Guide to the Human Genome
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Name: SCML1 Sequence: fasta or formatted (208aa) NCBI GI: 82830430
Description:

sex comb on midleg-like 1 isoform c

Referenced in:

Additional Genes in Development

Other entries for this name:
alt prot [302aa] sex comb on midleg-like 1 isoform b
alt prot [329aa] sex comb on midleg-like 1 isoform a
alt mRNA [208aa] sex comb on midleg-like 1 isoform c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3         11           2
 C cysteine            2.9          6           1
 D aspartate           5.3         11           1
 E glutamate           7.7         16           2
 F phenylalanine       2.9          6           1
 G glycine             4.8         10           1
 H histidine           3.4          7           1
 I isoleucine          2.9          6           1
 K lysine              4.8         10           2
 L leucine            10.6         22           4
 M methionine          1.0          2           1
 N asparagine          4.3          9           2
 P proline             8.7         18           2
 Q glutamine           1.9          4           1
 R arginine            4.3          9           2
 S serine             12.0         25           3
 T threonine           5.8         12           1
 V valine              5.8         12           2
 W tryptophan          0.5          1           1
 Y tyrosine            5.3         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sex comb on midleg-like 1 isoform c 
SCML1                 1.000   sex comb on midleg-like 1 isoform a 
SCML1                 1.000   sex comb on midleg-like 1 isoform c 
SCML1                 1.000   sex comb on midleg-like 1 isoform b 
SCML2                 0.219   sex comb on midleg-like 2 
SCML4                 0.185   sex comb on midleg-like 4 
SCMH1                 0.175   sex comb on midleg 1 isoform 1 
SCMH1                 0.172   sex comb on midleg 1 isoform 2 
SFMBT1                0.103   Scm-like with four mbt domains 1 
SFMBT1                0.103   Scm-like with four mbt domains 1 
SFMBT1                0.103   Scm-like with four mbt domains 1 
SFMBT2                0.094   Scm-like with four mbt domains 2 
PHC1                  0.076   polyhomeotic 1-like 
PHC3                  0.074   polyhomeotic like 3 
PHC2                  0.059   polyhomeotic-like 2 isoform b 
PHC2                  0.059   polyhomeotic-like 2 isoform a 
SAMD13                0.039   sterile alpha motif domain containing 13 isoform 2 ...
SAMD13                0.039   sterile alpha motif domain containing 13 isoform 2 ...
SAMD13                0.039   sterile alpha motif domain containing 13 isoform 1 [...
SAMD11                0.034   sterile alpha motif domain containing 11 
L3MBTL4               0.032   l(3)mbt-like 4 
SAMD7                 0.032   sterile alpha motif domain containing 7 
SAMD1                 0.030   sterile alpha motif domain containing 1 
LOC100131001          0.025   PREDICTED: hypothetical protein 
L3MBTL3               0.025   l(3)mbt-like 3 isoform b 
L3MBTL3               0.025   l(3)mbt-like 3 isoform a 
RICS                  0.025   Rho GTPase-activating protein isoform 1 
RICS                  0.025   Rho GTPase-activating protein isoform 2 
LOC392555             0.022   PREDICTED: similar to melanoma antigen family C, 2 ...
LOC392555             0.022   PREDICTED: similar to melanoma antigen family C, 2 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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