Guide to the Human Genome
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Name: NLRP8 Sequence: fasta or formatted (1048aa) NCBI GI: 33667040
Description:

NLR family, pyrin domain containing 8

Referenced in:

Pyrin and Associated Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0         52           3
 C cysteine            4.2         44           2
 D aspartate           3.5         37           2
 E glutamate           6.3         66           2
 F phenylalanine       4.8         50           2
 G glycine             4.5         47           1
 H histidine           3.1         32           1
 I isoleucine          4.4         46           1
 K lysine              5.6         59           2
 L leucine            13.5        142           5
 M methionine          2.6         27           1
 N asparagine          4.8         50           2
 P proline             5.0         52           2
 Q glutamine           5.0         52           2
 R arginine            5.2         54           2
 S serine              7.8         82           4
 T threonine           5.3         56           2
 V valine              5.7         60           3
 W tryptophan          1.9         20           2
 Y tyrosine            1.9         20           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   NLR family, pyrin domain containing 8 
NLRP14                0.280   NLR family, pyrin domain containing 14 
NLRP9                 0.223   NLR family, pyrin domain containing 9 
NLRP4                 0.212   NLR family, pyrin domain containing 4 
NLRP13                0.207   NACHT, leucine rich repeat and PYD containing 13 [H...
NLRP12                0.206   NLR family, pyrin domain containing 12 isoform 2 [Ho...
NLRP7                 0.204   NACHT, leucine rich repeat and PYD containing 7 iso...
NLRP7                 0.195   NACHT, leucine rich repeat and PYD containing 7 isof...
NLRP7                 0.193   NACHT, leucine rich repeat and PYD containing 7 isof...
NLRP3                 0.193   NLR family, pyrin domain containing 3 isoform a [Ho...
NLRP3                 0.193   NLR family, pyrin domain containing 3 isoform a [Hom...
NLRP2                 0.189   NLR family, pyrin domain containing 2 
NLRP5                 0.184   NACHT, LRR and PYD containing protein 5 
NLRP3                 0.176   NLR family, pyrin domain containing 3 isoform c [Ho...
NLRP3                 0.175   NLR family, pyrin domain containing 3 isoform d [Ho...
NLRP3                 0.158   NLR family, pyrin domain containing 3 isoform b [Hom...
NLRP11                0.152   NLR family, pyrin domain containing 11 
NLRP1                 0.120   NLR family, pyrin domain containing 1 isoform 2 [Homo...
NLRP1                 0.120   NLR family, pyrin domain containing 1 isoform 5 [Hom...
NLRP1                 0.120   NLR family, pyrin domain containing 1 isoform 1 [Hom...
NLRP1                 0.120   NLR family, pyrin domain containing 1 isoform 4 [Hom...
NLRP1                 0.120   NLR family, pyrin domain containing 1 isoform 3 [Hom...
NLRP6                 0.088   NLR family, pyrin domain containing 6 
NLRP10                0.073   NLR family, pyrin domain containing 10 
RNH1                  0.064   ribonuclease/angiogenin inhibitor 
RNH1                  0.064   ribonuclease/angiogenin inhibitor 
RNH1                  0.064   ribonuclease/angiogenin inhibitor 
RNH1                  0.064   ribonuclease/angiogenin inhibitor 
RNH1                  0.064   ribonuclease/angiogenin inhibitor 
RNH1                  0.064   ribonuclease/angiogenin inhibitor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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