Guide to the Human Genome
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Name: TMOD2 Sequence: fasta or formatted (315aa) NCBI GI: 218931148
Description:

neuronal tropomodulin isoform b

Referenced in:

Cytoskeleton
Neurons

Other entries for this name:
alt prot [351aa] neuronal tropomodulin isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         23           3
 C cysteine            0.0          0           0
 D aspartate           6.0         19           2
 E glutamate          12.4         39           3
 F phenylalanine       3.8         12           1
 G glycine             4.8         15           2
 H histidine           0.6          2           1
 I isoleucine          4.1         13           1
 K lysine             10.2         32           2
 L leucine            11.4         36           2
 M methionine          2.2          7           1
 N asparagine          7.0         22           2
 P proline             5.1         16           2
 Q glutamine           4.8         15           2
 R arginine            4.4         14           2
 S serine              2.9          9           1
 T threonine           5.7         18           1
 V valine              6.0         19           2
 W tryptophan          0.0          0           0
 Y tyrosine            1.3          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   neuronal tropomodulin isoform b 
TMOD2                 0.970   neuronal tropomodulin isoform a 
TMOD3                 0.726   tropomodulin 3 (ubiquitous) 
TMOD1                 0.541   tropomodulin 1 
TMOD4                 0.501   tropomodulin 4 (muscle) 
LMOD2                 0.291   leiomodin 2 (cardiac) 
LMOD3                 0.215   leiomodin 3 (fetal) 
LMOD1                 0.161   leiomodin 1 (smooth muscle) 
NLRC3                 0.044   NOD3 protein 
NOD1                  0.037   nucleotide-binding oligomerization domain containing ...
C14orf166B            0.030   hypothetical protein LOC145497 
NOD2                  0.022   nucleotide-binding oligomerization domain containing...
MYH7                  0.022   myosin, heavy chain 7, cardiac muscle, beta 
HTATSF1               0.020   HIV-1 Tat specific factor 1 
HTATSF1               0.020   HIV-1 Tat specific factor 1 
HYDIN                 0.019   hydrocephalus inducing isoform a 
CEP78                 0.017   centrosomal protein 78kDa isoform a 
CEP78                 0.017   centrosomal protein 78kDa isoform b 
LOC643854             0.017   hypothetical protein LOC643854 
KIF16B                0.017   kinesin-like motor protein C20orf23 
NLRP4                 0.015   NLR family, pyrin domain containing 4 
TNNT2                 0.015   troponin T type 2, cardiac isoform 3 
TNNT2                 0.015   troponin T type 2, cardiac isoform 2 
NLRP8                 0.015   NLR family, pyrin domain containing 8 
TCTE1                 0.014   t-complex-associated testis expressed 1 
MYBPC2                0.014   myosin binding protein C, fast type 
CTAGE4                0.014   CTAGE family, member 4 
NCOA1                 0.014   nuclear receptor coactivator 1 isoform 2 
NCOA1                 0.014   nuclear receptor coactivator 1 isoform 3 
NCOA1                 0.014   nuclear receptor coactivator 1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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