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Search of human proteins with 6912438
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|6912438 integrin beta 1 binding protein 2 [Homo sapiens]
(347 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|6912438 integrin beta 1 binding protein 2 [Homo sapiens] 734 0.0
gi|221316566 cysteine and histidine-rich domain-containing prote... 302 3e-82
gi|221316570 cysteine and histidine-rich domain-containing prote... 258 4e-69
gi|195963398 suppressor of G2 allele of SKP1 isoform a [Homo sap... 41 0.002
gi|5730041 suppressor of G2 allele of SKP1 isoform b [Homo sapiens] 41 0.002
gi|45331217 zinc finger protein 526 [Homo sapiens] 36 0.045
gi|44771211 mediator complex subunit 13-like [Homo sapiens] 35 0.099
gi|84875541 cytochrome b5 reductase 4 [Homo sapiens] 34 0.17
gi|181336739 multiple EGF-like-domains 11 [Homo sapiens] 33 0.29
gi|187960109 RNA binding motif protein 28 [Homo sapiens] 33 0.38
gi|41406057 amyloid beta A4 protein isoform c precursor [Homo sa... 33 0.49
gi|41406055 amyloid beta A4 protein isoform b precursor [Homo sa... 33 0.49
gi|4502167 amyloid beta A4 protein isoform a precursor [Homo sap... 33 0.49
gi|209915570 amyloid beta A4 protein isoform e precursor [Homo s... 33 0.49
gi|209915573 amyloid beta A4 protein isoform f precursor [Homo s... 33 0.49
gi|156142199 euchromatic histone-lysine N-methyltransferase 2 is... 33 0.49
gi|156142197 euchromatic histone-lysine N-methyltransferase 2 is... 33 0.49
gi|57529246 ubiquitin thioesterase 19 [Homo sapiens] 33 0.49
gi|122937335 F-box protein 46 [Homo sapiens] 33 0.49
gi|55956788 nucleolin [Homo sapiens] 32 0.84
gi|218505694 potassium channel tetramerisation domain containing... 32 0.84
gi|24371268 nucleosome assembly protein 1-like 5 [Homo sapiens] 32 0.84
gi|48928019 Nedd4 binding protein 1 [Homo sapiens] 32 1.1
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 32 1.1
gi|100816397 MYST histone acetyltransferase (monocytic leukemia)... 32 1.1
gi|4503257 death-domain associated protein isoform a [Homo sapiens] 31 1.4
gi|215422388 death-domain associated protein isoform a [Homo sap... 31 1.4
gi|215422366 death-domain associated protein isoform b [Homo sap... 31 1.4
gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens] 31 1.4
gi|24497618 ATPase family, AAA domain containing 2 [Homo sapiens] 31 1.9
>gi|6912438 integrin beta 1 binding protein 2 [Homo sapiens]
Length = 347
Score = 734 bits (1896), Expect = 0.0
Identities = 347/347 (100%), Positives = 347/347 (100%)
Query: 1 MSLLCRNKGCGQHFDPNTNLPDSCCHHPGVPIFHDALKGWSCCRKRTVDFSEFLNIKGCT 60
MSLLCRNKGCGQHFDPNTNLPDSCCHHPGVPIFHDALKGWSCCRKRTVDFSEFLNIKGCT
Sbjct: 1 MSLLCRNKGCGQHFDPNTNLPDSCCHHPGVPIFHDALKGWSCCRKRTVDFSEFLNIKGCT 60
Query: 61 MGPHCAEKLPEAPQPEGPATSSSLQEQKPLNVIPKSAETLRRERPKSELPLKLLPLNISQ 120
MGPHCAEKLPEAPQPEGPATSSSLQEQKPLNVIPKSAETLRRERPKSELPLKLLPLNISQ
Sbjct: 61 MGPHCAEKLPEAPQPEGPATSSSLQEQKPLNVIPKSAETLRRERPKSELPLKLLPLNISQ 120
Query: 121 ALEMALEQKELDQEPGAGLDSLIRTGSSCQNPGCDAVYQGPESDATPCTYHPGAPRFHEG 180
ALEMALEQKELDQEPGAGLDSLIRTGSSCQNPGCDAVYQGPESDATPCTYHPGAPRFHEG
Sbjct: 121 ALEMALEQKELDQEPGAGLDSLIRTGSSCQNPGCDAVYQGPESDATPCTYHPGAPRFHEG 180
Query: 181 MKSWSCCGIQTLDFGAFLAQPGCRVGRHDWGKQLPASCRHDWHQTDSLVVVTVYGQIPLP 240
MKSWSCCGIQTLDFGAFLAQPGCRVGRHDWGKQLPASCRHDWHQTDSLVVVTVYGQIPLP
Sbjct: 181 MKSWSCCGIQTLDFGAFLAQPGCRVGRHDWGKQLPASCRHDWHQTDSLVVVTVYGQIPLP 240
Query: 241 AFNWVKASQTELHVHIVFDGNRVFQAQMKLWGVINVEQSSVFLMPSRVEISLVKADPGSW 300
AFNWVKASQTELHVHIVFDGNRVFQAQMKLWGVINVEQSSVFLMPSRVEISLVKADPGSW
Sbjct: 241 AFNWVKASQTELHVHIVFDGNRVFQAQMKLWGVINVEQSSVFLMPSRVEISLVKADPGSW 300
Query: 301 AQLEHPDALAKKARAGVVLEMDEEESDDSDDDLSWTEEEEEEEAMGE 347
AQLEHPDALAKKARAGVVLEMDEEESDDSDDDLSWTEEEEEEEAMGE
Sbjct: 301 AQLEHPDALAKKARAGVVLEMDEEESDDSDDDLSWTEEEEEEEAMGE 347
>gi|221316566 cysteine and histidine-rich domain-containing protein
1 isoform a [Homo sapiens]
Length = 332
Score = 302 bits (774), Expect = 3e-82
Identities = 154/322 (47%), Positives = 204/322 (63%), Gaps = 16/322 (4%)
Query: 1 MSLLCRNKGCGQHFDPNTNLPDSCCHHPGVPIFHDALKGWSCCRKRTVDFSEFLNIKGCT 60
M+LLC N+GCGQ FDP TN D+C +HPGVP+FHDALKGWSCC++RT DFS+FL+I GCT
Sbjct: 1 MALLCYNRGCGQRFDPETNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIVGCT 60
Query: 61 MGPHCAEKLPEAPQPEGPAT-SSSLQEQKP-----LNVIPKSAETLRRERPKSELPLKLL 114
G H +EK PE +PE T L E KP + PK E ++ RP + P+ L
Sbjct: 61 KGRHNSEKPPEPVKPEVKTTEKKELCELKPKFQEHIIQAPKPVEAIK--RPSPDEPMTNL 118
Query: 115 PLNISQALEMALEQKEL----DQEPGAGLDSLIRTGSSCQNPGCDAVYQGPESDATPCTY 170
L IS +L+ AL++ +L ++ + I+ G+SC+N GC YQG ES C Y
Sbjct: 119 ELKISASLKQALDKLKLSSGNEENKKEEDNDEIKIGTSCKNGGCSKTYQGLESLEEVCVY 178
Query: 171 HPGAPRFHEGMKSWSCCGIQTLDFGAFLAQPGCRVGRHDWGK----QLPASCRHDWHQTD 226
H G P FHEGMK WSCC +T DF FLAQ GC G+H W K + CRHDWHQT
Sbjct: 179 HSGVPIFHEGMKYWSCCRRKTSDFNTFLAQEGCTKGKHMWTKKDAGKKVVPCRHDWHQTG 238
Query: 227 SLVVVTVYGQIPLPAFNWVKASQTELHVHIVFDGNRVFQAQMKLWGVINVEQSSVFLMPS 286
V ++VY + LP + V+A+ T L+VHIVF+G + F +KLWGVI+V++S V + +
Sbjct: 239 GEVTISVYAKNSLPELSRVEANSTLLNVHIVFEGEKEFDQNVKLWGVIDVKRSYVTMTAT 298
Query: 287 RVEISLVKADPGSWAQLEHPDA 308
++EI++ KA+P WA LE P A
Sbjct: 299 KIEITMRKAEPMQWASLELPAA 320
>gi|221316570 cysteine and histidine-rich domain-containing protein
1 isoform b [Homo sapiens]
Length = 313
Score = 258 bits (660), Expect = 4e-69
Identities = 141/322 (43%), Positives = 187/322 (58%), Gaps = 35/322 (10%)
Query: 1 MSLLCRNKGCGQHFDPNTNLPDSCCHHPGVPIFHDALKGWSCCRKRTVDFSEFLNIKGCT 60
M+LLC N+GCGQ FDP TN D+C +HPGVP+FHDALKG CT
Sbjct: 1 MALLCYNRGCGQRFDPETNSDDACTYHPGVPVFHDALKG-------------------CT 41
Query: 61 MGPHCAEKLPEAPQPEGPATSSS-LQEQKP-----LNVIPKSAETLRRERPKSELPLKLL 114
G H +EK PE +PE T L E KP + PK E ++R P + P+ L
Sbjct: 42 KGRHNSEKPPEPVKPEVKTTEKKELCELKPKFQEHIIQAPKPVEAIKR--PSPDEPMTNL 99
Query: 115 PLNISQALEMALEQKEL----DQEPGAGLDSLIRTGSSCQNPGCDAVYQGPESDATPCTY 170
L IS +L+ AL++ +L ++ + I+ G+SC+N GC YQG ES C Y
Sbjct: 100 ELKISASLKQALDKLKLSSGNEENKKEEDNDEIKIGTSCKNGGCSKTYQGLESLEEVCVY 159
Query: 171 HPGAPRFHEGMKSWSCCGIQTLDFGAFLAQPGCRVGRHDWGKQLPAS----CRHDWHQTD 226
H G P FHEGMK WSCC +T DF FLAQ GC G+H W K+ CRHDWHQT
Sbjct: 160 HSGVPIFHEGMKYWSCCRRKTSDFNTFLAQEGCTKGKHMWTKKDAGKKVVPCRHDWHQTG 219
Query: 227 SLVVVTVYGQIPLPAFNWVKASQTELHVHIVFDGNRVFQAQMKLWGVINVEQSSVFLMPS 286
V ++VY + LP + V+A+ T L+VHIVF+G + F +KLWGVI+V++S V + +
Sbjct: 220 GEVTISVYAKNSLPELSRVEANSTLLNVHIVFEGEKEFDQNVKLWGVIDVKRSYVTMTAT 279
Query: 287 RVEISLVKADPGSWAQLEHPDA 308
++EI++ KA+P WA LE P A
Sbjct: 280 KIEITMRKAEPMQWASLELPAA 301
>gi|195963398 suppressor of G2 allele of SKP1 isoform a [Homo
sapiens]
Length = 365
Score = 40.8 bits (94), Expect = 0.002
Identities = 24/86 (27%), Positives = 46/86 (53%)
Query: 219 RHDWHQTDSLVVVTVYGQIPLPAFNWVKASQTELHVHIVFDGNRVFQAQMKLWGVINVEQ 278
++DW+QT+S VV+T+ + V+ S+ EL + + +++L I EQ
Sbjct: 173 KYDWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQ 232
Query: 279 SSVFLMPSRVEISLVKADPGSWAQLE 304
S+ ++ +++EI L K + W +LE
Sbjct: 233 STFKVLSTKIEIKLKKPEAVRWEKLE 258
>gi|5730041 suppressor of G2 allele of SKP1 isoform b [Homo sapiens]
Length = 333
Score = 40.8 bits (94), Expect = 0.002
Identities = 24/86 (27%), Positives = 46/86 (53%)
Query: 219 RHDWHQTDSLVVVTVYGQIPLPAFNWVKASQTELHVHIVFDGNRVFQAQMKLWGVINVEQ 278
++DW+QT+S VV+T+ + V+ S+ EL + + +++L I EQ
Sbjct: 141 KYDWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQ 200
Query: 279 SSVFLMPSRVEISLVKADPGSWAQLE 304
S+ ++ +++EI L K + W +LE
Sbjct: 201 STFKVLSTKIEIKLKKPEAVRWEKLE 226
>gi|45331217 zinc finger protein 526 [Homo sapiens]
Length = 670
Score = 36.2 bits (82), Expect = 0.045
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 289 EISLVKADPGSWAQLE--HPDALAKKARAGVVLEMDEEESDDSDDDLSWTEEEEEEEAMG 346
E S + A P + + + H D+L K+ R G+ E +++E D+ DD EE E+EEAM
Sbjct: 201 ECSTLCATPEEFLEHQGTHFDSLEKEERNGLEEEEEDDEEDEEDD-----EEMEDEEAMA 255
Query: 347 E 347
E
Sbjct: 256 E 256
>gi|44771211 mediator complex subunit 13-like [Homo sapiens]
Length = 2210
Score = 35.0 bits (79), Expect = 0.099
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 56 IKGCTMGPHCAEKLPEAPQPEGPATSSSLQEQKPLNVIPKSAETLRRERPKSELPLKLLP 115
+K C +GP+ + + GP++SSSL P + K+AE + + PL
Sbjct: 431 LKRCAVGPNRPPTVSQPGFSAGPSSSSSL--PPPASSKHKTAERQEKGDKLQKRPLIPFH 488
Query: 116 LNISQALEMALEQKELDQEPG-AGLDSLIRTGSS 148
S A E+ +EQ Q+ G AG+DS + SS
Sbjct: 489 HRPSVAEELCMEQDTPGQKLGLAGIDSSLEVSSS 522
>gi|84875541 cytochrome b5 reductase 4 [Homo sapiens]
Length = 521
Score = 34.3 bits (77), Expect = 0.17
Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 22/107 (20%)
Query: 212 KQLPASCRHDWHQTDSLVVVTVYGQIPLPAFNWVKASQTELHVHIVFDGNRVFQAQMKLW 271
K+ P+ +DW QTDSLV + +Y K L IV N F+A+ +
Sbjct: 162 KEGPSYPSYDWFQTDSLVTIAIY----------TKQKDINLDSIIVDHQNDSFRAETIIK 211
Query: 272 GVINV----------EQSSVFLMPS--RVEISLVKADPGSWAQLEHP 306
+ + E SV ++ S ++EI L K + SW L HP
Sbjct: 212 DCLYLIHIGLSHEVQEDFSVRVVESVGKIEIVLQKKENTSWDFLGHP 258
>gi|181336739 multiple EGF-like-domains 11 [Homo sapiens]
Length = 1044
Score = 33.5 bits (75), Expect = 0.29
Identities = 27/94 (28%), Positives = 33/94 (35%), Gaps = 28/94 (29%)
Query: 134 EPGAGLDSLIRTGSSCQNPGCDAVYQGPE-------SDATPCTYHPGAPRFHEGMKSWSC 186
EPG G G C + GCD+ + GP + C GA G + W C
Sbjct: 121 EPGWG-------GPDCSS-GCDSDHWGPHCSNRCQCQNGALCNPITGACVCAAGFRGWRC 172
Query: 187 CGIQTLDFGAFLAQPGCRVGRHDWGKQLPASCRH 220
+ C G H G QLP CRH
Sbjct: 173 -------------EELCAPGTHGKGCQLPCQCRH 193
>gi|187960109 RNA binding motif protein 28 [Homo sapiens]
Length = 759
Score = 33.1 bits (74), Expect = 0.38
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 304 EHPDALAKKARAGVVLEMDEEESDDSDDDLS---WTEEEEEEE 343
+H +++ KK R +E +E + DD DDD + +E+EEEE
Sbjct: 213 KHQESVKKKGREEEDMEEEENDDDDDDDDEEDGVFDDEDEEEE 255
>gi|41406057 amyloid beta A4 protein isoform c precursor [Homo
sapiens]
Length = 695
Score = 32.7 bits (73), Expect = 0.49
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 307 DALAKKARAGVVLEMDEEESDDSDDDLSWTEEEEEEE 343
D + + A V E++EEE+DD +DD E EEE E
Sbjct: 223 DKVVEVAEEEEVAEVEEEEADDDEDDEDGDEVEEEAE 259
>gi|41406055 amyloid beta A4 protein isoform b precursor [Homo
sapiens]
Length = 751
Score = 32.7 bits (73), Expect = 0.49
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 307 DALAKKARAGVVLEMDEEESDDSDDDLSWTEEEEEEE 343
D + + A V E++EEE+DD +DD E EEE E
Sbjct: 223 DKVVEVAEEEEVAEVEEEEADDDEDDEDGDEVEEEAE 259
>gi|4502167 amyloid beta A4 protein isoform a precursor [Homo
sapiens]
Length = 770
Score = 32.7 bits (73), Expect = 0.49
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 307 DALAKKARAGVVLEMDEEESDDSDDDLSWTEEEEEEE 343
D + + A V E++EEE+DD +DD E EEE E
Sbjct: 223 DKVVEVAEEEEVAEVEEEEADDDEDDEDGDEVEEEAE 259
>gi|209915570 amyloid beta A4 protein isoform e precursor [Homo
sapiens]
Length = 639
Score = 32.7 bits (73), Expect = 0.49
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 307 DALAKKARAGVVLEMDEEESDDSDDDLSWTEEEEEEE 343
D + + A V E++EEE+DD +DD E EEE E
Sbjct: 167 DKVVEVAEEEEVAEVEEEEADDDEDDEDGDEVEEEAE 203
>gi|209915573 amyloid beta A4 protein isoform f precursor [Homo
sapiens]
Length = 714
Score = 32.7 bits (73), Expect = 0.49
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 307 DALAKKARAGVVLEMDEEESDDSDDDLSWTEEEEEEE 343
D + + A V E++EEE+DD +DD E EEE E
Sbjct: 167 DKVVEVAEEEEVAEVEEEEADDDEDDEDGDEVEEEAE 203
>gi|156142199 euchromatic histone-lysine N-methyltransferase 2
isoform b [Homo sapiens]
Length = 1176
Score = 32.7 bits (73), Expect = 0.49
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 18/73 (24%)
Query: 289 EISLVKADPGS---WAQL---------------EHPDALAKKARAGVVLEMDEEESDDSD 330
E++L K DPGS W + E D+ +K + ++ EEE ++ +
Sbjct: 248 EVTLTKGDPGSLEEWETVVGDDFSLYYDSYSVDERVDSDSKSEVEALTEQLSEEEEEEEE 307
Query: 331 DDLSWTEEEEEEE 343
++ EEEEEEE
Sbjct: 308 EEEEEEEEEEEEE 320
>gi|156142197 euchromatic histone-lysine N-methyltransferase 2
isoform a [Homo sapiens]
Length = 1210
Score = 32.7 bits (73), Expect = 0.49
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 18/73 (24%)
Query: 289 EISLVKADPGS---WAQL---------------EHPDALAKKARAGVVLEMDEEESDDSD 330
E++L K DPGS W + E D+ +K + ++ EEE ++ +
Sbjct: 248 EVTLTKGDPGSLEEWETVVGDDFSLYYDSYSVDERVDSDSKSEVEALTEQLSEEEEEEEE 307
Query: 331 DDLSWTEEEEEEE 343
++ EEEEEEE
Sbjct: 308 EEEEEEEEEEEEE 320
>gi|57529246 ubiquitin thioesterase 19 [Homo sapiens]
Length = 1318
Score = 32.7 bits (73), Expect = 0.49
Identities = 21/66 (31%), Positives = 30/66 (45%)
Query: 252 LHVHIVFDGNRVFQAQMKLWGVINVEQSSVFLMPSRVEISLVKADPGSWAQLEHPDALAK 311
L +H + F+ Q+KL +I EQ + SR++I L K W LE P A
Sbjct: 332 LRLHPGCGPHTTFRWQVKLRNLIEPEQCTFCFTASRIDICLRKRQSQRWGGLEAPAARVG 391
Query: 312 KARAGV 317
A+ V
Sbjct: 392 GAKVAV 397
>gi|122937335 F-box protein 46 [Homo sapiens]
Length = 603
Score = 32.7 bits (73), Expect = 0.49
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 10/59 (16%)
Query: 162 ESDATPCTYHPGAPRFHE---GMKSWSCCGIQTLDFGAFLAQPGCRVGRHDWGKQLPAS 217
+ D + C +HP P H+ G W CC A PGCR+G HD LP +
Sbjct: 539 KGDVSLCRWHP-KPYHHDLPYGRSYWMCCR------RADRETPGCRLGLHDNNWVLPCN 590
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 32.0 bits (71), Expect = 0.84
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 322 DEEESDDSDDDLSWTEEEEEEEAMGE 347
DE++ DD D+D EEEEEEE + E
Sbjct: 250 DEDDEDDDDEDDEEEEEEEEEEPVKE 275
Score = 31.6 bits (70), Expect = 1.1
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 320 EMDEEESDDSDDDLSWTEEEEEEE 343
E D+++ DD DDD EEEEEEE
Sbjct: 245 EDDDDDEDDEDDDDEDDEEEEEEE 268
Score = 31.2 bits (69), Expect = 1.4
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 306 PDALAKKARAGVVLEMDEEESDDSDDDLSWTEEEEEEEAM 345
P A+ A A + D+E+ +D +DD E++ EEEAM
Sbjct: 172 PAAMKAAAAAPASEDEDDEDDEDDEDDDDDEEDDSEEEAM 211
Score = 30.8 bits (68), Expect = 1.9
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 310 AKKARAGVVLEMDEEESDDSDDDLSWTEEEEEEE 343
AK + + DEEE DDS++D E+E+E+E
Sbjct: 134 AKNGKNAKKEDSDEEEDDDSEEDEEDDEDEDEDE 167
Score = 30.8 bits (68), Expect = 1.9
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 322 DEEESDDSDDDLSWTEEEEEEE 343
D++E D+ DDD EEEEEEE
Sbjct: 248 DDDEDDEDDDDEDDEEEEEEEE 269
Score = 29.3 bits (64), Expect = 5.4
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 322 DEEESDDSDDDLSWTEEEEEEE 343
D+E+ +D DD+ EEEEEEE
Sbjct: 249 DDEDDEDDDDEDDEEEEEEEEE 270
>gi|218505694 potassium channel tetramerisation domain containing 1
isoform b [Homo sapiens]
Length = 865
Score = 32.0 bits (71), Expect = 0.84
Identities = 15/25 (60%), Positives = 16/25 (64%)
Query: 322 DEEESDDSDDDLSWTEEEEEEEAMG 346
DEEE +D L EEEEEEE MG
Sbjct: 74 DEEEEEDGGGGLEEDEEEEEEEEMG 98
Score = 30.4 bits (67), Expect = 2.4
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 319 LEMDEEESDDSDDDLSWTEEEEEEEAMGE 347
LE DEEE ++ + L W E E E++ GE
Sbjct: 85 LEEDEEEEEEEEMGLDWDEPLEPEDSAGE 113
>gi|24371268 nucleosome assembly protein 1-like 5 [Homo sapiens]
Length = 182
Score = 32.0 bits (71), Expect = 0.84
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 319 LEMDEEESDDSDDDLSWTEEEEEEEAMGE 347
LE +EEE ++ +DD E+EEEEEA E
Sbjct: 134 LEGEEEEEEEYEDDEEEGEDEEEEEAAAE 162
>gi|48928019 Nedd4 binding protein 1 [Homo sapiens]
Length = 896
Score = 31.6 bits (70), Expect = 1.1
Identities = 26/111 (23%), Positives = 43/111 (38%), Gaps = 16/111 (14%)
Query: 7 NKGCGQHFDPNTNLPDSCCHHPGVPIFHDALKGWSCCRKRTVDFSEFLNIKGCTMGPH-- 64
++G H P++ H P+ + +K S C KR GC PH
Sbjct: 508 SRGASSHQPRVPLFPENGLHQQPEPLLPNNMK--SACEKRL----------GCCSSPHSK 555
Query: 65 --CAEKLPEAPQPEGPATSSSLQEQKPLNVIPKSAETLRRERPKSELPLKL 113
C+ P P P+ + + + P + I S ++R R ++P KL
Sbjct: 556 PNCSTLSPPMPLPQLLPSVTDARSAGPSDHIDSSVTGVQRFRDTLKIPYKL 606
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 31.6 bits (70), Expect = 1.1
Identities = 34/129 (26%), Positives = 43/129 (33%), Gaps = 29/129 (22%)
Query: 70 PEAPQP-EGPATSSSLQEQKPLNVIPKSAETLRRERPKSEL----------------PLK 112
P+ P P +GP + E KP+ + P RE P+ E P +
Sbjct: 1112 PDVPLPADGPERLALSPEDKPIRLSPSKITEPLREGPEEEPLAEREVKAEVEDMDEGPTE 1171
Query: 113 LLPLNISQALEMALEQKELDQEPGAG-----LDSLIRTGSSCQNPG-CDAVYQGPE---- 162
L PL L A G G +L TG SC P C +GPE
Sbjct: 1172 LPPLESPLPLPAAEAMATPSPAGGCGGGLLEAQALSATGQSCAEPSECPDFVEGPEPRVD 1231
Query: 163 --SDATPCT 169
PCT
Sbjct: 1232 SPGRTEPCT 1240
>gi|100816397 MYST histone acetyltransferase (monocytic leukemia) 4
[Homo sapiens]
Length = 2073
Score = 31.6 bits (70), Expect = 1.1
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 303 LEHPDALAKKARAGVVLEMDEEESDDSDDDLSWTEEEEEEE 343
L P++ G +LE+ +E S++ +++ EEEEEEE
Sbjct: 1046 LHSPESRPVTGERGQLLELSKESSEEEEEEEDEEEEEEEEE 1086
Score = 28.5 bits (62), Expect = 9.3
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 309 LAKKARAGVVLEMDEEESDDSDDDLSWTEEEEEEE 343
L+K++ E DEEE ++ +++ EEEEEEE
Sbjct: 1064 LSKESSEEEEEEEDEEEEEEEEEEEEDEEEEEEEE 1098
Score = 28.5 bits (62), Expect = 9.3
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 320 EMDEEESDDSDDDLSWTEEEEEEE 343
E +EEE ++ ++D EEEEEEE
Sbjct: 1078 EEEEEEEEEEEEDEEEEEEEEEEE 1101
Score = 28.5 bits (62), Expect = 9.3
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 320 EMDEEESDDSDDDLSWTEEEEEEE 343
E +EEE ++ +D+ EEEEEEE
Sbjct: 1079 EEEEEEEEEEEDEEEEEEEEEEEE 1102
Score = 28.5 bits (62), Expect = 9.3
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 320 EMDEEESDDSDDDLSWTEEEEEEE 343
E +EEE ++ D++ EEEEEEE
Sbjct: 1080 EEEEEEEEEEDEEEEEEEEEEEEE 1103
>gi|4503257 death-domain associated protein isoform a [Homo sapiens]
Length = 740
Score = 31.2 bits (69), Expect = 1.4
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 320 EMDEEESDDSDDDLSWTEEEEEEEA 344
E D+E+ ++SD++ EEEEEEEA
Sbjct: 434 ETDDEDDEESDEEEEEEEEEEEEEA 458
>gi|215422388 death-domain associated protein isoform a [Homo
sapiens]
Length = 740
Score = 31.2 bits (69), Expect = 1.4
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 320 EMDEEESDDSDDDLSWTEEEEEEEA 344
E D+E+ ++SD++ EEEEEEEA
Sbjct: 434 ETDDEDDEESDEEEEEEEEEEEEEA 458
>gi|215422366 death-domain associated protein isoform b [Homo
sapiens]
Length = 752
Score = 31.2 bits (69), Expect = 1.4
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 320 EMDEEESDDSDDDLSWTEEEEEEEA 344
E D+E+ ++SD++ EEEEEEEA
Sbjct: 446 ETDDEDDEESDEEEEEEEEEEEEEA 470
>gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens]
Length = 2303
Score = 31.2 bits (69), Expect = 1.4
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 47 TVDFSEFLNIKGCTMGPHCAEKLPEAPQPEGP--ATSSSLQEQKPLNVIPKSAETLRRER 104
T+ SE + G TM P ++ P AP P+GP AT SLQ + + A+ R R
Sbjct: 1192 TISPSELPDSPGQTMPPSRSKTPPLAPAPQGPPEATQFSLQWESYVKRFLDIADCRERCR 1251
Query: 105 PKSEL 109
SEL
Sbjct: 1252 LPSEL 1256
>gi|24497618 ATPase family, AAA domain containing 2 [Homo sapiens]
Length = 1390
Score = 30.8 bits (68), Expect = 1.9
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 320 EMDEEESDDSDDDLSWTEEEEEEEAMGE 347
E DE++ DD DDD +E++E+E GE
Sbjct: 260 EDDEDDDDDDDDDDDDDDEDDEDEEDGE 287
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.134 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,347,059
Number of Sequences: 37866
Number of extensions: 849744
Number of successful extensions: 6848
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 5705
Number of HSP's gapped (non-prelim): 890
length of query: 347
length of database: 18,247,518
effective HSP length: 103
effective length of query: 244
effective length of database: 14,347,320
effective search space: 3500746080
effective search space used: 3500746080
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.