Guide to the Human Genome
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Name: HSPB1 Sequence: fasta or formatted (205aa) NCBI GI: 4504517
Description:

heat shock protein beta-1

Referenced in:

Heat-Shock Proteins and Chaperonins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         17           2
 C cysteine            0.5          1           1
 D aspartate           4.9         10           1
 E glutamate           7.8         16           2
 F phenylalanine       3.4          7           1
 G glycine             6.3         13           2
 H histidine           2.4          5           1
 I isoleucine          2.9          6           1
 K lysine              3.4          7           1
 L leucine             7.8         16           2
 M methionine          1.0          2           1
 N asparagine          1.0          2           1
 P proline            10.2         21           2
 Q glutamine           3.4          7           1
 R arginine            7.8         16           2
 S serine             10.2         21           3
 T threonine           6.8         14           1
 V valine              6.3         13           2
 W tryptophan          2.9          6           1
 Y tyrosine            2.4          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   heat shock protein beta-1 
CRYAB                 0.248   crystallin, alpha B 
HSPB8                 0.226   heat shock 22kDa protein 8 
CRYAA                 0.208   crystallin, alpha A 
HSPB2                 0.188   heat shock 27kDa protein 2 
HSPB6                 0.188   heat shock protein, alpha-crystallin-related, B6 [Ho...
HSPB3                 0.110   heat shock 27kDa protein 3 
HSPB7                 0.073   cardiovascular heat shock protein 
ODF1                  0.048   outer dense fiber of sperm tails 1 
HSPB9                 0.038   heat shock protein, alpha-crystallin-related, B9 [Ho...
GUCY1A2               0.020   guanylate cyclase 1, soluble, alpha 2 
MLLT4                 0.020   myeloid/lymphoid or mixed-lineage leukemia (trithora...
C1orf113              0.018   SH3 domain-containing protein C1orf113 isoform 1 [H...
C1orf113              0.018   SH3 domain-containing protein C1orf113 isoform 2 [H...
VEPH1                 0.018   ventricular zone expressed PH domain homolog 1 [Homo...
TRAF3IP1              0.015   TNF receptor-associated factor 3 interacting protei...
TRAF3IP1              0.015   TNF receptor-associated factor 3 interacting protein...
AGER                  0.013   advanced glycosylation end product-specific receptor...
CDC2L5                0.013   cell division cycle 2-like 5 isoform 1 
CDC2L5                0.013   cell division cycle 2-like 5 isoform 2 
ALKBH7                0.010   spermatogenesis associated 11 
FLJ32682              0.010   hypothetical protein LOC220081 
HOXD4                 0.008   homeobox D4 
MUC16                 0.008   mucin 16 
OXSR1                 0.008   oxidative-stress responsive 1 
LOC100293840          0.008   PREDICTED: hypothetical protein 
C1orf167              0.008   PREDICTED: chromosome 1 open reading frame 167 [Hom...
LOC100290046          0.008   PREDICTED: hypothetical protein XP_002346831 
C1orf167              0.008   PREDICTED: chromosome 1 open reading frame 167 [Hom...
LOC100287550          0.008   PREDICTED: hypothetical protein XP_002342664 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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