Guide to the Human Genome
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Name: LRRC41 Sequence: fasta or formatted (812aa) NCBI GI: 38569471
Description:

MUF1 protein

Referenced in:

RNA Polymerase and General Transcription Factors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.0         89           3
 C cysteine            2.5         20           1
 D aspartate           3.8         31           1
 E glutamate           6.2         50           2
 F phenylalanine       3.8         31           2
 G glycine             6.3         51           2
 H histidine           2.2         18           2
 I isoleucine          3.0         24           2
 K lysine              3.1         25           2
 L leucine            13.9        113           3
 M methionine          1.8         15           1
 N asparagine          2.1         17           1
 P proline             6.3         51           2
 Q glutamine           3.9         32           2
 R arginine            8.1         66           2
 S serine             11.0         89           4
 T threonine           4.6         37           2
 V valine              4.1         33           2
 W tryptophan          1.5         12           1
 Y tyrosine            1.0          8           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   MUF1 protein 
ARL6IP4               0.015   SRp25 nuclear protein isoform 1 
NLRC3                 0.013   NOD3 protein 
NFKBIL2               0.013   NF-kappa-B inhibitor-like protein 2 
SRRM2                 0.011   splicing coactivator subunit SRm300 
MCTP1                 0.011   multiple C2 domains, transmembrane 1 isoform L [Hom...
TNRC18                0.010   trinucleotide repeat containing 18 
BASP1                 0.010   brain abundant, membrane attached signal protein 1 [...
ARL6IP4               0.010   SRp25 nuclear protein isoform 3 
FAM48B1               0.009   hypothetical protein LOC100130302 
LOC100293375          0.009   PREDICTED: hypothetical protein 
MACF1                 0.009   microfilament and actin filament cross-linker protei...
MACF1                 0.009   microfilament and actin filament cross-linker protei...
SCAF1                 0.009   SR-related CTD-associated factor 1 
PHF2                  0.009   PHD finger protein 2 
RNH1                  0.009   ribonuclease/angiogenin inhibitor 
RNH1                  0.009   ribonuclease/angiogenin inhibitor 
RNH1                  0.009   ribonuclease/angiogenin inhibitor 
RNH1                  0.009   ribonuclease/angiogenin inhibitor 
RNH1                  0.009   ribonuclease/angiogenin inhibitor 
RNH1                  0.009   ribonuclease/angiogenin inhibitor 
RNH1                  0.009   ribonuclease/angiogenin inhibitor 
RNH1                  0.009   ribonuclease/angiogenin inhibitor 
C14orf166B            0.009   hypothetical protein LOC145497 
MARCKS                0.009   myristoylated alanine-rich protein kinase C substra...
LOC100134702          0.008   PREDICTED: similar to mucin 
LRRC34                0.008   leucine rich repeat containing 34 
AFF3                  0.008   AF4/FMR2 family, member 3 isoform 2 
AFF3                  0.008   AF4/FMR2 family, member 3 isoform 1 
MAP3K10               0.008   mitogen-activated protein kinase kinase kinase 10 [H...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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