Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: NLRP5 Sequence: fasta or formatted (1200aa) NCBI GI: 158321897
Description:

NACHT, LRR and PYD containing protein 5

Referenced in:

Pyrin and Associated Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         80           3
 C cysteine            4.0         48           2
 D aspartate           4.4         53           2
 E glutamate           7.4         89           3
 F phenylalanine       3.5         42           2
 G glycine             5.9         71           2
 H histidine           2.8         33           1
 I isoleucine          3.6         43           2
 K lysine              5.1         61           3
 L leucine            14.2        171           3
 M methionine          2.7         32           2
 N asparagine          3.4         41           2
 P proline             4.2         50           2
 Q glutamine           5.0         60           2
 R arginine            5.3         64           2
 S serine              7.8         93           2
 T threonine           5.0         60           2
 V valine              5.9         71           2
 W tryptophan          1.8         21           2
 Y tyrosine            1.4         17           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   NACHT, LRR and PYD containing protein 5 
NLRP14                0.284   NLR family, pyrin domain containing 14 
NLRP12                0.195   NLR family, pyrin domain containing 12 isoform 2 [Ho...
NLRP13                0.193   NACHT, leucine rich repeat and PYD containing 13 [H...
NLRP4                 0.185   NLR family, pyrin domain containing 4 
NLRP3                 0.182   NLR family, pyrin domain containing 3 isoform a [Ho...
NLRP3                 0.182   NLR family, pyrin domain containing 3 isoform a [Hom...
NLRP2                 0.177   NLR family, pyrin domain containing 2 
NLRP9                 0.174   NLR family, pyrin domain containing 9 
NLRP7                 0.165   NACHT, leucine rich repeat and PYD containing 7 iso...
NLRP8                 0.163   NLR family, pyrin domain containing 8 
NLRP3                 0.162   NLR family, pyrin domain containing 3 isoform c [Ho...
NLRP3                 0.160   NLR family, pyrin domain containing 3 isoform d [Ho...
NLRP7                 0.155   NACHT, leucine rich repeat and PYD containing 7 isof...
NLRP7                 0.154   NACHT, leucine rich repeat and PYD containing 7 isof...
NLRP11                0.143   NLR family, pyrin domain containing 11 
NLRP3                 0.140   NLR family, pyrin domain containing 3 isoform b [Hom...
NLRP1                 0.123   NLR family, pyrin domain containing 1 isoform 2 [Homo...
NLRP1                 0.123   NLR family, pyrin domain containing 1 isoform 5 [Hom...
NLRP1                 0.123   NLR family, pyrin domain containing 1 isoform 1 [Hom...
NLRP1                 0.123   NLR family, pyrin domain containing 1 isoform 4 [Hom...
NLRP1                 0.123   NLR family, pyrin domain containing 1 isoform 3 [Hom...
NLRP6                 0.089   NLR family, pyrin domain containing 6 
RNH1                  0.088   ribonuclease/angiogenin inhibitor 
RNH1                  0.088   ribonuclease/angiogenin inhibitor 
RNH1                  0.088   ribonuclease/angiogenin inhibitor 
RNH1                  0.088   ribonuclease/angiogenin inhibitor 
RNH1                  0.088   ribonuclease/angiogenin inhibitor 
RNH1                  0.088   ribonuclease/angiogenin inhibitor 
RNH1                  0.088   ribonuclease/angiogenin inhibitor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press