Guide to the Human Genome
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Name: HSPB7 Sequence: fasta or formatted (170aa) NCBI GI: 7657202
Description:

cardiovascular heat shock protein

Referenced in:

Heat-Shock Proteins and Chaperonins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.4         16           2
 C cysteine            0.6          1           1
 D aspartate           6.5         11           2
 E glutamate           6.5         11           1
 F phenylalanine       5.9         10           1
 G glycine             4.1          7           2
 H histidine           4.7          8           1
 I isoleucine          4.1          7           2
 K lysine              2.9          5           1
 L leucine             4.7          8           1
 M methionine          2.9          5           1
 N asparagine          2.4          4           2
 P proline             6.5         11           2
 Q glutamine           2.4          4           2
 R arginine            7.6         13           2
 S serine             15.3         26           9
 T threonine           8.2         14           2
 V valine              4.7          8           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cardiovascular heat shock protein 
HSPB2                 0.105   heat shock 27kDa protein 2 
HSPB8                 0.102   heat shock 22kDa protein 8 
HSPB1                 0.092   heat shock protein beta-1 
CRYAB                 0.092   crystallin, alpha B 
HSPB6                 0.092   heat shock protein, alpha-crystallin-related, B6 [Ho...
CRYAA                 0.067   crystallin, alpha A 
HSPB3                 0.048   heat shock 27kDa protein 3 
HSPB9                 0.038   heat shock protein, alpha-crystallin-related, B9 [Ho...
ASH1L                 0.032   absent, small, or homeotic 1-like 
SRRM2                 0.032   splicing coactivator subunit SRm300 
MLLT3                 0.029   myeloid/lymphoid or mixed-lineage leukemia (trithor...
SETD1A                0.029   SET domain containing 1A 
TNRC18                0.029   trinucleotide repeat containing 18 
ZBTB4                 0.029   zinc finger and BTB domain containing 4 
ZBTB4                 0.029   zinc finger and BTB domain containing 4 
LOC100133142          0.025   PREDICTED: similar to zinc finger protein 208 [Homo...
LOC100133142          0.025   PREDICTED: similar to zinc finger protein 208 [Homo...
HEG1                  0.025   HEG homolog 1 
NFE2L1                0.022   nuclear factor erythroid 2-like 1 
DEPDC5                0.022   DEP domain containing 5 isoform 3 
DEPDC5                0.022   DEP domain containing 5 isoform 2 
DEPDC5                0.022   DEP domain containing 5 isoform 1 
KCNMA1                0.019   large conductance calcium-activated potassium chann...
KCNMA1                0.019   large conductance calcium-activated potassium chann...
KCNMA1                0.019   large conductance calcium-activated potassium channe...
KCNMA1                0.019   large conductance calcium-activated potassium channe...
PPRC1                 0.019   peroxisome proliferator-activated receptor gamma, co...
MLLT6                 0.019   myeloid/lymphoid or mixed-lineage leukemia (trithora...
SHE                   0.019   Src homology 2 domain containing E 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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