Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 7019349
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7019349 gremlin-1 precursor [Homo sapiens]
(184 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7019349 gremlin-1 precursor [Homo sapiens] 385 e-107
gi|71164892 gremlin 2 precursor [Homo sapiens] 195 2e-50
gi|4885135 cerberus 1 [Homo sapiens] 71 5e-13
gi|4885509 neuroblastoma, suppression of tumorigenicity 1 2 prec... 63 2e-10
gi|115387106 neuroblastoma, suppression of tumorigenicity 1 1 [H... 63 2e-10
gi|116284392 mucin 2 precursor [Homo sapiens] 45 3e-05
gi|239749951 PREDICTED: similar to mucin 2 [Homo sapiens] 45 3e-05
gi|22749329 dante precursor [Homo sapiens] 42 3e-04
gi|21536320 heterogeneous nuclear ribonucleoprotein U-like 1 iso... 32 0.31
gi|21536326 heterogeneous nuclear ribonucleoprotein U-like 1 iso... 32 0.31
gi|205361109 multiple C2 domains, transmembrane 1 isoform L [Hom... 32 0.31
gi|61102725 la related protein isoform 2 [Homo sapiens] 32 0.40
gi|39725634 la related protein isoform 1 [Homo sapiens] 32 0.40
gi|151301154 mucin 6, gastric [Homo sapiens] 31 0.69
gi|31652264 RNA binding motif protein 26 [Homo sapiens] 31 0.69
gi|160707950 methyl CpG binding protein 2 isoform 2 [Homo sapiens] 30 0.90
gi|4826830 methyl CpG binding protein 2 isoform 1 [Homo sapiens] 30 0.90
gi|150418007 RAN binding protein 2 [Homo sapiens] 30 0.90
gi|239754655 PREDICTED: hypothetical protein [Homo sapiens] 30 0.90
gi|239749201 PREDICTED: hypothetical protein XP_002346947 [Homo ... 30 0.90
gi|239743281 PREDICTED: hypothetical protein XP_002342784 [Homo ... 30 0.90
gi|239508964 PREDICTED: similar to FLJ00248 protein [Homo sapiens] 30 0.90
gi|17402900 far upstream element-binding protein [Homo sapiens] 30 0.90
gi|122114658 hypothetical protein LOC23053 [Homo sapiens] 30 0.90
gi|40804468 calcium channel, voltage-dependent, beta 1 subunit i... 30 1.2
gi|33383235 minichromosome maintenance complex component 10 isof... 30 1.5
gi|170016061 spectrin, beta, non-erythrocytic 5 [Homo sapiens] 30 1.5
gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sap... 29 2.0
gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sap... 29 2.0
gi|119395716 forkhead box C1 [Homo sapiens] 29 2.0
>gi|7019349 gremlin-1 precursor [Homo sapiens]
Length = 184
Score = 385 bits (989), Expect = e-107
Identities = 184/184 (100%), Positives = 184/184 (100%)
Query: 1 MSRTAYTVGALLLLLGTLLPAAEGKKKGSQGAIPPPDKAQHNDSEQTQSPQQPGSRNRGR 60
MSRTAYTVGALLLLLGTLLPAAEGKKKGSQGAIPPPDKAQHNDSEQTQSPQQPGSRNRGR
Sbjct: 1 MSRTAYTVGALLLLLGTLLPAAEGKKKGSQGAIPPPDKAQHNDSEQTQSPQQPGSRNRGR 60
Query: 61 GQGRGTAMPGEEVLESSQEALHVTERKYLKRDWCKTQPLKQTIHEEGCNSRTIINRFCYG 120
GQGRGTAMPGEEVLESSQEALHVTERKYLKRDWCKTQPLKQTIHEEGCNSRTIINRFCYG
Sbjct: 61 GQGRGTAMPGEEVLESSQEALHVTERKYLKRDWCKTQPLKQTIHEEGCNSRTIINRFCYG 120
Query: 121 QCNSFYIPRHIRKEEGSFQSCSFCKPKKFTTMMVTLNCPELQPPTKKKRVTRVKQCRCIS 180
QCNSFYIPRHIRKEEGSFQSCSFCKPKKFTTMMVTLNCPELQPPTKKKRVTRVKQCRCIS
Sbjct: 121 QCNSFYIPRHIRKEEGSFQSCSFCKPKKFTTMMVTLNCPELQPPTKKKRVTRVKQCRCIS 180
Query: 181 IDLD 184
IDLD
Sbjct: 181 IDLD 184
>gi|71164892 gremlin 2 precursor [Homo sapiens]
Length = 168
Score = 195 bits (495), Expect = 2e-50
Identities = 96/173 (55%), Positives = 120/173 (69%), Gaps = 20/173 (11%)
Query: 12 LLLLGTLLPAAEGKKKGSQGAIPPPDK-AQHNDSEQTQSPQQPGSRNRGRGQGRGTAMPG 70
L L+ L+ AE +K GAIP P K N+SE+ Q +
Sbjct: 9 LFLVAVLVKVAEARKNRPAGAIPSPYKDGSSNNSERWQHQIK------------------ 50
Query: 71 EEVLESSQEALHVTERKYLKRDWCKTQPLKQTIHEEGCNSRTIINRFCYGQCNSFYIPRH 130
EVL SSQEAL VTERKYLK DWCKTQPL+QT+ EEGC SRTI+NRFCYGQCNSFYIPRH
Sbjct: 51 -EVLASSQEALVVTERKYLKSDWCKTQPLRQTVSEEGCRSRTILNRFCYGQCNSFYIPRH 109
Query: 131 IRKEEGSFQSCSFCKPKKFTTMMVTLNCPELQPPTKKKRVTRVKQCRCISIDL 183
++KEE SFQSC+FCKP++ T+++V L CP L PP + K++ +VKQCRC+S++L
Sbjct: 110 VKKEEESFQSCAFCKPQRVTSVLVELECPGLDPPFRLKKIQKVKQCRCMSVNL 162
>gi|4885135 cerberus 1 [Homo sapiens]
Length = 267
Score = 71.2 bits (173), Expect = 5e-13
Identities = 36/85 (42%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 94 CKTQPLKQTIHEEGCNSRTIINRFCYGQCNSFYIPRHIRKEEGSFQSCSFCKPKKFTTMM 153
C+T P QTI EGC + N C+G+C S + P + S SCS C P KFTTM
Sbjct: 162 CRTVPFSQTITHEGCEKVVVQNNLCFGKCGSVHFP---GAAQHSHTSCSHCLPAKFTTMH 218
Query: 154 VTLNCPELQPPTKKKRVTRVKQCRC 178
+ LNC EL K V V++C+C
Sbjct: 219 LPLNCTELSSVIKV--VMLVEECQC 241
>gi|4885509 neuroblastoma, suppression of tumorigenicity 1 2
precursor [Homo sapiens]
Length = 180
Score = 62.8 bits (151), Expect = 2e-10
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 90 KRDWCKTQPLKQTIHEEGCNSRTIINRFCYGQCNSFYIPRHIRKEEGSFQSCSFCKPKKF 149
K WC+ + + Q + GC +++I NR C GQC S+ +P + S C C P +
Sbjct: 30 KSAWCEAKNITQIVGHSGCEAKSIQNRACLGQCFSYSVPNTFPQSTESLVHCDSCMPAQS 89
Query: 150 TTMMVTLNCP-ELQPPTKKKRVTRVKQCRC 178
+VTL CP + P K V ++ C C
Sbjct: 90 MWEIVTLECPGHEEVPRVDKLVEKILHCSC 119
>gi|115387106 neuroblastoma, suppression of tumorigenicity 1 1 [Homo
sapiens]
Length = 216
Score = 62.8 bits (151), Expect = 2e-10
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 90 KRDWCKTQPLKQTIHEEGCNSRTIINRFCYGQCNSFYIPRHIRKEEGSFQSCSFCKPKKF 149
K WC+ + + Q + GC +++I NR C GQC S+ +P + S C C P +
Sbjct: 66 KSAWCEAKNITQIVGHSGCEAKSIQNRACLGQCFSYSVPNTFPQSTESLVHCDSCMPAQS 125
Query: 150 TTMMVTLNCP-ELQPPTKKKRVTRVKQCRC 178
+VTL CP + P K V ++ C C
Sbjct: 126 MWEIVTLECPGHEEVPRVDKLVEKILHCSC 155
>gi|116284392 mucin 2 precursor [Homo sapiens]
Length = 5179
Score = 45.4 bits (106), Expect = 3e-05
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 94 CKTQPLKQTIHEEGCNSRTIINRFCYGQCNSFYIPRHIRKEEGSFQSCSFCKPKKFTTMM 153
C T P+ + GC ++T++ C G C +F + + K + SCS CK +K +
Sbjct: 5075 CSTVPVTTEVSYAGC-TKTVLMNHCSGSCGTFVM--YSAKAQALDHSCSCCKEEKTSQRE 5131
Query: 154 VTLNCPELQPPTKKKRVTRVKQCRC 178
V L+CP T T ++ C+C
Sbjct: 5132 VVLSCPNGGSLT--HTYTHIESCQC 5154
>gi|239749951 PREDICTED: similar to mucin 2 [Homo sapiens]
Length = 2639
Score = 45.4 bits (106), Expect = 3e-05
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 94 CKTQPLKQTIHEEGCNSRTIINRFCYGQCNSFYIPRHIRKEEGSFQSCSFCKPKKFTTMM 153
C T P+ + GC ++T++ C G C +F + + K + SCS CK +K +
Sbjct: 2535 CSTVPVTTEVSYAGC-TKTVLMNHCSGSCGTFVM--YSAKAQALDHSCSCCKEEKTSQRE 2591
Query: 154 VTLNCPELQPPTKKKRVTRVKQCRC 178
V L+CP T T ++ C+C
Sbjct: 2592 VVLSCPNGGSLT--HTYTHIESCQC 2614
>gi|22749329 dante precursor [Homo sapiens]
Length = 189
Score = 42.0 bits (97), Expect = 3e-04
Identities = 40/168 (23%), Positives = 61/168 (36%), Gaps = 28/168 (16%)
Query: 8 VGALLLLLGTLLPAAEGKKKGSQ-----------------GAIPPPDKAQHNDSEQTQSP 50
+ LL LL LP G+ + GA+PP A S +
Sbjct: 6 LSTLLCLLSGALPTGSGRPEPQSPRPQSWAAANQTWALGPGALPPLVPASALGSWKAFLG 65
Query: 51 QQPGSRNRGRGQGRGTAMPGEEVLESSQEALHVTERKYLKRDWCKTQPLKQTIHEEGCNS 110
Q + R G G G++ + + L+ E + + CK P Q GC++
Sbjct: 66 LQ-----KARQLGMGRLQRGQDEVAAVTLPLNPQE---VIQGMCKAVPFVQVFSRPGCSA 117
Query: 111 RTIINRFCYGQCNSFYIPRHIRKEEGSFQSCSFCKPKKFTTMMVTLNC 158
+ N C+G C+S YIP + C+ C P + V L C
Sbjct: 118 IRLRNHLCFGHCSSLYIP---GSDPTPLVLCNSCMPARKRWAPVVLWC 162
>gi|21536320 heterogeneous nuclear ribonucleoprotein U-like 1
isoform d [Homo sapiens]
Length = 756
Score = 32.0 bits (71), Expect = 0.31
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 9/56 (16%)
Query: 26 KKGSQGAIPPPDKAQHN-DSEQTQSPQQPGSRNRGRG--------QGRGTAMPGEE 72
K+G+ + PP+ +Q D +Q QS ++P NRGRG +GR P EE
Sbjct: 46 KQGAPTSFLPPEASQLKPDRQQFQSRKRPYEENRGRGYFEHREDRRGRSPQPPAEE 101
>gi|21536326 heterogeneous nuclear ribonucleoprotein U-like 1
isoform a [Homo sapiens]
Length = 856
Score = 32.0 bits (71), Expect = 0.31
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 9/56 (16%)
Query: 26 KKGSQGAIPPPDKAQHN-DSEQTQSPQQPGSRNRGRG--------QGRGTAMPGEE 72
K+G+ + PP+ +Q D +Q QS ++P NRGRG +GR P EE
Sbjct: 146 KQGAPTSFLPPEASQLKPDRQQFQSRKRPYEENRGRGYFEHREDRRGRSPQPPAEE 201
>gi|205361109 multiple C2 domains, transmembrane 1 isoform L [Homo
sapiens]
Length = 999
Score = 32.0 bits (71), Expect = 0.31
Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 9/73 (12%)
Query: 18 LLPAAEGKK--KGSQGAIPP----PDKAQHNDSEQTQ---SPQQPGSRNRGRGQGRGTAM 68
LLPA +G G+ G PP PD A + S + SPQ P +R R +G
Sbjct: 129 LLPAVKGPAAASGAAGGTPPGGRSPDSAPSSSSASSSLSSSPQPPPRGDRARDEGARRQG 188
Query: 69 PGEEVLESSQEAL 81
PG + +L
Sbjct: 189 PGAHLCHQKSSSL 201
>gi|61102725 la related protein isoform 2 [Homo sapiens]
Length = 1096
Score = 31.6 bits (70), Expect = 0.40
Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 24/75 (32%)
Query: 19 LPAAEGKKKGSQGAI-----PP---------PDKAQHNDSEQTQSPQQPGS--------- 55
+PA G+ KGS+ A PP P+ A H D ++T S + G+
Sbjct: 281 IPANRGEIKGSESATYVPVAPPTPAWQPEIKPEPAWH-DQDETSSVKSDGAGGARASFRG 339
Query: 56 RNRGRGQGRGTAMPG 70
R RGRG+GRG G
Sbjct: 340 RGRGRGRGRGRGRGG 354
>gi|39725634 la related protein isoform 1 [Homo sapiens]
Length = 1019
Score = 31.6 bits (70), Expect = 0.40
Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 24/75 (32%)
Query: 19 LPAAEGKKKGSQGAI-----PP---------PDKAQHNDSEQTQSPQQPGS--------- 55
+PA G+ KGS+ A PP P+ A H D ++T S + G+
Sbjct: 204 IPANRGEIKGSESATYVPVAPPTPAWQPEIKPEPAWH-DQDETSSVKSDGAGGARASFRG 262
Query: 56 RNRGRGQGRGTAMPG 70
R RGRG+GRG G
Sbjct: 263 RGRGRGRGRGRGRGG 277
>gi|151301154 mucin 6, gastric [Homo sapiens]
Length = 2439
Score = 30.8 bits (68), Expect = 0.69
Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 5/90 (5%)
Query: 94 CKTQPLKQTIHEEGCNSRTIINRFCYGQCNSFYIPRHIRKEEGSFQSCSFCKPKKFTTMM 153
C + ++ I +GC + + R C G C S I ++ + CS C+P
Sbjct: 2349 CSVREQQEEITFKGCMANVTVTR-CEGACISAASFNIITQQVDA--RCSCCRPLHSYEQQ 2405
Query: 154 VTLNCPELQPPTKKKRVTR--VKQCRCISI 181
+ L CP+ P ++ +T C C S+
Sbjct: 2406 LELPCPDPSTPGRRLVLTLQVFSHCVCSSV 2435
>gi|31652264 RNA binding motif protein 26 [Homo sapiens]
Length = 980
Score = 30.8 bits (68), Expect = 0.69
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 58 RGRGQGRGTAMPGEEVLESSQEALHVT 84
RGRG+GRG +PG V++ AL ++
Sbjct: 843 RGRGRGRGRGVPGHAVVDHRPRALEIS 869
>gi|160707950 methyl CpG binding protein 2 isoform 2 [Homo sapiens]
Length = 498
Score = 30.4 bits (67), Expect = 0.90
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 36 PDKAQHNDSEQTQSPQQPGS-RNRGRGQGRGTAMPGEEVLESSQ 78
P + + ++ +SP+ PG+ R RGR +G GT P E Q
Sbjct: 177 PSRREQKPPKKPKSPKAPGTGRGRGRPKGSGTTRPKAATSEGVQ 220
>gi|4826830 methyl CpG binding protein 2 isoform 1 [Homo sapiens]
Length = 486
Score = 30.4 bits (67), Expect = 0.90
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 36 PDKAQHNDSEQTQSPQQPGS-RNRGRGQGRGTAMPGEEVLESSQ 78
P + + ++ +SP+ PG+ R RGR +G GT P E Q
Sbjct: 165 PSRREQKPPKKPKSPKAPGTGRGRGRPKGSGTTRPKAATSEGVQ 208
>gi|150418007 RAN binding protein 2 [Homo sapiens]
Length = 3224
Score = 30.4 bits (67), Expect = 0.90
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 118 CYGQCNSFYIPRHIRKEEGSFQSCSFCKPKKFTTMMVTLNCPELQPPTKK 167
C + + K+EGS+ C+ C K +T ++C L P K+
Sbjct: 1335 CKSDAGNLNFEFQVAKKEGSWWHCNSCSLKNASTAKKCVSCQNLNPSNKE 1384
>gi|239754655 PREDICTED: hypothetical protein [Homo sapiens]
Length = 76
Score = 30.4 bits (67), Expect = 0.90
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 4 TAYTVGALLLLLGTLLPAAEGKKKGSQGAIPPPDKAQHNDSEQTQSP 50
TA+ G L+ L LL ++G+ + S A+ PPD S T P
Sbjct: 30 TAWLSGPELIALTGLLQMSQGEPRPSSSAVGPPDHTSDPPSPYTHCP 76
>gi|239749201 PREDICTED: hypothetical protein XP_002346947 [Homo
sapiens]
Length = 76
Score = 30.4 bits (67), Expect = 0.90
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 4 TAYTVGALLLLLGTLLPAAEGKKKGSQGAIPPPDKAQHNDSEQTQSP 50
TA+ G L+ L LL ++G+ + S A+ PPD S T P
Sbjct: 30 TAWLSGPELIALTGLLQMSQGEPRPSSSAVGPPDHTSDPPSPYTHCP 76
>gi|239743281 PREDICTED: hypothetical protein XP_002342784 [Homo
sapiens]
Length = 76
Score = 30.4 bits (67), Expect = 0.90
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 4 TAYTVGALLLLLGTLLPAAEGKKKGSQGAIPPPDKAQHNDSEQTQSP 50
TA+ G L+ L LL ++G+ + S A+ PPD S T P
Sbjct: 30 TAWLSGPELIALTGLLQMSQGEPRPSSSAVGPPDHTSDPPSPYTHCP 76
>gi|239508964 PREDICTED: similar to FLJ00248 protein [Homo
sapiens]
Length = 76
Score = 30.4 bits (67), Expect = 0.90
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 4 TAYTVGALLLLLGTLLPAAEGKKKGSQGAIPPPDKAQHNDSEQTQSP 50
TA+ G L+ L LL ++G+ + S A+ PPD S T P
Sbjct: 30 TAWLSGPELIALTGLLQMSQGEPRPSSSAVGPPDHTSDPPSPYTHCP 76
>gi|17402900 far upstream element-binding protein [Homo sapiens]
Length = 644
Score = 30.4 bits (67), Expect = 0.90
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 8/39 (20%)
Query: 35 PPDKAQHND--------SEQTQSPQQPGSRNRGRGQGRG 65
PPD+ QH S Q +P PG RGRG+G+G
Sbjct: 328 PPDRCQHAAEIITDLLRSVQAGNPGGPGPGGRGRGRGQG 366
>gi|122114658 hypothetical protein LOC23053 [Homo sapiens]
Length = 1842
Score = 30.4 bits (67), Expect = 0.90
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 11 LLLLLGTLLPAAEGKKKGSQGAIPPPDKAQHNDSEQTQSPQQPGSRNRGRGQGRGTAMPG 70
L L LP+ G + S G D+ + +E P++PG++ +G G+G ++ G
Sbjct: 504 LALCWARALPSRPGASR-SGGLEESRDRPRPLPTEPAVRPKEPGTKRKGLGEGVPSSQRG 562
Query: 71 EEVL--ESSQEALH 82
L E +ALH
Sbjct: 563 PRRLSAEGGDKALH 576
>gi|40804468 calcium channel, voltage-dependent, beta 1 subunit
isoform 1 [Homo sapiens]
Length = 598
Score = 30.0 bits (66), Expect = 1.2
Identities = 16/51 (31%), Positives = 23/51 (45%)
Query: 31 GAIPPPDKAQHNDSEQTQSPQQPGSRNRGRGQGRGTAMPGEEVLESSQEAL 81
G PP + D E+ + +RNRGR + R A G VL ++ L
Sbjct: 538 GGTPPARQGSWEDEEEDYEEELTDNRNRGRNKARYCAEGGGPVLGRNKNEL 588
>gi|33383235 minichromosome maintenance complex component 10 isoform
2 [Homo sapiens]
Length = 874
Score = 29.6 bits (65), Expect = 1.5
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 8/45 (17%)
Query: 148 KFTTMMVTLNCPELQ--------PPTKKKRVTRVKQCRCISIDLD 184
K TT+ T + LQ PP K++RV R+++ C S +LD
Sbjct: 134 KVTTIKQTASPARLQKSPEKSPRPPLKERRVQRIQESTCFSAELD 178
>gi|170016061 spectrin, beta, non-erythrocytic 5 [Homo sapiens]
Length = 3639
Score = 29.6 bits (65), Expect = 1.5
Identities = 18/51 (35%), Positives = 24/51 (47%)
Query: 14 LLGTLLPAAEGKKKGSQGAIPPPDKAQHNDSEQTQSPQQPGSRNRGRGQGR 64
LL TL P AE + + + A H EQ QS Q +R +GR + R
Sbjct: 1221 LLSTLGPRAEALRAHGEKLVQSQHPAAHTVREQLQSIQAQWTRLQGRSEQR 1271
>gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sapiens]
Length = 2462
Score = 29.3 bits (64), Expect = 2.0
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 27 KGSQGAIPPPDKAQHNDSEQTQSPQQPGSRNRGRGQGRGTAMPGEEVLE 75
K + A PPP Q ++ +PQQPGS RG+ R A P ++ E
Sbjct: 976 KPAPPAPPPPQNLQ----PESDAPQQPGSSPRGK--SRSPAPPADKEAE 1018
>gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sapiens]
Length = 2524
Score = 29.3 bits (64), Expect = 2.0
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 27 KGSQGAIPPPDKAQHNDSEQTQSPQQPGSRNRGRGQGRGTAMPGEEVLE 75
K + A PPP Q ++ +PQQPGS RG+ R A P ++ E
Sbjct: 992 KPAPPAPPPPQNLQ----PESDAPQQPGSSPRGK--SRSPAPPADKEAE 1034
>gi|119395716 forkhead box C1 [Homo sapiens]
Length = 553
Score = 29.3 bits (64), Expect = 2.0
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 22 AEGKKKGSQGAIPPPDKAQHNDSEQ--TQSPQQPGSRNRGRGQGRGTAMPGEEVLESSQE 79
A+G G Q PPP + Q +E SP QP S G G A+P E +SS
Sbjct: 209 ADGNAPGPQ---PPPVRIQDIKTENGTCPSPPQPLSPAAALGSGSAAAVPKIESPDSSSS 265
Query: 80 AL 81
+L
Sbjct: 266 SL 267
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.132 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,370,848
Number of Sequences: 37866
Number of extensions: 414237
Number of successful extensions: 2204
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 2115
Number of HSP's gapped (non-prelim): 144
length of query: 184
length of database: 18,247,518
effective HSP length: 96
effective length of query: 88
effective length of database: 14,612,382
effective search space: 1285889616
effective search space used: 1285889616
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.