PAF1 27919

Name: PAF1	Sequence: fasta or formatted (531aa)		NCBI GI: 42476169
Description: Paf1, RNA polymerase II associated factor, homolog		Referenced in: RNA Polymerase and General Transcription Factors
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.2 38 3 C cysteine 0.6 3 1 D aspartate 9.4 50 2 E glutamate 13.7 73 7 F phenylalanine 3.2 17 2 G glycine 5.8 31 3 H histidine 2.1 11 1 I isoleucine 3.8 20 1 K lysine 6.6 35 2 L leucine 3.8 20 2 M methionine 2.3 12 2 N asparagine 3.6 19 1 P proline 4.9 26 1 Q glutamine 4.9 26 2 R arginine 5.8 31 2 S serine 10.2 54 3 T threonine 3.8 20 1 V valine 4.7 25 2 W tryptophan 0.6 3 1 Y tyrosine 3.2 17 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 Paf1, RNA polymerase II associated factor, homolog [... DSPP 0.050 dentin sialophosphoprotein preproprotein RPGR 0.050 retinitis pigmentosa GTPase regulator isoform C [Hom... CENPB 0.045 centromere protein B YTHDC1 0.043 splicing factor YT521-B isoform 1 NSBP1 0.043 nucleosomal binding protein 1 YTHDC1 0.041 splicing factor YT521-B isoform 2 SETD1A 0.039 SET domain containing 1A SPANXN2 0.038 SPANX-N2 protein UBTF 0.035 upstream binding transcription factor, RNA polymera... UBTF 0.035 upstream binding transcription factor, RNA polymera... UBTF 0.035 upstream binding transcription factor, RNA polymerase... IWS1 0.034 IWS1 homolog ACRC 0.034 ACRC protein LEO1 0.034 Leo1, Paf1/RNA polymerase II complex component, homo... DMP1 0.034 dentin matrix acidic phosphoprotein 1 isoform 1 precu... DMP1 0.034 dentin matrix acidic phosphoprotein 1 isoform 2 pre... PELP1 0.034 proline, glutamic acid and leucine rich protein 1 [... CDC2L2 0.033 cell division cycle 2-like 2 isoform 4 CDC2L2 0.033 cell division cycle 2-like 2 isoform 1 CDC2L1 0.033 cell division cycle 2-like 1 (PITSLRE proteins) isof... CDC2L1 0.033 cell division cycle 2-like 1 (PITSLRE proteins) isof... CDC2L1 0.033 cell division cycle 2-like 1 (PITSLRE proteins) isof... CDC2L1 0.033 cell division cycle 2-like 1 (PITSLRE proteins) isof... CDC2L1 0.033 cell division cycle 2-like 1 (PITSLRE proteins) isof... CDC2L1 0.033 cell division cycle 2-like 1 (PITSLRE proteins) isof... ANP32E 0.033 acidic (leucine-rich) nuclear phosphoprotein 32 fami... ANP32E 0.033 acidic (leucine-rich) nuclear phosphoprotein 32 fam... ANP32E 0.033 acidic (leucine-rich) nuclear phosphoprotein 32 fam... EIF5B 0.033 eukaryotic translation initiation factor 5B Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.