Guide to the Human Genome
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Name: C14orf166B Sequence: fasta or formatted (488aa) NCBI GI: 168986655
Description:

hypothetical protein LOC145497

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9         24           2
 C cysteine            1.4          7           1
 D aspartate           4.7         23           2
 E glutamate           8.2         40           2
 F phenylalanine       3.9         19           2
 G glycine             6.6         32           2
 H histidine           1.8          9           2
 I isoleucine          5.9         29           2
 K lysine              6.6         32           2
 L leucine            12.3         60           2
 M methionine          4.1         20           1
 N asparagine          7.2         35           2
 P proline             4.1         20           2
 Q glutamine           3.7         18           1
 R arginine            3.3         16           1
 S serine              7.4         36           3
 T threonine           4.3         21           2
 V valine              6.8         33           2
 W tryptophan          0.6          3           1
 Y tyrosine            2.3         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC145497 
NLRC3                 0.113   NOD3 protein 
LRRC45                0.070   leucine rich repeat containing 45 
LRRC34                0.069   leucine rich repeat containing 34 
NLRC5                 0.064   nucleotide-binding oligomerization domains 27 [Homo...
TCTE1                 0.060   t-complex-associated testis expressed 1 
NOD1                  0.059   nucleotide-binding oligomerization domain containing ...
NOD2                  0.057   nucleotide-binding oligomerization domain containing...
NLRP5                 0.051   NACHT, LRR and PYD containing protein 5 
NLRP12                0.050   NLR family, pyrin domain containing 12 isoform 2 [Ho...
LRRC68                0.048   PREDICTED: leucine rich repeat containing 68 
LRRC68                0.048   PREDICTED: leucine rich repeat containing 68 
LRRC68                0.048   PREDICTED: leucine rich repeat containing 68 
NLRP14                0.048   NLR family, pyrin domain containing 14 
NLRP13                0.046   NACHT, leucine rich repeat and PYD containing 13 [H...
RANGAP1               0.043   Ran GTPase activating protein 1 
NLRP3                 0.042   NLR family, pyrin domain containing 3 isoform a [Ho...
NLRP3                 0.042   NLR family, pyrin domain containing 3 isoform a [Hom...
NLRP3                 0.041   NLR family, pyrin domain containing 3 isoform c [Ho...
RNH1                  0.041   ribonuclease/angiogenin inhibitor 
RNH1                  0.041   ribonuclease/angiogenin inhibitor 
RNH1                  0.041   ribonuclease/angiogenin inhibitor 
RNH1                  0.041   ribonuclease/angiogenin inhibitor 
RNH1                  0.041   ribonuclease/angiogenin inhibitor 
RNH1                  0.041   ribonuclease/angiogenin inhibitor 
RNH1                  0.041   ribonuclease/angiogenin inhibitor 
RNH1                  0.041   ribonuclease/angiogenin inhibitor 
LRRC16A               0.040   leucine rich repeat containing 16A 
NLRP2                 0.037   NLR family, pyrin domain containing 2 
NLRP11                0.035   NLR family, pyrin domain containing 11 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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