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Search of human proteins with 75709194
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|75709194 hypothetical protein LOC29086 [Homo sapiens]
(329 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|75709194 hypothetical protein LOC29086 [Homo sapiens] 669 0.0
gi|75709192 hypothetical protein LOC29086 [Homo sapiens] 669 0.0
gi|218505787 protocadherin 15 isoform CD2-1 precursor [Homo sapi... 40 0.004
gi|13491174 MARCKS-like 1 [Homo sapiens] 39 0.008
gi|237512980 voltage-gated sodium channel type V alpha isoform e... 38 0.014
gi|30089970 voltage-gated sodium channel type V alpha isoform b ... 38 0.014
gi|48255881 troponin T type 2, cardiac isoform 3 [Homo sapiens] 37 0.024
gi|48255879 troponin T type 2, cardiac isoform 2 [Homo sapiens] 37 0.024
gi|37622907 voltage-gated sodium channel type V alpha isoform a ... 36 0.041
gi|150417969 voltage-gated sodium channel type V alpha isoform d... 36 0.041
gi|150417967 voltage-gated sodium channel type V alpha isoform c... 36 0.041
gi|48255883 troponin T type 2, cardiac isoform 4 [Homo sapiens] 36 0.041
gi|48255877 troponin T type 2, cardiac isoform 1 [Homo sapiens] 36 0.054
gi|116284392 mucin 2 precursor [Homo sapiens] 36 0.054
gi|239749951 PREDICTED: similar to mucin 2 [Homo sapiens] 36 0.054
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens] 36 0.054
gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Hom... 35 0.070
gi|8923842 forkhead box J2 [Homo sapiens] 35 0.070
gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1 ... 35 0.092
gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2 ... 35 0.092
gi|30089948 protein phosphatase 1E [Homo sapiens] 35 0.12
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 34 0.16
gi|42476169 Paf1, RNA polymerase II associated factor, homolog [... 34 0.16
gi|239748090 PREDICTED: similar to sodium channel, voltage-gated... 34 0.20
gi|149588930 gastrulation brain homeo box 1 [Homo sapiens] 34 0.20
gi|218749848 family with sequence similarity 38, member A [Homo ... 33 0.27
gi|21735415 centromere protein B [Homo sapiens] 33 0.35
gi|21493022 A kinase (PRKA) anchor protein 12 isoform 1 [Homo sa... 33 0.35
gi|21493024 A kinase (PRKA) anchor protein 12 isoform 2 [Homo sa... 33 0.35
gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens] 33 0.35
>gi|75709194 hypothetical protein LOC29086 [Homo sapiens]
Length = 329
Score = 669 bits (1725), Expect = 0.0
Identities = 329/329 (100%), Positives = 329/329 (100%)
Query: 1 MEVAEPSSPTEEEEEEEEHSAEPRPRTRSNPEGAEDRAVGAQASVGSRSEGEGEAASADD 60
MEVAEPSSPTEEEEEEEEHSAEPRPRTRSNPEGAEDRAVGAQASVGSRSEGEGEAASADD
Sbjct: 1 MEVAEPSSPTEEEEEEEEHSAEPRPRTRSNPEGAEDRAVGAQASVGSRSEGEGEAASADD 60
Query: 61 GSLNTSGAGPKSWQVPPPAPEVQIRTPRVNCPEKVIICLDLSEEMSLPKLESFNGSKTNA 120
GSLNTSGAGPKSWQVPPPAPEVQIRTPRVNCPEKVIICLDLSEEMSLPKLESFNGSKTNA
Sbjct: 61 GSLNTSGAGPKSWQVPPPAPEVQIRTPRVNCPEKVIICLDLSEEMSLPKLESFNGSKTNA 120
Query: 121 LNVSQKMIEMFVRTKHKIDKSHEFALVVVNDDTAWLSGLTSDPRELCSCLYDLETASCST 180
LNVSQKMIEMFVRTKHKIDKSHEFALVVVNDDTAWLSGLTSDPRELCSCLYDLETASCST
Sbjct: 121 LNVSQKMIEMFVRTKHKIDKSHEFALVVVNDDTAWLSGLTSDPRELCSCLYDLETASCST 180
Query: 181 FNLEGLFSLIQQKTELPVTENVQTIPPPYVVRTILVYSRPPCQPQFSLTEPMKKMFQCPY 240
FNLEGLFSLIQQKTELPVTENVQTIPPPYVVRTILVYSRPPCQPQFSLTEPMKKMFQCPY
Sbjct: 181 FNLEGLFSLIQQKTELPVTENVQTIPPPYVVRTILVYSRPPCQPQFSLTEPMKKMFQCPY 240
Query: 241 FFFDVVYIHNGTEEKEEEMSWKDMFAFMGSLDTKGTSYKYEVALAGPALELHNCMAKLLA 300
FFFDVVYIHNGTEEKEEEMSWKDMFAFMGSLDTKGTSYKYEVALAGPALELHNCMAKLLA
Sbjct: 241 FFFDVVYIHNGTEEKEEEMSWKDMFAFMGSLDTKGTSYKYEVALAGPALELHNCMAKLLA 300
Query: 301 HPLQRPCQSHASYSLLEEEDEAIEVEATV 329
HPLQRPCQSHASYSLLEEEDEAIEVEATV
Sbjct: 301 HPLQRPCQSHASYSLLEEEDEAIEVEATV 329
>gi|75709192 hypothetical protein LOC29086 [Homo sapiens]
Length = 329
Score = 669 bits (1725), Expect = 0.0
Identities = 329/329 (100%), Positives = 329/329 (100%)
Query: 1 MEVAEPSSPTEEEEEEEEHSAEPRPRTRSNPEGAEDRAVGAQASVGSRSEGEGEAASADD 60
MEVAEPSSPTEEEEEEEEHSAEPRPRTRSNPEGAEDRAVGAQASVGSRSEGEGEAASADD
Sbjct: 1 MEVAEPSSPTEEEEEEEEHSAEPRPRTRSNPEGAEDRAVGAQASVGSRSEGEGEAASADD 60
Query: 61 GSLNTSGAGPKSWQVPPPAPEVQIRTPRVNCPEKVIICLDLSEEMSLPKLESFNGSKTNA 120
GSLNTSGAGPKSWQVPPPAPEVQIRTPRVNCPEKVIICLDLSEEMSLPKLESFNGSKTNA
Sbjct: 61 GSLNTSGAGPKSWQVPPPAPEVQIRTPRVNCPEKVIICLDLSEEMSLPKLESFNGSKTNA 120
Query: 121 LNVSQKMIEMFVRTKHKIDKSHEFALVVVNDDTAWLSGLTSDPRELCSCLYDLETASCST 180
LNVSQKMIEMFVRTKHKIDKSHEFALVVVNDDTAWLSGLTSDPRELCSCLYDLETASCST
Sbjct: 121 LNVSQKMIEMFVRTKHKIDKSHEFALVVVNDDTAWLSGLTSDPRELCSCLYDLETASCST 180
Query: 181 FNLEGLFSLIQQKTELPVTENVQTIPPPYVVRTILVYSRPPCQPQFSLTEPMKKMFQCPY 240
FNLEGLFSLIQQKTELPVTENVQTIPPPYVVRTILVYSRPPCQPQFSLTEPMKKMFQCPY
Sbjct: 181 FNLEGLFSLIQQKTELPVTENVQTIPPPYVVRTILVYSRPPCQPQFSLTEPMKKMFQCPY 240
Query: 241 FFFDVVYIHNGTEEKEEEMSWKDMFAFMGSLDTKGTSYKYEVALAGPALELHNCMAKLLA 300
FFFDVVYIHNGTEEKEEEMSWKDMFAFMGSLDTKGTSYKYEVALAGPALELHNCMAKLLA
Sbjct: 241 FFFDVVYIHNGTEEKEEEMSWKDMFAFMGSLDTKGTSYKYEVALAGPALELHNCMAKLLA 300
Query: 301 HPLQRPCQSHASYSLLEEEDEAIEVEATV 329
HPLQRPCQSHASYSLLEEEDEAIEVEATV
Sbjct: 301 HPLQRPCQSHASYSLLEEEDEAIEVEATV 329
>gi|218505787 protocadherin 15 isoform CD2-1 precursor [Homo sapiens]
Length = 1790
Score = 39.7 bits (91), Expect = 0.004
Identities = 30/80 (37%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
Query: 2 EVAEPSSPTEEEEEEEEHSAEP-----RPRTRSNPEGAEDRAVGAQASVGSRSEGEGEAA 56
E EP EE EEEE P P + PE E A A G SE E E+
Sbjct: 1689 EQKEPKMEEEEHSEEEESGPAPVEESTDPEAQDIPE--EGSAESASVEGGVESEEESESG 1746
Query: 57 SADDGSLNTSGAGPKSWQVP 76
S+ S + SG GP +QVP
Sbjct: 1747 SSSSSSESQSG-GPWGYQVP 1765
>gi|13491174 MARCKS-like 1 [Homo sapiens]
Length = 195
Score = 38.5 bits (88), Expect = 0.008
Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 7 SSPTEEEEEEEEHSA------EPRPRTRSNPEGAEDRAVGAQASVGSRSEGEGEAASADD 60
SSPTEEE+E+ E A + + PE E +A GA+AS S E +A
Sbjct: 119 SSPTEEEQEQGEIGACSDEGTAQEGKAAATPESQEPQAKGAEASAASEEEAGPQATEPST 178
Query: 61 GSLNTSGAGPKS 72
S SG P S
Sbjct: 179 PSGPESGPTPAS 190
>gi|237512980 voltage-gated sodium channel type V alpha isoform e
[Homo sapiens]
Length = 1983
Score = 37.7 bits (86), Expect = 0.014
Identities = 29/97 (29%), Positives = 39/97 (40%), Gaps = 16/97 (16%)
Query: 3 VAEPSSPTEEEEEE------EEHSAEPRPRTRSNPEGAEDRAVGAQASVGSRSEGEGEAA 56
VAE + +EE+EE EE S + PE D +Q S + SE E A+
Sbjct: 1051 VAESDTDDQEEDEENSLGTEEESSKQESQPVSGGPEAPPDSRTWSQVSATASSEAEASAS 1110
Query: 57 SADDGSLNTSGAGPKSWQVPPPAPEVQIRTPRVNCPE 93
AD + W+ P AP TP +C E
Sbjct: 1111 QAD---------WRQQWKAEPQAPGCG-ETPEDSCSE 1137
>gi|30089970 voltage-gated sodium channel type V alpha isoform b [Homo
sapiens]
Length = 2015
Score = 37.7 bits (86), Expect = 0.014
Identities = 29/97 (29%), Positives = 39/97 (40%), Gaps = 16/97 (16%)
Query: 3 VAEPSSPTEEEEEE------EEHSAEPRPRTRSNPEGAEDRAVGAQASVGSRSEGEGEAA 56
VAE + +EE+EE EE S + PE D +Q S + SE E A+
Sbjct: 1051 VAESDTDDQEEDEENSLGTEEESSKQESQPVSGGPEAPPDSRTWSQVSATASSEAEASAS 1110
Query: 57 SADDGSLNTSGAGPKSWQVPPPAPEVQIRTPRVNCPE 93
AD + W+ P AP TP +C E
Sbjct: 1111 QAD---------WRQQWKAEPQAPGCG-ETPEDSCSE 1137
>gi|48255881 troponin T type 2, cardiac isoform 3 [Homo sapiens]
Length = 285
Score = 37.0 bits (84), Expect = 0.024
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 11 EEEEEEEEHSAEPRPRTRSNPEGAEDRAVGAQASVGSRSEGEGEAASADDGSLNTSGAGP 70
EE EEEE+ A + + E AE A + + E E EA A+DG + S P
Sbjct: 9 EEYEEEEQEEAAVEEQEEAAEEDAEAEAE-TEETRAEEDEEEEEAKEAEDGPMEESKPKP 67
Query: 71 KSWQ---VPPPAPE 81
+S+ VPP P+
Sbjct: 68 RSFMPNLVPPKIPD 81
>gi|48255879 troponin T type 2, cardiac isoform 2 [Homo sapiens]
Length = 288
Score = 37.0 bits (84), Expect = 0.024
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 11 EEEEEEEEHSAEPRPRTRSNPEGAEDRAVGAQASVGSRSEGEGEAASADDGSLNTSGAGP 70
EE EEEE+ A + + E AE A + + E E EA A+DG + S P
Sbjct: 9 EEYEEEEQEEAAVEEQEEAAEEDAEAEAE-TEETRAEEDEEEEEAKEAEDGPMEESKPKP 67
Query: 71 KSWQ---VPPPAPE 81
+S+ VPP P+
Sbjct: 68 RSFMPNLVPPKIPD 81
>gi|37622907 voltage-gated sodium channel type V alpha isoform a [Homo
sapiens]
Length = 2016
Score = 36.2 bits (82), Expect = 0.041
Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 21/101 (20%)
Query: 3 VAEPSSPTEEEEEEEEHSA----------EPRPRTRSNPEGAEDRAVGAQASVGSRSEGE 52
+A S T+++EE+EE+S E +P PE D +Q S + SE E
Sbjct: 1049 IAVAESDTDDQEEDEENSLGTEEESSKQQESQP-VSGGPEAPPDSRTWSQVSATASSEAE 1107
Query: 53 GEAASADDGSLNTSGAGPKSWQVPPPAPEVQIRTPRVNCPE 93
A+ AD + W+ P AP TP +C E
Sbjct: 1108 ASASQAD---------WRQQWKAEPQAPGCG-ETPEDSCSE 1138
>gi|150417969 voltage-gated sodium channel type V alpha isoform d
[Homo sapiens]
Length = 1998
Score = 36.2 bits (82), Expect = 0.041
Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 21/101 (20%)
Query: 3 VAEPSSPTEEEEEEEEHSA----------EPRPRTRSNPEGAEDRAVGAQASVGSRSEGE 52
+A S T+++EE+EE+S E +P PE D +Q S + SE E
Sbjct: 1049 IAVAESDTDDQEEDEENSLGTEEESSKQQESQP-VSGGPEAPPDSRTWSQVSATASSEAE 1107
Query: 53 GEAASADDGSLNTSGAGPKSWQVPPPAPEVQIRTPRVNCPE 93
A+ AD + W+ P AP TP +C E
Sbjct: 1108 ASASQAD---------WRQQWKAEPQAPGCG-ETPEDSCSE 1138
>gi|150417967 voltage-gated sodium channel type V alpha isoform c
[Homo sapiens]
Length = 2016
Score = 36.2 bits (82), Expect = 0.041
Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 21/101 (20%)
Query: 3 VAEPSSPTEEEEEEEEHSA----------EPRPRTRSNPEGAEDRAVGAQASVGSRSEGE 52
+A S T+++EE+EE+S E +P PE D +Q S + SE E
Sbjct: 1049 IAVAESDTDDQEEDEENSLGTEEESSKQQESQP-VSGGPEAPPDSRTWSQVSATASSEAE 1107
Query: 53 GEAASADDGSLNTSGAGPKSWQVPPPAPEVQIRTPRVNCPE 93
A+ AD + W+ P AP TP +C E
Sbjct: 1108 ASASQAD---------WRQQWKAEPQAPGCG-ETPEDSCSE 1138
>gi|48255883 troponin T type 2, cardiac isoform 4 [Homo sapiens]
Length = 282
Score = 36.2 bits (82), Expect = 0.041
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 13/74 (17%)
Query: 11 EEEEEEEEHSAEPRPRTRSNPEGAEDRAVGAQASVGSRSEGEGEAASADDGSLNTSGAGP 70
EEE+EE+E +AE + E E RA E E EA A+DG + S P
Sbjct: 13 EEEQEEQEEAAEEDAEAEAETE--ETRA--------EEDEEEEEAKEAEDGPMEESKPKP 62
Query: 71 KSWQ---VPPPAPE 81
+S+ VPP P+
Sbjct: 63 RSFMPNLVPPKIPD 76
>gi|48255877 troponin T type 2, cardiac isoform 1 [Homo sapiens]
Length = 295
Score = 35.8 bits (81), Expect = 0.054
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 6/86 (6%)
Query: 2 EVAEPSSPTEEEEEEEEHSAEPRPRTRSNPEGAEDRAVGAQASVGSRSEG---EGEAASA 58
EV E E+EE E + R E AE+ A + +R+E E EA A
Sbjct: 6 EVVEEYEEEEQEEAAVEEEEDWREDEDEQEEAAEEDAEAEAETEETRAEEDEEEEEAKEA 65
Query: 59 DDGSLNTSGAGPKSWQ---VPPPAPE 81
+DG + S P+S+ VPP P+
Sbjct: 66 EDGPMEESKPKPRSFMPNLVPPKIPD 91
>gi|116284392 mucin 2 precursor [Homo sapiens]
Length = 5179
Score = 35.8 bits (81), Expect = 0.054
Identities = 28/113 (24%), Positives = 42/113 (37%), Gaps = 10/113 (8%)
Query: 4 AEPSSPTEEEEEEEEHSAEPRPRTRSNPEGAEDRAVGAQASVGSRSEGEGEAASADDGSL 63
A PS+PT H+ P P T ++P G R + G A +
Sbjct: 4251 APPSTPTAPTTTSGGHTLSPPPSTTTSPPGTPTRGT---------TTGSSSAPTPSTVQT 4301
Query: 64 NTSGAGPKSWQVPPPAPEVQIRTPRVNCPEKVIICLDLSEEMSLPKLESFNGS 116
T+ A + P P + T P V+IC L++ P E +NG+
Sbjct: 4302 TTTSAWTPT-PTPLSTPSIIRTTGLRPYPSSVLICCVLNDTYYAPGEEVYNGT 4353
>gi|239749951 PREDICTED: similar to mucin 2 [Homo sapiens]
Length = 2639
Score = 35.8 bits (81), Expect = 0.054
Identities = 28/113 (24%), Positives = 42/113 (37%), Gaps = 10/113 (8%)
Query: 4 AEPSSPTEEEEEEEEHSAEPRPRTRSNPEGAEDRAVGAQASVGSRSEGEGEAASADDGSL 63
A PS+PT H+ P P T ++P G R + G A +
Sbjct: 1711 APPSTPTAPTTTSGGHTLSPPPSTTTSPPGTPTRGT---------TTGSSSAPTPSTVQT 1761
Query: 64 NTSGAGPKSWQVPPPAPEVQIRTPRVNCPEKVIICLDLSEEMSLPKLESFNGS 116
T+ A + P P + T P V+IC L++ P E +NG+
Sbjct: 1762 TTTSAWTPT-PTPLSTPSIIRTTGLRPYPSSVLICCVLNDTYYAPGEEVYNGT 1813
>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
Length = 1312
Score = 35.8 bits (81), Expect = 0.054
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Query: 4 AEPSSPTEEEEEEEEHSAEPRPRTRSNPEGAEDRAVGAQASVGSRSEGEGEAASADDGSL 63
AE EEEEEEEE E +P T + A A A ++ S G+ + A+DG
Sbjct: 1021 AEEEEEEEEEEEEEEEEEEQQPATTT----ATSTAAAAPSTAPSAGSTAGD-SGAEDGPA 1075
Query: 64 NTSGAGPKSWQVPPPAP 80
+ P +PPP P
Sbjct: 1076 SRVSQLP---TLPPPMP 1089
Score = 29.6 bits (65), Expect = 3.9
Identities = 28/88 (31%), Positives = 36/88 (40%), Gaps = 12/88 (13%)
Query: 8 SPTEEEEEEEEHSAEPRPRTRSNPEGAEDRAVGAQASVGSRSEGEGEAASADDGSLNTSG 67
+P+ EEEEEEE E E E+ G S+ S E A DD SL+
Sbjct: 264 TPSPEEEEEEEEEEE-------EEEEDEEEEEGLSQSISRIS--ETLAGIYDDNSLSQDF 314
Query: 68 AGPKSWQVPPPAPEVQIRTPRVNCPEKV 95
G +S P P + TP P +V
Sbjct: 315 PGDES---PRPDAQPTQPTPAPGTPPQV 339
>gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Homo
sapiens]
Length = 1152
Score = 35.4 bits (80), Expect = 0.070
Identities = 22/68 (32%), Positives = 24/68 (35%)
Query: 2 EVAEPSSPTEEEEEEEEHSAEPRPRTRSNPEGAEDRAVGAQASVGSRSEGEGEAASADDG 61
EV E EEEEEE E E EG E+ G G EGE E +
Sbjct: 818 EVEEGKGEREEEEEEGEGEEEEGEGEEEEGEGEEEEGEGKGEEEGEEGEGEEEGEEGEGE 877
Query: 62 SLNTSGAG 69
G G
Sbjct: 878 GEEEEGEG 885
Score = 32.7 bits (73), Expect = 0.46
Identities = 20/68 (29%), Positives = 23/68 (33%)
Query: 2 EVAEPSSPTEEEEEEEEHSAEPRPRTRSNPEGAEDRAVGAQASVGSRSEGEGEAASADDG 61
E E E E E EE E EG E+ G G EGEGE +
Sbjct: 881 EEGEGEGEEEGEGEGEEEEGEGEGEEEGEGEGEEEEGEGKGEEEGEEGEGEGEEEEGEGE 940
Query: 62 SLNTSGAG 69
+ G G
Sbjct: 941 GEDGEGEG 948
Score = 31.6 bits (70), Expect = 1.0
Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 2 EVAEPSSPTEEEEEEEEHSAEPRPRTRSNPEGAEDRAVGAQASV-GSRSEGEGEAASADD 60
E E EEEE EEE E EG E+ + V G EGEGE ++
Sbjct: 982 EEEEGEGEGEEEEGEEEGEEEGEGEEEGEGEGEEEEEGEVEGEVEGEEGEGEGEEEEGEE 1041
Score = 28.9 bits (63), Expect = 6.6
Identities = 18/60 (30%), Positives = 21/60 (35%)
Query: 2 EVAEPSSPTEEEEEEEEHSAEPRPRTRSNPEGAEDRAVGAQASVGSRSEGEGEAASADDG 61
E E E E EEEE E E E G + G E EGE ++G
Sbjct: 866 EGEEEGEEGEGEGEEEEGEGEGEEEGEGEGEEEEGEGEGEEEGEGEGEEEEGEGKGEEEG 925
>gi|8923842 forkhead box J2 [Homo sapiens]
Length = 574
Score = 35.4 bits (80), Expect = 0.070
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 6 PSSPTEEEEEEEEHSAEPRPRTRSN------PEGAEDRAVGAQASVGSRSEGEGEAASAD 59
P ++ E+E S PR + PEG ++ + S+ S S+G G S D
Sbjct: 156 PDDDLSQDSPEQEASKSPRGGVAGSGEASLPPEGNPQMSLQSPTSIASYSQGTG---SVD 212
Query: 60 DGSLNTSGAGPKSWQVPPP 78
G++ +G +S + PPP
Sbjct: 213 GGAVAAGASGRESAEGPPP 231
>gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1
[Homo sapiens]
Length = 916
Score = 35.0 bits (79), Expect = 0.092
Identities = 19/59 (32%), Positives = 28/59 (47%)
Query: 2 EVAEPSSPTEEEEEEEEHSAEPRPRTRSNPEGAEDRAVGAQASVGSRSEGEGEAASADD 60
E E EEEEE+E ++ S EG+ ++ G Q + +E EGE A A +
Sbjct: 526 EKEEEEGQEEEEEEDEGAKSDQAEEGGSEKEGSSEKEEGEQEEGETEAEAEGEEAEAKE 584
Score = 32.0 bits (71), Expect = 0.78
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 2 EVAEPSSPTEEEE-EEEEHSAEPRPRTRSNPEGAEDRAVGAQASVGSRSEGEGEA 55
EV E EEEE +EEE + ++ EG ++ ++ G + EGE EA
Sbjct: 519 EVKEEEGEKEEEEGQEEEEEEDEGAKSDQAEEGGSEKEGSSEKEEGEQEEGETEA 573
>gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2
[Homo sapiens]
Length = 540
Score = 35.0 bits (79), Expect = 0.092
Identities = 19/59 (32%), Positives = 28/59 (47%)
Query: 2 EVAEPSSPTEEEEEEEEHSAEPRPRTRSNPEGAEDRAVGAQASVGSRSEGEGEAASADD 60
E E EEEEE+E ++ S EG+ ++ G Q + +E EGE A A +
Sbjct: 150 EKEEEEGQEEEEEEDEGAKSDQAEEGGSEKEGSSEKEEGEQEEGETEAEAEGEEAEAKE 208
Score = 32.0 bits (71), Expect = 0.78
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 2 EVAEPSSPTEEEE-EEEEHSAEPRPRTRSNPEGAEDRAVGAQASVGSRSEGEGEA 55
EV E EEEE +EEE + ++ EG ++ ++ G + EGE EA
Sbjct: 143 EVKEEEGEKEEEEGQEEEEEEDEGAKSDQAEEGGSEKEGSSEKEEGEQEEGETEA 197
>gi|30089948 protein phosphatase 1E [Homo sapiens]
Length = 755
Score = 34.7 bits (78), Expect = 0.12
Identities = 25/92 (27%), Positives = 33/92 (35%), Gaps = 21/92 (22%)
Query: 12 EEEEEEEHSAEPRPRTRSNPEGAEDRAVGAQASVGSRSEGEGEAASADDGSLN------- 64
E E E E EP P + PE A A+ASV E A+ ++G
Sbjct: 30 EPEPEPEPEPEPEPESEPEPEPELVEAEAAEASVEEPGEEAATVAATEEGDQEQDPEPEE 89
Query: 65 --------------TSGAGPKSWQVPPPAPEV 82
T+ A P VPPP P++
Sbjct: 90 EAAVEGEEEEEGAATAAAAPGHSAVPPPPPQL 121
>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
Length = 2400
Score = 34.3 bits (77), Expect = 0.16
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
Query: 17 EEHSAEPRPRTRSNPEGAEDRAVGAQASVGSRSEGEGE---AASADDGSLNTSGAGPKSW 73
+E + +P P P R A GSR E + + G SG P S
Sbjct: 889 QEGTRQPGPTPSPGPNSGASRRSSASQGAGSRGLSEEKTLRSGGGPQGQEEASGVSPSS- 947
Query: 74 QVPPPAPEVQIRTPRVNCPEK-VIICLDLSEE 104
+P +PE +R N PE+ +++ +L++E
Sbjct: 948 -LPRSSPEAVVREWLDNIPEEPILMTYELADE 978
Score = 30.8 bits (68), Expect = 1.7
Identities = 27/108 (25%), Positives = 38/108 (35%), Gaps = 9/108 (8%)
Query: 13 EEEEEEHSAEPRPRTRSNPEGAEDRAVGAQASVGSRSEGEGEAASADDGSLNTSGAGPKS 72
E E+E R T G ED G A+ G + G+ + A + A P+S
Sbjct: 1789 EAEQEGEGISERGETGGQGSGHEDNLQGEAAAGGDQDPGQSDGAEGIEAPEAEGEAQPES 1848
Query: 73 WQVPPPAP---------EVQIRTPRVNCPEKVIICLDLSEEMSLPKLE 111
V P E Q + V PE SE++ P+ E
Sbjct: 1849 EGVEAPEAEGDAQEAEGEAQPESEDVEAPEAEGEAQPESEDVETPEAE 1896
Score = 29.3 bits (64), Expect = 5.0
Identities = 22/77 (28%), Positives = 29/77 (37%), Gaps = 15/77 (19%)
Query: 13 EEEEEEHSAEPRPRTRSNPEGAEDRAVGAQASVGSRSEGEGEAASADDGSL--------- 63
E E E A+P PEG E +A S E +GE + SL
Sbjct: 2213 EAPEAEEEAQPE------PEGVETPEAEGEAQPESEGETQGEKKGSPQVSLGDGQSEEAS 2266
Query: 64 NTSGAGPKSWQVPPPAP 80
+S P+ PPP+P
Sbjct: 2267 ESSSPVPEDRPTPPPSP 2283
>gi|42476169 Paf1, RNA polymerase II associated factor, homolog
[Homo sapiens]
Length = 531
Score = 34.3 bits (77), Expect = 0.16
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 1 MEVAEPSSPTEEEEEEEEHSA-----EPRPRTRSNPEGAEDRAVGAQASVGSRSEGEGEA 55
+E EP EEE E EE A E + S EG+ED G+++ R EG+ +
Sbjct: 371 LENHEPEEEEEEEMETEEKEAGGSDEEQEKGSSSEKEGSEDEHSGSES---EREEGDRDE 427
Query: 56 ASADDGS 62
AS GS
Sbjct: 428 ASDKSGS 434
Score = 28.9 bits (63), Expect = 6.6
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 2 EVAEPSSPTEEEEEEEEHSAEPRPRTRSNPEGAEDRAVGAQASVGSRSEGEGEAASADD 60
E E S +E+E E+EHS R + + A D+ + G E EA +A D
Sbjct: 396 EEQEKGSSSEKEGSEDEHSGSESEREEGDRDEASDK-----SGSGEDESSEDEARAARD 449
>gi|239748090 PREDICTED: similar to sodium channel, voltage-gated,
type V, alpha (long QT syndrome 3) [Homo sapiens]
Length = 1637
Score = 33.9 bits (76), Expect = 0.20
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 20/88 (22%)
Query: 3 VAEPSSPTEEEEEEEEHSA----------EPRPRTRSNPEGAEDRAVGAQASVGSRSEGE 52
+A S T+++EE+EE+S E +P PE D +Q S + SE E
Sbjct: 750 IAVAESDTDDQEEDEENSLGTEEESSKQQESQP-VSGGPEAPPDSRTWSQVSATASSEAE 808
Query: 53 GEAASADDGSLNTSGAGPKSWQVPPPAP 80
A+ AD + W+ P AP
Sbjct: 809 ASASQAD---------WRQQWKAEPQAP 827
>gi|149588930 gastrulation brain homeo box 1 [Homo sapiens]
Length = 363
Score = 33.9 bits (76), Expect = 0.20
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Query: 2 EVAEPSSPTEEEEEEEEHSAEPRPRTRSNPEGAEDRAVGAQASVGSRSEGEGEAASADDG 61
+VAEP P E S + S+ E + + G A EG G S DDG
Sbjct: 159 KVAEPPPPPPPHFSETFPSLPAEGKVYSSDEEKLEASAGDPAGSEQEEEGSG-GDSEDDG 217
Query: 62 SLNTSGAGPKSWQVPPP 78
L++S GP + P P
Sbjct: 218 FLDSSAGGPGALLGPKP 234
>gi|218749848 family with sequence similarity 38, member A [Homo
sapiens]
Length = 2090
Score = 33.5 bits (75), Expect = 0.27
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 10 TEEEEEEEEHSAEPRPRTRSNPEGAEDRAV-GAQASVGSRSEGEGEAASADDGSLNTSGA 68
++ EEEEE +PRP +S + A V AQA + R + + +A G L T G
Sbjct: 992 SDSEEEEEAVPEDPRPSAQSAFQLAYQAWVTNAQAVLRRRQQEQEQARQEQAGQLPT-GG 1050
Query: 69 GPKSWQVPPPAPE 81
GP P PE
Sbjct: 1051 GPSQEVEPAEGPE 1063
>gi|21735415 centromere protein B [Homo sapiens]
Length = 599
Score = 33.1 bits (74), Expect = 0.35
Identities = 17/69 (24%), Positives = 26/69 (37%)
Query: 5 EPSSPTEEEEEEEEHSAEPRPRTRSNPEGAEDRAVGAQASVGSRSEGEGEAASADDGSLN 64
E EEEEEE E E EG E +G + V + + + +D +
Sbjct: 408 EEEEEEEEEEEEGEGEEEEEEGEEEEEEGGEGEELGEEEEVEEEGDVDSDEEEEEDEESS 467
Query: 65 TSGAGPKSW 73
+ G + W
Sbjct: 468 SEGLEAEDW 476
>gi|21493022 A kinase (PRKA) anchor protein 12 isoform 1 [Homo
sapiens]
Length = 1782
Score = 33.1 bits (74), Expect = 0.35
Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 16/120 (13%)
Query: 8 SPTEEEEEEEEHSAEPRPRTRSNPEGAEDRAVGAQASVGSRSEGEGEAASADDGSLNTSG 67
SP +EE++ E SA S+PE E+ + + +GE E + DG G
Sbjct: 554 SPDSQEEQKGESSA-------SSPEEPEEITCLEKGLAEVQQDGEAEEGATSDGEKKREG 606
Query: 68 AGPKSWQVPPPAPEVQIRTPRVNCPEKVIICLDLSEEMSLPKLESFNGSKTNALNVSQKM 127
P + P+ ++R P + D +E+ K + + +++ A + ++M
Sbjct: 607 VTPWASFKKMVTPKKRVRRPSES---------DKEDELDKVKSATLSSTESTASEMQEEM 657
>gi|21493024 A kinase (PRKA) anchor protein 12 isoform 2 [Homo
sapiens]
Length = 1684
Score = 33.1 bits (74), Expect = 0.35
Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 16/120 (13%)
Query: 8 SPTEEEEEEEEHSAEPRPRTRSNPEGAEDRAVGAQASVGSRSEGEGEAASADDGSLNTSG 67
SP +EE++ E SA S+PE E+ + + +GE E + DG G
Sbjct: 456 SPDSQEEQKGESSA-------SSPEEPEEITCLEKGLAEVQQDGEAEEGATSDGEKKREG 508
Query: 68 AGPKSWQVPPPAPEVQIRTPRVNCPEKVIICLDLSEEMSLPKLESFNGSKTNALNVSQKM 127
P + P+ ++R P + D +E+ K + + +++ A + ++M
Sbjct: 509 VTPWASFKKMVTPKKRVRRPSES---------DKEDELDKVKSATLSSTESTASEMQEEM 559
>gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens]
Length = 1120
Score = 33.1 bits (74), Expect = 0.35
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 11/84 (13%)
Query: 6 PSSPTEEEEEEEEHSAEPRPRTRSNPEGAEDRAVGAQASVGS-RSEGEGEAASADDGSLN 64
P P EE +S PR + + +VG++ SVGS RS G G++ S
Sbjct: 289 PQPPAEEPPHPLTYSQLPRVGLSPDSPAGDRNSVGSEGSVGSIRSAGSGQS------SEG 342
Query: 65 TSGAGP----KSWQVPPPAPEVQI 84
T+G GP ++ Q P A E Q+
Sbjct: 343 TNGHGPGLLIENAQPLPSAGEDQV 366
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.129 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,265,020
Number of Sequences: 37866
Number of extensions: 754901
Number of successful extensions: 6626
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 166
Number of HSP's that attempted gapping in prelim test: 5561
Number of HSP's gapped (non-prelim): 810
length of query: 329
length of database: 18,247,518
effective HSP length: 103
effective length of query: 226
effective length of database: 14,347,320
effective search space: 3242494320
effective search space used: 3242494320
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.