Guide to the Human Genome
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Name: NLRP12 Sequence: fasta or formatted (1061aa) NCBI GI: 21955154
Description:

NLR family, pyrin domain containing 12 isoform 2

Referenced in:

Pyrin and Associated Functions
RNases and RNA Stability

Other entries for this name:
alt prot [287aa] NLR family, pyrin domain containing 12 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         65           3
 C cysteine            4.0         42           1
 D aspartate           4.2         45           1
 E glutamate           7.4         78           3
 F phenylalanine       3.6         38           2
 G glycine             6.8         72           3
 H histidine           2.7         29           1
 I isoleucine          3.1         33           2
 K lysine              4.1         43           2
 L leucine            16.9        179           3
 M methionine          2.4         25           2
 N asparagine          3.6         38           2
 P proline             4.3         46           3
 Q glutamine           5.1         54           3
 R arginine            7.0         74           2
 S serine              6.0         64           3
 T threonine           4.8         51           3
 V valine              4.1         43           2
 W tryptophan          1.5         16           1
 Y tyrosine            2.5         26           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   NLR family, pyrin domain containing 12 isoform 2 [Ho... 
NLRP3                 0.416   NLR family, pyrin domain containing 3 isoform a [Ho...
NLRP3                 0.416   NLR family, pyrin domain containing 3 isoform a [Hom...
NLRP3                 0.393   NLR family, pyrin domain containing 3 isoform c [Ho...
NLRP3                 0.389   NLR family, pyrin domain containing 3 isoform d [Ho...
NLRP3                 0.367   NLR family, pyrin domain containing 3 isoform b [Hom...
NLRP14                0.302   NLR family, pyrin domain containing 14 
NLRP9                 0.248   NLR family, pyrin domain containing 9 
NLRP13                0.231   NACHT, leucine rich repeat and PYD containing 13 [H...
NLRP4                 0.226   NLR family, pyrin domain containing 4 
NLRP5                 0.219   NACHT, LRR and PYD containing protein 5 
NLRP1                 0.218   NLR family, pyrin domain containing 1 isoform 2 [Homo...
NLRP1                 0.218   NLR family, pyrin domain containing 1 isoform 5 [Hom...
NLRP1                 0.218   NLR family, pyrin domain containing 1 isoform 1 [Hom...
NLRP2                 0.216   NLR family, pyrin domain containing 2 
NLRP1                 0.216   NLR family, pyrin domain containing 1 isoform 4 [Hom...
NLRP1                 0.216   NLR family, pyrin domain containing 1 isoform 3 [Hom...
NLRP8                 0.205   NLR family, pyrin domain containing 8 
NLRP7                 0.196   NACHT, leucine rich repeat and PYD containing 7 iso...
NLRP7                 0.195   NACHT, leucine rich repeat and PYD containing 7 isof...
NLRP6                 0.189   NLR family, pyrin domain containing 6 
NLRP7                 0.185   NACHT, leucine rich repeat and PYD containing 7 isof...
NLRP12                0.178   NLR family, pyrin domain containing 12 isoform 1 [Ho...
NLRP11                0.171   NLR family, pyrin domain containing 11 
NLRP10                0.150   NLR family, pyrin domain containing 10 
RNH1                  0.121   ribonuclease/angiogenin inhibitor 
RNH1                  0.121   ribonuclease/angiogenin inhibitor 
RNH1                  0.121   ribonuclease/angiogenin inhibitor 
RNH1                  0.121   ribonuclease/angiogenin inhibitor 
RNH1                  0.121   ribonuclease/angiogenin inhibitor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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