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Search of human proteins with 7656977
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7656977 calcitonin gene-related peptide-receptor component
protein isoform a [Homo sapiens]
(148 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7656977 calcitonin gene-related peptide-receptor component pr... 290 4e-79
gi|100913026 calcitonin gene-related peptide-receptor component ... 208 2e-54
gi|227495694 calcitonin gene-related peptide-receptor component ... 206 6e-54
gi|100913028 calcitonin gene-related peptide-receptor component ... 133 6e-32
gi|154240722 hypothetical protein LOC399949 isoform 1 [Homo sapi... 33 0.067
gi|19924131 RAD50 homolog isoform 2 [Homo sapiens] 33 0.087
gi|19924129 RAD50 homolog isoform 1 [Homo sapiens] 33 0.087
gi|19923399 Ras-GTPase activating protein SH3 domain-binding pro... 32 0.15
gi|45359849 Ras-GTPase activating protein SH3 domain-binding pro... 32 0.15
gi|45359846 Ras-GTPase activating protein SH3 domain-binding pro... 32 0.15
gi|41281453 serine/threonine kinase 2 [Homo sapiens] 32 0.19
gi|35038601 spindle assembly abnormal protein 6 [Homo sapiens] 32 0.19
gi|122891870 melanoma inhibitory activity family, member 3 [Homo... 32 0.25
gi|212549538 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 12 [Ho... 32 0.25
gi|126723547 hypothetical protein LOC57523 [Homo sapiens] 32 0.25
gi|146133848 golgi autoantigen, golgin subfamily a, 6 [Homo sapi... 32 0.25
gi|100913204 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 iso... 31 0.33
gi|100913202 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 iso... 31 0.33
gi|132566527 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 iso... 31 0.33
gi|58082089 hypothetical protein LOC161394 [Homo sapiens] 31 0.33
gi|62750349 histone deacetylase 5 isoform 3 [Homo sapiens] 31 0.43
gi|62750347 histone deacetylase 5 isoform 1 [Homo sapiens] 31 0.43
gi|219689123 pleckstrin homology domain containing, family A mem... 31 0.43
gi|19923493 pleckstrin homology domain containing, family A memb... 31 0.43
gi|223634475 golgi autoantigen, golgin subfamily a, 6D [Homo sap... 30 0.57
gi|169206326 PREDICTED: hypothetical protein [Homo sapiens] 30 0.57
gi|169206576 PREDICTED: hypothetical protein [Homo sapiens] 30 0.57
gi|51472437 PREDICTED: golgi autoantigen, golgin subfamily a, 6C... 30 0.57
gi|169205717 PREDICTED: hypothetical protein [Homo sapiens] 30 0.57
gi|94538359 golgi autoantigen, golgin subfamily a, 6B [Homo sapi... 30 0.57
>gi|7656977 calcitonin gene-related peptide-receptor component
protein isoform a [Homo sapiens]
Length = 148
Score = 290 bits (741), Expect = 4e-79
Identities = 148/148 (100%), Positives = 148/148 (100%)
Query: 1 MEVKDANSALLSNYEVFQLLTDLKEQRKESGKNKHSSGQQNLNTITYETLKYISKTPCRH 60
MEVKDANSALLSNYEVFQLLTDLKEQRKESGKNKHSSGQQNLNTITYETLKYISKTPCRH
Sbjct: 1 MEVKDANSALLSNYEVFQLLTDLKEQRKESGKNKHSSGQQNLNTITYETLKYISKTPCRH 60
Query: 61 QSPEIVREFLTALKSHKLTKAEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTV 120
QSPEIVREFLTALKSHKLTKAEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTV
Sbjct: 61 QSPEIVREFLTALKSHKLTKAEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTV 120
Query: 121 TSILPAEPEAEQKKNTNSNVAMDEEDPA 148
TSILPAEPEAEQKKNTNSNVAMDEEDPA
Sbjct: 121 TSILPAEPEAEQKKNTNSNVAMDEEDPA 148
>gi|100913026 calcitonin gene-related peptide-receptor component
protein isoform b [Homo sapiens]
Length = 115
Score = 208 bits (529), Expect = 2e-54
Identities = 115/148 (77%), Positives = 115/148 (77%), Gaps = 33/148 (22%)
Query: 1 MEVKDANSALLSNYEVFQLLTDLKEQRKESGKNKHSSGQQNLNTITYETLKYISKTPCRH 60
MEVKDANSALLSNYE TLKYISKTPCRH
Sbjct: 1 MEVKDANSALLSNYE---------------------------------TLKYISKTPCRH 27
Query: 61 QSPEIVREFLTALKSHKLTKAEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTV 120
QSPEIVREFLTALKSHKLTKAEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTV
Sbjct: 28 QSPEIVREFLTALKSHKLTKAEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTV 87
Query: 121 TSILPAEPEAEQKKNTNSNVAMDEEDPA 148
TSILPAEPEAEQKKNTNSNVAMDEEDPA
Sbjct: 88 TSILPAEPEAEQKKNTNSNVAMDEEDPA 115
>gi|227495694 calcitonin gene-related peptide-receptor component
protein isoform d [Homo sapiens]
Length = 141
Score = 206 bits (524), Expect = 6e-54
Identities = 114/147 (77%), Positives = 114/147 (77%), Gaps = 33/147 (22%)
Query: 2 EVKDANSALLSNYEVFQLLTDLKEQRKESGKNKHSSGQQNLNTITYETLKYISKTPCRHQ 61
EVKDANSALLSNYE TLKYISKTPCRHQ
Sbjct: 28 EVKDANSALLSNYE---------------------------------TLKYISKTPCRHQ 54
Query: 62 SPEIVREFLTALKSHKLTKAEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTVT 121
SPEIVREFLTALKSHKLTKAEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTVT
Sbjct: 55 SPEIVREFLTALKSHKLTKAEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTVT 114
Query: 122 SILPAEPEAEQKKNTNSNVAMDEEDPA 148
SILPAEPEAEQKKNTNSNVAMDEEDPA
Sbjct: 115 SILPAEPEAEQKKNTNSNVAMDEEDPA 141
>gi|100913028 calcitonin gene-related peptide-receptor component
protein isoform c [Homo sapiens]
Length = 71
Score = 133 bits (334), Expect = 6e-32
Identities = 68/68 (100%), Positives = 68/68 (100%)
Query: 81 AEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTVTSILPAEPEAEQKKNTNSNV 140
AEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTVTSILPAEPEAEQKKNTNSNV
Sbjct: 4 AEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTVTSILPAEPEAEQKKNTNSNV 63
Query: 141 AMDEEDPA 148
AMDEEDPA
Sbjct: 64 AMDEEDPA 71
>gi|154240722 hypothetical protein LOC399949 isoform 1 [Homo
sapiens]
Length = 196
Score = 33.5 bits (75), Expect = 0.067
Identities = 38/151 (25%), Positives = 69/151 (45%), Gaps = 22/151 (14%)
Query: 6 ANSALLSNYEVFQLLTDLKEQRKESGKNKHSSGQQNLNTITYETLKYISKTPCRHQSPEI 65
+ S L+ + Q L + +R +N HSS Q+ + + + ++ +S E
Sbjct: 50 SESQLVLRRDSSQRLPVARPRRSRGSENSHSS--QSFHLASNKNRDIFAEALKIQESEEK 107
Query: 66 VREFLTALKSHKLTKAE---------KLQLLNHRPVTAVEI-QLMVEESEERLTEEQIEA 115
V+ +L +SH +T+ E + QL + T EI QL+ ++ EER+++E I
Sbjct: 108 VK-YLQKTRSHSVTQNEVQWHDHGSLQPQLSRIQAKTREEILQLLRKQREERISKELIS- 165
Query: 116 LLHTVTSILPAEPEAEQKKNTNSNVAMDEED 146
LP +P+A++ K D+ED
Sbjct: 166 --------LPYKPKAKEHKAKKVVSESDKED 188
>gi|19924131 RAD50 homolog isoform 2 [Homo sapiens]
Length = 1173
Score = 33.1 bits (74), Expect = 0.087
Identities = 34/148 (22%), Positives = 65/148 (43%), Gaps = 8/148 (5%)
Query: 1 MEVKDANSALLSNYEVFQLLTDLKEQRKESGKNKHSSGQQNLNTITYETLKYISKTPCRH 60
ME+KD + Q + DL ++ + K Q L+T++ + +
Sbjct: 661 MELKDVERKIAQQAAKLQGI-DLDRTVQQVNQEKQEK-QHKLDTVSSKIELNRKLIQDQQ 718
Query: 61 QSPEIVREFLTALKSHKL---TKAEKLQLLNHRPVT-AVEIQLMVEESEERLTEEQIEAL 116
+ + ++ LKS KL T ++ Q L + V + E+Q + E ++ +EQ+ L
Sbjct: 719 EQIQHLKSTTNELKSEKLQISTNLQRRQQLEEQTVELSTEVQSLYREIKD--AKEQVSPL 776
Query: 117 LHTVTSILPAEPEAEQKKNTNSNVAMDE 144
T+ + E KKNT++ +A D+
Sbjct: 777 ETTLEKFQQEKEELINKKNTSNKIAQDK 804
>gi|19924129 RAD50 homolog isoform 1 [Homo sapiens]
Length = 1312
Score = 33.1 bits (74), Expect = 0.087
Identities = 34/148 (22%), Positives = 65/148 (43%), Gaps = 8/148 (5%)
Query: 1 MEVKDANSALLSNYEVFQLLTDLKEQRKESGKNKHSSGQQNLNTITYETLKYISKTPCRH 60
ME+KD + Q + DL ++ + K Q L+T++ + +
Sbjct: 800 MELKDVERKIAQQAAKLQGI-DLDRTVQQVNQEKQEK-QHKLDTVSSKIELNRKLIQDQQ 857
Query: 61 QSPEIVREFLTALKSHKL---TKAEKLQLLNHRPVT-AVEIQLMVEESEERLTEEQIEAL 116
+ + ++ LKS KL T ++ Q L + V + E+Q + E ++ +EQ+ L
Sbjct: 858 EQIQHLKSTTNELKSEKLQISTNLQRRQQLEEQTVELSTEVQSLYREIKD--AKEQVSPL 915
Query: 117 LHTVTSILPAEPEAEQKKNTNSNVAMDE 144
T+ + E KKNT++ +A D+
Sbjct: 916 ETTLEKFQQEKEELINKKNTSNKIAQDK 943
>gi|19923399 Ras-GTPase activating protein SH3 domain-binding
protein 2 isoform a [Homo sapiens]
Length = 482
Score = 32.3 bits (72), Expect = 0.15
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 59 RHQSPEIVREFLTA--LKSHKLTKA--EKLQLLNHRPVTAVEIQLMVEESEERLTEEQIE 114
R SPE V+E + ++H +T E L+ +H P E + EE + ++ E+ +E
Sbjct: 160 RQPSPEPVQENANSGYYEAHPVTNGIEEPLEESSHEPEPEPESETKTEELKPQVEEKNLE 219
Query: 115 ALLHTVTSILPAEP 128
L T+ PAEP
Sbjct: 220 ELEEKSTTPPPAEP 233
>gi|45359849 Ras-GTPase activating protein SH3 domain-binding
protein 2 isoform a [Homo sapiens]
Length = 482
Score = 32.3 bits (72), Expect = 0.15
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 59 RHQSPEIVREFLTA--LKSHKLTKA--EKLQLLNHRPVTAVEIQLMVEESEERLTEEQIE 114
R SPE V+E + ++H +T E L+ +H P E + EE + ++ E+ +E
Sbjct: 160 RQPSPEPVQENANSGYYEAHPVTNGIEEPLEESSHEPEPEPESETKTEELKPQVEEKNLE 219
Query: 115 ALLHTVTSILPAEP 128
L T+ PAEP
Sbjct: 220 ELEEKSTTPPPAEP 233
>gi|45359846 Ras-GTPase activating protein SH3 domain-binding
protein 2 isoform b [Homo sapiens]
Length = 449
Score = 32.3 bits (72), Expect = 0.15
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 59 RHQSPEIVREFLTA--LKSHKLTKA--EKLQLLNHRPVTAVEIQLMVEESEERLTEEQIE 114
R SPE V+E + ++H +T E L+ +H P E + EE + ++ E+ +E
Sbjct: 160 RQPSPEPVQENANSGYYEAHPVTNGIEEPLEESSHEPEPEPESETKTEELKPQVEEKNLE 219
Query: 115 ALLHTVTSILPAEP 128
L T+ PAEP
Sbjct: 220 ELEEKSTTPPPAEP 233
>gi|41281453 serine/threonine kinase 2 [Homo sapiens]
Length = 1235
Score = 32.0 bits (71), Expect = 0.19
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 74 KSHKLTKAEKL--QLLNHRPVTAVEIQLMVEESEERLTEEQIEAL--LHTVTSILPAEPE 129
K+ + +KL ++LN +P T E + VE+ E +T+ Q+EA+ LH T+++
Sbjct: 366 KTERSNSEDKLNSKILNEKPTTD-EPEKAVEDINEHITDAQLEAMTELHDRTAVIKENER 424
Query: 130 AEQKKNTNSNVAMDEE 145
++ K N D+E
Sbjct: 425 EKRPKLENLPDTEDQE 440
>gi|35038601 spindle assembly abnormal protein 6 [Homo sapiens]
Length = 657
Score = 32.0 bits (71), Expect = 0.19
Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 20/116 (17%)
Query: 2 EVKDANSALLSNYEVFQLLTDLKEQRKESG-KNKHSSG--QQNLNTITYETLKYISKTPC 58
E+KD + +L E F + + K +E+G KN+ G + + +++ E LK
Sbjct: 330 EIKDKDQLVLRTKEAFDTIQEQKVVLEENGEKNQVQLGKLEATIKSLSAELLK------- 382
Query: 59 RHQSPEIVREFLTALKSHKLTKAEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIE 114
+ EI+++ LK T KL+L N ++ + ++ E EE+L +EQ E
Sbjct: 383 ---ANEIIKKLQGDLK----TLMGKLKLKN---TVTIQQEKLLAEKEEKLQKEQKE 428
>gi|122891870 melanoma inhibitory activity family, member 3 [Homo
sapiens]
Length = 1907
Score = 31.6 bits (70), Expect = 0.25
Identities = 25/124 (20%), Positives = 60/124 (48%), Gaps = 17/124 (13%)
Query: 13 NYEVFQLLTDLKEQRKESGKNKHSSGQQNLNTITYETLKYISKTPCRHQSPEIV----RE 68
N E+ Q L++ +++ KES K+ + +QN+ ++ E +KY K ++ EI+ +
Sbjct: 1227 NTELVQKLSNYEQKIKESKKHVQETRKQNM-ILSDEAIKYKDKIKTLEKNQEILDDTAKN 1285
Query: 69 FLTALKSHKLTKAEKLQLLNHRPVTAVEI------------QLMVEESEERLTEEQIEAL 116
L+S + + L++ + ++ ++ + +E +L+EE++++
Sbjct: 1286 LRVMLESEREQNVKNQDLISENKKSIEKLKDVISMNASEFSEVQIALNEAKLSEEKVKSE 1345
Query: 117 LHTV 120
H V
Sbjct: 1346 CHRV 1349
>gi|212549538 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 12 [Homo
sapiens]
Length = 906
Score = 31.6 bits (70), Expect = 0.25
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Query: 70 LTALKSHKLTKAEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTVTSILPAEPE 129
L A ++ + + E+LQ L HR +QL R EE+ E LL +L PE
Sbjct: 130 LKAEQARRKQREERLQQLQHR------VQLKYAAKRLRQEEEERENLLRLSREMLETGPE 183
Query: 130 AEQKKNTNS 138
AE+ + S
Sbjct: 184 AERPEQLES 192
>gi|126723547 hypothetical protein LOC57523 [Homo sapiens]
Length = 1898
Score = 31.6 bits (70), Expect = 0.25
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Query: 66 VRE--FLTALKSHKLTKAEKLQLLNHRPVTAVEIQLMVEESEER----LTEEQIEALLHT 119
VRE FLT L S K+ QL N + +T + + MV+ +EE +T EQI L+++
Sbjct: 847 VRESHFLTKLHSLKMLSITPSQLENGKKITTYDYRFMVKLAEETDGIIVTNEQIHILMNS 906
Query: 120 VTSIL 124
++
Sbjct: 907 SKKLM 911
>gi|146133848 golgi autoantigen, golgin subfamily a, 6 [Homo
sapiens]
Length = 693
Score = 31.6 bits (70), Expect = 0.25
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
Query: 68 EFLTALKSHKLTK--AE---KLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLH 118
E L ++HKL K AE + LN+ +A++++ V+E +E+L EE +EA H
Sbjct: 428 ERLALSQNHKLDKQLAEPQCSFEDLNNEKKSALQLEQQVKELQEKLDEEHLEAASH 483
>gi|100913204 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11
isoform 2 [Homo sapiens]
Length = 856
Score = 31.2 bits (69), Expect = 0.33
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Query: 70 LTALKSHKLTKAEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTVTSILPAEPE 129
L A ++ + + E+LQ L HR +QL R EE+ E LL +L PE
Sbjct: 130 LKAEQARRKQREERLQQLQHR------VQLKYAAKRLRQEEEERENLLRLSREMLETGPE 183
Query: 130 AEQKKNTNS 138
AE+ + S
Sbjct: 184 AERLEQLES 192
>gi|100913202 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11
isoform 1 [Homo sapiens]
Length = 906
Score = 31.2 bits (69), Expect = 0.33
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Query: 70 LTALKSHKLTKAEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTVTSILPAEPE 129
L A ++ + + E+LQ L HR +QL R EE+ E LL +L PE
Sbjct: 130 LKAEQARRKQREERLQQLQHR------VQLKYAAKRLRQEEEERENLLRLSREMLETGPE 183
Query: 130 AEQKKNTNS 138
AE+ + S
Sbjct: 184 AERLEQLES 192
>gi|132566527 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11
isoform 3 [Homo sapiens]
Length = 970
Score = 31.2 bits (69), Expect = 0.33
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Query: 70 LTALKSHKLTKAEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTVTSILPAEPE 129
L A ++ + + E+LQ L HR +QL R EE+ E LL +L PE
Sbjct: 130 LKAEQARRKQREERLQQLQHR------VQLKYAAKRLRQEEEERENLLRLSREMLETGPE 183
Query: 130 AEQKKNTNS 138
AE+ + S
Sbjct: 184 AERLEQLES 192
>gi|58082089 hypothetical protein LOC161394 [Homo sapiens]
Length = 674
Score = 31.2 bits (69), Expect = 0.33
Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 19/139 (13%)
Query: 24 KEQRKESGKNKHSSG--QQNLNTITYETLKYISKT---PCRHQSPEIVREF---LTALKS 75
+E ++ES + K + Q L + E K + P PE+ E T K
Sbjct: 242 EETQRESTEKKRTEPPEQARLEFLEKEPRKSSEEAGLEPPEETQPEVPEEMQRKATEEKG 301
Query: 76 HKLTKAEKLQLLNHRPVTAV---------EIQLMVEESEERLTEEQIEALLHTVTSILPA 126
+L + K +H+P + EI+L E E R T E E +L + P
Sbjct: 302 TELPERTKPDFPDHKPRKSTDENVPEPLEEIKLEFPEEESRKTNE--ETILEQSEMMKPE 359
Query: 127 EPEAEQKKNTNSNVAMDEE 145
PE +K N N EE
Sbjct: 360 SPEEIRKSNEKKNPQPPEE 378
>gi|62750349 histone deacetylase 5 isoform 3 [Homo sapiens]
Length = 1123
Score = 30.8 bits (68), Expect = 0.43
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 7/92 (7%)
Query: 61 QSPEIVREFLTALKSHKLTKAEKLQLLNHRPVTAVEIQLM------VEESEERLTEEQIE 114
QSP+ +++ + + + + +K Q L + +L EE+EE LTE+Q E
Sbjct: 504 QSPQALQQLVMQQQHQQFLEKQKQQQLQLGKILTKTGELPRQPTTHPEETEEELTEQQ-E 562
Query: 115 ALLHTVTSILPAEPEAEQKKNTNSNVAMDEED 146
LL +P E E + DEED
Sbjct: 563 VLLGEGALTMPREGSTESESTQEDLEEEDEED 594
>gi|62750347 histone deacetylase 5 isoform 1 [Homo sapiens]
Length = 1122
Score = 30.8 bits (68), Expect = 0.43
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 7/92 (7%)
Query: 61 QSPEIVREFLTALKSHKLTKAEKLQLLNHRPVTAVEIQLM------VEESEERLTEEQIE 114
QSP+ +++ + + + + +K Q L + +L EE+EE LTE+Q E
Sbjct: 503 QSPQALQQLVMQQQHQQFLEKQKQQQLQLGKILTKTGELPRQPTTHPEETEEELTEQQ-E 561
Query: 115 ALLHTVTSILPAEPEAEQKKNTNSNVAMDEED 146
LL +P E E + DEED
Sbjct: 562 VLLGEGALTMPREGSTESESTQEDLEEEDEED 593
>gi|219689123 pleckstrin homology domain containing, family A member
5 isoform 2 [Homo sapiens]
Length = 1105
Score = 30.8 bits (68), Expect = 0.43
Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 15/130 (11%)
Query: 20 LTDLKEQRKESGKNKHSSGQQNLNTITYETLKYISKTPCRHQSP----EIVREFLTALKS 75
LT + E + +G+ K + ++ + + P R +SP + ++T K+
Sbjct: 802 LTTVAEVDESNGEEKSEPVSEIETSVVKGSHFPVGVVPPRAKSPTPESSTIASYVTLRKT 861
Query: 76 HKLTKAEKLQLLNHRPVTAVEIQLMVEESEERLT-EEQIEALLHTVTSILPAEPEAEQKK 134
K+ + L RP +AVE + E + R+T EEQ+E + + L E+KK
Sbjct: 862 KKM-----MDLRTERPRSAVEQLCLAESTRPRMTVEEQMERIRRHQQACL-----REKKK 911
Query: 135 NTNSNVAMDE 144
N A D+
Sbjct: 912 GLNVIGASDQ 921
>gi|19923493 pleckstrin homology domain containing, family A member
5 isoform 1 [Homo sapiens]
Length = 1116
Score = 30.8 bits (68), Expect = 0.43
Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 15/130 (11%)
Query: 20 LTDLKEQRKESGKNKHSSGQQNLNTITYETLKYISKTPCRHQSP----EIVREFLTALKS 75
LT + E + +G+ K + ++ + + P R +SP + ++T K+
Sbjct: 813 LTTVAEVDESNGEEKSEPVSEIETSVVKGSHFPVGVVPPRAKSPTPESSTIASYVTLRKT 872
Query: 76 HKLTKAEKLQLLNHRPVTAVEIQLMVEESEERLT-EEQIEALLHTVTSILPAEPEAEQKK 134
K+ + L RP +AVE + E + R+T EEQ+E + + L E+KK
Sbjct: 873 KKM-----MDLRTERPRSAVEQLCLAESTRPRMTVEEQMERIRRHQQACL-----REKKK 922
Query: 135 NTNSNVAMDE 144
N A D+
Sbjct: 923 GLNVIGASDQ 932
>gi|223634475 golgi autoantigen, golgin subfamily a, 6D [Homo
sapiens]
Length = 693
Score = 30.4 bits (67), Expect = 0.57
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 14/91 (15%)
Query: 68 EFLTALKSHKLTK--AE---KLQLLNHRPVTAVEIQLMVEESEERLTEEQIEAL------ 116
E L ++HKL K AE + LN+ +A++++ V+E +E+L EE +EA
Sbjct: 428 ERLALSQNHKLDKQLAEPQCSFEDLNNEKKSALQLEQQVKELQEKLDEEHLEAASQRNQQ 487
Query: 117 LHTVTSILPAEPEAEQKKNTNSNVAMDEEDP 147
L T S++ E + ++ +S +EE P
Sbjct: 488 LETQLSLVALPGEGDGGQHLDSE---EEEAP 515
>gi|169206326 PREDICTED: hypothetical protein [Homo sapiens]
Length = 189
Score = 30.4 bits (67), Expect = 0.57
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 46 TYETLKYISK-----TPCRHQSPEIVREFLTALKSHKLTKAEKLQLLNHRPVTAVEIQLM 100
T + L Y++K C+ S ++ R L + T+A +++ R VTAVEIQ
Sbjct: 70 TGQELMYLAKGQQRLEACQQLSEKVTRSNLEMTTAPVFTRANVFEIMQFRHVTAVEIQHK 129
Query: 101 VE 102
+E
Sbjct: 130 LE 131
>gi|169206576 PREDICTED: hypothetical protein [Homo sapiens]
Length = 189
Score = 30.4 bits (67), Expect = 0.57
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 46 TYETLKYISK-----TPCRHQSPEIVREFLTALKSHKLTKAEKLQLLNHRPVTAVEIQLM 100
T + L Y++K C+ S ++ R L + T+A +++ R VTAVEIQ
Sbjct: 70 TGQELMYLAKGQQRLEACQQLSEKVTRSNLEMTTAPVFTRANVFEIMQFRHVTAVEIQHK 129
Query: 101 VE 102
+E
Sbjct: 130 LE 131
>gi|51472437 PREDICTED: golgi autoantigen, golgin subfamily a, 6C
isoform 1 [Homo sapiens]
Length = 693
Score = 30.4 bits (67), Expect = 0.57
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 14/91 (15%)
Query: 68 EFLTALKSHKLTK--AE---KLQLLNHRPVTAVEIQLMVEESEERLTEEQIEAL------ 116
E L ++HKL K AE + LN+ +A++++ V+E +E+L EE +EA
Sbjct: 428 ERLALSQNHKLDKQLAEPQCSFEDLNNEKKSALQLEQQVKELQEKLDEEHLEAASQRNQQ 487
Query: 117 LHTVTSILPAEPEAEQKKNTNSNVAMDEEDP 147
L T S++ E + ++ +S +EE P
Sbjct: 488 LETQLSLVALPGEGDGGQHLDSE---EEEAP 515
>gi|169205717 PREDICTED: hypothetical protein [Homo sapiens]
Length = 189
Score = 30.4 bits (67), Expect = 0.57
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 46 TYETLKYISK-----TPCRHQSPEIVREFLTALKSHKLTKAEKLQLLNHRPVTAVEIQLM 100
T + L Y++K C+ S ++ R L + T+A +++ R VTAVEIQ
Sbjct: 70 TGQELMYLAKGQQRLEACQQLSEKVTRSNLEMTTAPVFTRANVFEIMQFRHVTAVEIQHK 129
Query: 101 VE 102
+E
Sbjct: 130 LE 131
>gi|94538359 golgi autoantigen, golgin subfamily a, 6B [Homo
sapiens]
Length = 693
Score = 30.4 bits (67), Expect = 0.57
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 14/91 (15%)
Query: 68 EFLTALKSHKLTK--AE---KLQLLNHRPVTAVEIQLMVEESEERLTEEQIEAL------ 116
E L ++HKL K AE + LN+ +A++++ V+E +E+L EE +EA
Sbjct: 428 ERLALSQNHKLDKQLAEPQCSFEDLNNEKKSALQLEQQVKELQEKLDEEHLEAASQQNQQ 487
Query: 117 LHTVTSILPAEPEAEQKKNTNSNVAMDEEDP 147
L T S++ E + ++ +S +EE P
Sbjct: 488 LETQLSLVALPGEGDGGQHLDSE---EEEAP 515
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.306 0.122 0.319
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,236,867
Number of Sequences: 37866
Number of extensions: 206329
Number of successful extensions: 958
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 897
Number of HSP's gapped (non-prelim): 117
length of query: 148
length of database: 18,247,518
effective HSP length: 93
effective length of query: 55
effective length of database: 14,725,980
effective search space: 809928900
effective search space used: 809928900
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.