Guide to the Human Genome
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Name: PAF1 Sequence: fasta or formatted (531aa) NCBI GI: 42476169
Description:

Paf1, RNA polymerase II associated factor, homolog

Referenced in:

RNA Polymerase and General Transcription Factors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         38           3
 C cysteine            0.6          3           1
 D aspartate           9.4         50           2
 E glutamate          13.7         73           7
 F phenylalanine       3.2         17           2
 G glycine             5.8         31           3
 H histidine           2.1         11           1
 I isoleucine          3.8         20           1
 K lysine              6.6         35           2
 L leucine             3.8         20           2
 M methionine          2.3         12           2
 N asparagine          3.6         19           1
 P proline             4.9         26           1
 Q glutamine           4.9         26           2
 R arginine            5.8         31           2
 S serine             10.2         54           3
 T threonine           3.8         20           1
 V valine              4.7         25           2
 W tryptophan          0.6          3           1
 Y tyrosine            3.2         17           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Paf1, RNA polymerase II associated factor, homolog [... 
DSPP                  0.050   dentin sialophosphoprotein preproprotein 
RPGR                  0.050   retinitis pigmentosa GTPase regulator isoform C [Hom...
CENPB                 0.045   centromere protein B 
YTHDC1                0.043   splicing factor YT521-B isoform 1 
NSBP1                 0.043   nucleosomal binding protein 1 
YTHDC1                0.041   splicing factor YT521-B isoform 2 
SETD1A                0.039   SET domain containing 1A 
SPANXN2               0.038   SPANX-N2 protein 
UBTF                  0.035   upstream binding transcription factor, RNA polymera...
UBTF                  0.035   upstream binding transcription factor, RNA polymera...
UBTF                  0.035   upstream binding transcription factor, RNA polymerase...
IWS1                  0.034   IWS1 homolog 
ACRC                  0.034   ACRC protein 
LEO1                  0.034   Leo1, Paf1/RNA polymerase II complex component, homo...
DMP1                  0.034   dentin matrix acidic phosphoprotein 1 isoform 1 precu...
DMP1                  0.034   dentin matrix acidic phosphoprotein 1 isoform 2 pre...
PELP1                 0.034   proline, glutamic acid and leucine rich protein 1 [...
CDC2L2                0.033   cell division cycle 2-like 2 isoform 4 
CDC2L2                0.033   cell division cycle 2-like 2 isoform 1 
CDC2L1                0.033   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.033   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.033   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.033   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.033   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.033   cell division cycle 2-like 1 (PITSLRE proteins) isof...
ANP32E                0.033   acidic (leucine-rich) nuclear phosphoprotein 32 fami...
ANP32E                0.033   acidic (leucine-rich) nuclear phosphoprotein 32 fam...
ANP32E                0.033   acidic (leucine-rich) nuclear phosphoprotein 32 fam...
EIF5B                 0.033   eukaryotic translation initiation factor 5B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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