Guide to the Human Genome
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Name: NLRP4 Sequence: fasta or formatted (994aa) NCBI GI: 194018482
Description:

NLR family, pyrin domain containing 4

Referenced in:

Pyrin and Associated Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         54           2
 C cysteine            5.2         52           2
 D aspartate           5.2         52           2
 E glutamate           7.8         78           3
 F phenylalanine       4.9         49           2
 G glycine             3.8         38           2
 H histidine           2.4         24           2
 I isoleucine          4.4         44           2
 K lysine              6.2         62           2
 L leucine            15.0        149           2
 M methionine          1.7         17           2
 N asparagine          3.4         34           2
 P proline             3.5         35           2
 Q glutamine           5.4         54           2
 R arginine            4.3         43           2
 S serine              6.5         65           2
 T threonine           5.5         55           2
 V valine              5.4         54           3
 W tryptophan          1.1         11           1
 Y tyrosine            2.4         24           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   NLR family, pyrin domain containing 4 
NLRP9                 0.384   NLR family, pyrin domain containing 9 
NLRP14                0.358   NLR family, pyrin domain containing 14 
NLRP11                0.281   NLR family, pyrin domain containing 11 
NLRP3                 0.258   NLR family, pyrin domain containing 3 isoform a [Ho...
NLRP3                 0.258   NLR family, pyrin domain containing 3 isoform a [Hom...
NLRP12                0.257   NLR family, pyrin domain containing 12 isoform 2 [Ho...
NLRP13                0.250   NACHT, leucine rich repeat and PYD containing 13 [H...
NLRP2                 0.238   NLR family, pyrin domain containing 2 
NLRP5                 0.231   NACHT, LRR and PYD containing protein 5 
NLRP8                 0.226   NLR family, pyrin domain containing 8 
NLRP7                 0.225   NACHT, leucine rich repeat and PYD containing 7 iso...
NLRP7                 0.221   NACHT, leucine rich repeat and PYD containing 7 isof...
NLRP3                 0.219   NLR family, pyrin domain containing 3 isoform c [Ho...
NLRP3                 0.213   NLR family, pyrin domain containing 3 isoform d [Ho...
NLRP7                 0.211   NACHT, leucine rich repeat and PYD containing 7 isof...
NLRP3                 0.204   NLR family, pyrin domain containing 3 isoform b [Hom...
NLRP1                 0.148   NLR family, pyrin domain containing 1 isoform 2 [Homo...
NLRP1                 0.148   NLR family, pyrin domain containing 1 isoform 5 [Hom...
NLRP1                 0.148   NLR family, pyrin domain containing 1 isoform 1 [Hom...
NLRP1                 0.147   NLR family, pyrin domain containing 1 isoform 4 [Hom...
NLRP1                 0.147   NLR family, pyrin domain containing 1 isoform 3 [Hom...
NLRP6                 0.138   NLR family, pyrin domain containing 6 
NLRP10                0.101   NLR family, pyrin domain containing 10 
NLRP12                0.082   NLR family, pyrin domain containing 12 isoform 1 [Ho...
RNH1                  0.080   ribonuclease/angiogenin inhibitor 
RNH1                  0.080   ribonuclease/angiogenin inhibitor 
RNH1                  0.080   ribonuclease/angiogenin inhibitor 
RNH1                  0.080   ribonuclease/angiogenin inhibitor 
RNH1                  0.080   ribonuclease/angiogenin inhibitor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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