Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100129538 Sequence: fasta or formatted (189aa) NCBI GI: 169206326
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {189aa} PREDICTED: hypothetical protein
alt mRNA {189aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         15           2
 C cysteine            2.1          4           1
 D aspartate           3.2          6           1
 E glutamate          11.6         22           2
 F phenylalanine       3.2          6           1
 G glycine             5.8         11           3
 H histidine           3.7          7           1
 I isoleucine          2.1          4           1
 K lysine              5.8         11           1
 L leucine             9.0         17           2
 M methionine          2.6          5           1
 N asparagine          1.6          3           1
 P proline             4.8          9           1
 Q glutamine           8.5         16           3
 R arginine            7.9         15           2
 S serine              3.7          7           1
 T threonine           6.3         12           2
 V valine              5.8         11           2
 W tryptophan          1.1          2           1
 Y tyrosine            3.2          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100129538          1.000   PREDICTED: hypothetical protein 
LOC100129538          1.000   PREDICTED: hypothetical protein 
GOLIM4                0.025   golgi integral membrane protein 4 
MAP2                  0.022   microtubule-associated protein 2 isoform 1 
DMGDH                 0.019   dimethylglycine dehydrogenase precursor 
CRCP                  0.014   calcitonin gene-related peptide-receptor component pr...
FILIP1                0.014   filamin A interacting protein 1 
DEF6                  0.014   differentially expressed in FDCP 6 homolog 
CRCP                  0.014   calcitonin gene-related peptide-receptor component ...
DST                   0.014   dystonin isoform 4 
DST                   0.014   dystonin isoform 3 
DST                   0.014   dystonin isoform 2 
DST                   0.014   dystonin isoform 1 
DST                   0.014   dystonin isoform 1eA precursor 
CRCP                  0.014   calcitonin gene-related peptide-receptor component ...
LMTK2                 0.011   lemur tyrosine kinase 2 
EEA1                  0.011   early endosome antigen 1, 162kD 
DNAH12                0.008   dynein heavy chain domain 2 isoform 1 
NCCRP1                0.008   non-specific cytotoxic cell receptor protein 1 homol...
SETD1A                0.008   SET domain containing 1A 
PHRF1                 0.008   PHD and ring finger domains 1 
CCDC99                0.008   coiled-coil domain containing 99 
GRID2IP               0.006   glutamate receptor, ionotropic, delta 2 (Grid2) int...
DSP                   0.006   desmoplakin isoform I 
PSTPIP2               0.006   proline-serine-threonine phosphatase interacting pr...
WHSC2                 0.006   Wolf-Hirschhorn syndrome candidate 2 protein 
KLHL14                0.006   kelch-like 14 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press