bits (67), Expect = 2.5
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 7/111 (6%)
Query: 14 DLDEDELLGNLSETELKQLETVLDDLDPENALLPAGFRQKNQTSKSTTGPFDREHLLSYL 73
DL+++ L E +LE DDL E L+ + ++ + ST + E++ S
Sbjct: 1070 DLNDERLRYQNLLNEFSRLEERYDDLKEEMTLMVHVPKPGHKRTDSTHSSNESEYIFS-- 1127
Query: 74 EKEALEHKDREDYVPYTGEKK----GKIFIPKQKPVQTFTEEKVSLDPELE 120
E E +D EKK +F+ QK V +EK + EL+
Sbjct: 1128 -SEIAEMEDIPSRTEEPSEKKVPLDMSLFLKLQKRVTELEQEKQVMQDELD 1177
>gi|210147567 hypothetical protein LOC220081 [Homo sapiens]
Length = 696
Score = 30.4 bits (67), Expect = 2.5
Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 22/139 (15%)
Query: 2 ALPFRKDLEKYKDLDEDELLGNLSETELKQLETV--LDDLDPENALLPAGFRQKNQTSK- 58
+L ++ LE+ +DL+E+E LG E LK+ E + + L+ E L AG+ ++ + +
Sbjct: 55 SLEDKEYLEEEEDLEEEEYLG--KEEYLKEEEYLGKEEHLEEEEYLEKAGYLEEEEYIEE 112
Query: 59 ----STTGPFDREHLL---------SYLEKEA-LEHKDREDYVPYTGEKKGKIFIPKQKP 104
G + E L YL KE LE +D + V Y G KK + +
Sbjct: 113 EEYLGKEGYLEEEEYLGKEEHLEEEEYLGKEGYLEKEDYIEEVDYLG-KKAYLEEEEYLG 171
Query: 105 VQTFTEEKVSLDPE--LEE 121
+++ EE+ +L+ E LEE
Sbjct: 172 KKSYLEEEKALEKEENLEE 190
>gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin (with
transmembrane signal), 1 [Homo sapiens]
Length = 3259
Score = 30.4 bits (67), Expect = 2.5
Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 4/122 (3%)
Query: 9 LEKYKDLDEDELLGNLSETELKQLETVLDDLDPENALLPAGFRQKNQTSKSTTGPFDREH 68
LEK + + E N + E++ L + +DDL+ ENA L A Q + D +
Sbjct: 2492 LEKDQLIQEAAAENNKLKEEIRGLRSHMDDLNSENAKLDAELIQYREDLNQVITIKDSQQ 2551
Query: 69 LLSYLEKEALEHKDREDYVPYTGEKKGKIFIPKQKPVQTFT---EEKVSLDPELEEALTS 125
LE + ++K+ E+ EK + + ++F EEK L E+E S
Sbjct: 2552 -KQLLEVQLQQNKELENKYAKLEEKLKESEEANEDLRRSFNALQEEKQDLSKEIESLKVS 2610
Query: 126 AS 127
S
Sbjct: 2611 IS 2612
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.131 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,446,620
Number of Sequences: 37866
Number of extensions: 542694
Number of successful extensions: 1565
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 1491
Number of HSP's gapped (non-prelim): 101
length of query: 352
length of database: 18,247,518
effective HSP length: 103
effective length of query: 249
effective length of database: 14,347,320
effective search space: 3572482680
effective search space used: 3572482680
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.