Guide to the Human Genome
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Name: HSPB8 Sequence: fasta or formatted (196aa) NCBI GI: 7657146
Description:

heat shock 22kDa protein 8

Referenced in:

Heat-Shock Proteins and Chaperonins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1         10           1
 C cysteine            1.5          3           1
 D aspartate           6.1         12           2
 E glutamate           7.1         14           2
 F phenylalanine       5.6         11           1
 G glycine             7.7         15           2
 H histidine           1.5          3           1
 I isoleucine          2.0          4           2
 K lysine              4.6          9           2
 L leucine             7.1         14           2
 M methionine          2.6          5           1
 N asparagine          2.0          4           2
 P proline            12.8         25           3
 Q glutamine           3.6          7           2
 R arginine            5.1         10           2
 S serine              9.2         18           2
 T threonine           5.6         11           1
 V valine              7.1         14           1
 W tryptophan          2.0          4           1
 Y tyrosine            1.5          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   heat shock 22kDa protein 8 
HSPB1                 0.231   heat shock protein beta-1 
CRYAB                 0.144   crystallin, alpha B 
HSPB6                 0.121   heat shock protein, alpha-crystallin-related, B6 [Ho...
CRYAA                 0.108   crystallin, alpha A 
HSPB2                 0.098   heat shock 27kDa protein 2 
HSPB7                 0.082   cardiovascular heat shock protein 
HSPB3                 0.077   heat shock 27kDa protein 3 
HSPB9                 0.031   heat shock protein, alpha-crystallin-related, B9 [Ho...
ODF1                  0.028   outer dense fiber of sperm tails 1 
PYGO2                 0.021   pygopus homolog 2 
DOK7                  0.021   downstream of tyrosine kinase 7 
LOC729570             0.018   PREDICTED: hypothetical protein 
LOC729570             0.018   PREDICTED: hypothetical protein 
LOC729570             0.018   PREDICTED: hypothetical protein 
SMARCC1               0.018   SWI/SNF-related matrix-associated actin-dependent r...
WIPF1                 0.015   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.015   WAS/WASL interacting protein family, member 1 
SRCAP                 0.013   Snf2-related CBP activator protein 
SOLH                  0.013   small optic lobes 
WDFY4                 0.013   WDFY family member 4 
NFATC4                0.013   nuclear factor of activated T-cells, cytoplasmic, c...
NFATC4                0.013   nuclear factor of activated T-cells, cytoplasmic, ca...
LOC100133142          0.010   PREDICTED: similar to zinc finger protein 208 [Homo...
LOC100133142          0.010   PREDICTED: similar to zinc finger protein 208 [Homo...
PEX13                 0.010   peroxisomal biogenesis factor 13 
ARL17                 0.010   ADP-ribosylation factor-like 17 isoform a 
ARL17P1               0.010   hypothetical protein LOC51326 isoform a 
MUC5B                 0.010   mucin 5, subtype B, tracheobronchial 
MYO18A                0.010   myosin 18A isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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