Guide to the Human Genome
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Name: LOC100289367 Sequence: fasta or formatted (76aa) NCBI GI: 239743281
Description:

PREDICTED: hypothetical protein XP_002342784

Not currently referenced in the text

Other entries for this name:
alt mRNA {76aa} PREDICTED: similar to FLJ00248 protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3          4           1
 C cysteine            1.3          1           1
 D aspartate           2.6          2           1
 E glutamate           2.6          2           1
 F phenylalanine       0.0          0           0
 G glycine             7.9          6           1
 H histidine           2.6          2           1
 I isoleucine          2.6          2           1
 K lysine              1.3          1           1
 L leucine            11.8          9           2
 M methionine          5.3          4           2
 N asparagine          0.0          0           0
 P proline            22.4         17           4
 Q glutamine           2.6          2           1
 R arginine            5.3          4           1
 S serine             15.8         12           3
 T threonine           5.3          4           1
 V valine              2.6          2           1
 W tryptophan          1.3          1           1
 Y tyrosine            1.3          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342784 
LOC100293864          1.000   PREDICTED: hypothetical protein 
LOC100290658          1.000   PREDICTED: hypothetical protein XP_002346947 
LOC100289367          1.000   PREDICTED: similar to FLJ00248 protein 
SCARF2                0.073   scavenger receptor class F, member 2 isoform 1 [Homo...
SCARF2                0.073   scavenger receptor class F, member 2 isoform 2 [Homo...
LRP10                 0.066   low density lipoprotein receptor-related protein 10 ...
WASL                  0.058   Wiskott-Aldrich syndrome gene-like protein 
SETD1B                0.051   SET domain containing 1B 
RANBP9                0.051   RAN binding protein 9 
LOC100132891          0.051   PREDICTED: hypothetical protein 
LOC100132891          0.051   PREDICTED: hypothetical protein 
LOC100132891          0.051   PREDICTED: hypothetical protein 
KIAA0913              0.051   hypothetical protein LOC23053 
SRCAP                 0.051   Snf2-related CBP activator protein 
FLJ22184              0.044   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.044   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.044   PREDICTED: hypothetical protein LOC80164 
FBLIM1                0.044   filamin-binding LIM protein-1 isoform b 
FBLIM1                0.044   filamin-binding LIM protein-1 isoform a 
PLK3                  0.044   polo-like kinase 3 
DMRT3                 0.044   doublesex and mab-3 related transcription factor 3 [...
CIC                   0.044   capicua homolog 
FCHSD1                0.044   FCH and double SH3 domains 1 
MBD6                  0.044   methyl-CpG binding domain protein 6 
FMN1                  0.044   formin 1 
ZNF358                0.044   zinc finger protein 358 
SMARCA4               0.036   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.036   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.036   SWI/SNF-related matrix-associated actin-dependent r...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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