Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: HSPB3 Sequence: fasta or formatted (150aa) NCBI GI: 5453688
Description:

heat shock 27kDa protein 3

Referenced in:

Heat-Shock Proteins and Chaperonins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         10           2
 C cysteine            1.3          2           1
 D aspartate           7.3         11           1
 E glutamate           8.0         12           2
 F phenylalanine       4.0          6           1
 G glycine             6.0          9           1
 H histidine           4.0          6           1
 I isoleucine          8.7         13           3
 K lysine              5.3          8           1
 L leucine            10.7         16           2
 M methionine          1.3          2           1
 N asparagine          0.0          0           0
 P proline             6.7         10           2
 Q glutamine           4.7          7           1
 R arginine            6.7         10           1
 S serine              4.0          6           1
 T threonine           4.7          7           1
 V valine              7.3         11           2
 W tryptophan          0.7          1           1
 Y tyrosine            2.0          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   heat shock 27kDa protein 3 
HSPB2                 0.168   heat shock 27kDa protein 2 
HSPB1                 0.158   heat shock protein beta-1 
HSPB6                 0.151   heat shock protein, alpha-crystallin-related, B6 [Ho...
CRYAA                 0.143   crystallin, alpha A 
CRYAB                 0.129   crystallin, alpha B 
HSPB8                 0.108   heat shock 22kDa protein 8 
HSPB7                 0.054   cardiovascular heat shock protein 
HSPB9                 0.022   heat shock protein, alpha-crystallin-related, B9 [Ho...
NUCB2                 0.014   nucleobindin 2 
SUPV3L1               0.014   suppressor of var1, 3-like 1 
ATP13A5               0.014   ATPase type 13A5 
GAS2L2                0.014   growth arrest-specific 2 like 2 
DLAT                  0.011   dihydrolipoamide S-acetyltransferase 
DDX28                 0.007   DEAD (Asp-Glu-Ala-Asp) box polypeptide 28 
ARHGAP12              0.007   Rho GTPase activating protein 12 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press