Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: KCTD1 Sequence: fasta or formatted (865aa) NCBI GI: 218505694
Description:

potassium channel tetramerisation domain containing 1 isoform b

Referenced in:

Potassium Channels

Other entries for this name:
alt prot [257aa] potassium channel tetramerisation domain containing 1 isoform a
alt prot [257aa] potassium channel tetramerisation domain containing 1 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         58           6
 C cysteine            2.1         18           1
 D aspartate           5.0         43           2
 E glutamate           9.9         86           9
 F phenylalanine       3.0         26           2
 G glycine             7.5         65           4
 H histidine           2.5         22           3
 I isoleucine          3.8         33           1
 K lysine              4.3         37           2
 L leucine             8.8         76           2
 M methionine          2.0         17           1
 N asparagine          3.6         31           2
 P proline             7.4         64           2
 Q glutamine           3.2         28           2
 R arginine            7.7         67           2
 S serine              8.9         77           3
 T threonine           4.7         41           1
 V valine              4.9         42           4
 W tryptophan          0.7          6           1
 Y tyrosine            3.2         28           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   potassium channel tetramerisation domain containing... 
KCTD1                 0.288   potassium channel tetramerisation domain containing...
KCTD1                 0.288   potassium channel tetramerisation domain containing ...
KCTD15                0.232   potassium channel tetramerisation domain containing...
KCTD15                0.232   potassium channel tetramerisation domain containing...
KCTD15                0.190   potassium channel tetramerisation domain containing...
KCTD6                 0.049   potassium channel tetramerisation domain containing...
KCTD6                 0.049   potassium channel tetramerisation domain containing...
KCTD21                0.044   potassium channel tetramerisation domain containing ...
KCTD4                 0.036   potassium channel tetramerisation domain containing...
KCNRG                 0.029   potassium channel regulator isoform 2 
KCNRG                 0.029   potassium channel regulator isoform 1 
KCTD12                0.027   potassium channel tetramerisation domain containing ...
KCTD16                0.026   potassium channel tetramerisation domain containing ...
KCTD8                 0.025   potassium channel tetramerisation domain containing ...
KCTD19                0.025   potassium channel tetramerisation domain containing...
DAXX                  0.021   death-domain associated protein isoform a 
DAXX                  0.021   death-domain associated protein isoform a 
DAXX                  0.021   death-domain associated protein isoform b 
KCTD7                 0.021   potassium channel tetramerisation domain containing ...
CENPB                 0.021   centromere protein B 
KCTD14                0.021   potassium channel tetramerisation domain containing...
PELP1                 0.020   proline, glutamic acid and leucine rich protein 1 [...
KCTD11                0.019   potassium channel tetramerisation domain containing ...
KCTD10                0.018   potassium channel tetramerisation domain containing ...
BPTF                  0.017   bromodomain PHD finger transcription factor isoform ...
BPTF                  0.017   bromodomain PHD finger transcription factor isoform ...
DCAF8L2               0.017   DDB1 and CUL4 associated factor 8-like 2 
TTBK1                 0.017   tau tubulin kinase 1 
LOC647020             0.017   PREDICTED: similar to acidic (leucine-rich) nuclear...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press