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Search of human proteins with 69122931
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|69122931 PCAF associated factor 65 beta isoform b [Homo
sapiens]
(325 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|69122931 PCAF associated factor 65 beta isoform b [Homo sapiens] 647 0.0
gi|7657439 PCAF associated factor 65 beta isoform a [Homo sapiens] 645 0.0
gi|21071067 TBP-associated factor 5 [Homo sapiens] 128 8e-30
gi|156104862 ankyrin repeat domain 38 [Homo sapiens] 38 0.014
gi|83779014 katanin p80 subunit B 1 [Homo sapiens] 37 0.024
gi|19923229 protein phosphatase 2, regulatory subunit B'', alpha... 33 0.26
gi|4885105 chromatin assembly factor 1 subunit B [Homo sapiens] 32 0.59
gi|213021190 transducin beta-like 1X isoform b [Homo sapiens] 32 0.77
gi|213021188 transducin beta-like 1X isoform b [Homo sapiens] 32 0.77
gi|213021186 transducin beta-like 1X isoform a [Homo sapiens] 32 0.77
gi|5032159 transducin beta-like 1X isoform a [Homo sapiens] 32 0.77
gi|109948304 smu-1 suppressor of mec-8 and unc-52 homolog [Homo ... 32 1.0
gi|62234461 Notchless gene homolog isoform a [Homo sapiens] 32 1.0
gi|154354990 ankyrin repeat domain 26 [Homo sapiens] 31 1.3
gi|105990532 apolipoprotein B precursor [Homo sapiens] 31 1.7
gi|124256480 APG16 autophagy 16-like isoform 1 [Homo sapiens] 31 1.7
gi|124256478 APG16 autophagy 16-like isoform 2 [Homo sapiens] 31 1.7
gi|19913371 transducin (beta)-like 1 X-linked receptor 1 [Homo s... 30 2.2
gi|113865883 WD repeat domain 38 [Homo sapiens] 30 2.9
gi|150378498 fragile site-associated protein [Homo sapiens] 30 3.8
gi|8923881 WD SOCS-box protein 2 [Homo sapiens] 30 3.8
gi|62234438 Notchless gene homolog isoform b [Homo sapiens] 30 3.8
gi|19913369 transducin beta-like 3 [Homo sapiens] 30 3.8
gi|26665869 WD repeat domain 51B [Homo sapiens] 30 3.8
gi|21536376 ATP-binding cassette, sub-family A member 1 [Homo sa... 29 5.0
gi|157426879 nuclear protein localization 4 [Homo sapiens] 29 5.0
gi|226246554 hypothetical protein LOC643677 [Homo sapiens] 29 6.5
gi|239756039 PREDICTED: hypothetical protein LOC643677 [Homo sap... 29 6.5
gi|239750569 PREDICTED: hypothetical protein LOC643677 [Homo sap... 29 6.5
gi|239744870 PREDICTED: hypothetical protein LOC643677 [Homo sap... 29 6.5
>gi|69122931 PCAF associated factor 65 beta isoform b [Homo sapiens]
Length = 325
Score = 647 bits (1669), Expect = 0.0
Identities = 325/325 (100%), Positives = 325/325 (100%)
Query: 1 MKRVRTEQIQMAVSCYLKRRQYVDSDGPLKQGLRLSQTAEEMAANLTVQSESGCANIVSA 60
MKRVRTEQIQMAVSCYLKRRQYVDSDGPLKQGLRLSQTAEEMAANLTVQSESGCANIVSA
Sbjct: 1 MKRVRTEQIQMAVSCYLKRRQYVDSDGPLKQGLRLSQTAEEMAANLTVQSESGCANIVSA 60
Query: 61 APCQAEPQQYEVQFGRLRNFLTDSDSQHSHEVMPLLYPLFVYLHLNLVQNSPKSTVESFY 120
APCQAEPQQYEVQFGRLRNFLTDSDSQHSHEVMPLLYPLFVYLHLNLVQNSPKSTVESFY
Sbjct: 61 APCQAEPQQYEVQFGRLRNFLTDSDSQHSHEVMPLLYPLFVYLHLNLVQNSPKSTVESFY 120
Query: 121 SRFHGMFLQNASQKDVIEQLQTTQTIQDILSNFKLRAFLDNKYVVRLQEDSYNYLIRYLQ 180
SRFHGMFLQNASQKDVIEQLQTTQTIQDILSNFKLRAFLDNKYVVRLQEDSYNYLIRYLQ
Sbjct: 121 SRFHGMFLQNASQKDVIEQLQTTQTIQDILSNFKLRAFLDNKYVVRLQEDSYNYLIRYLQ 180
Query: 181 SDNNTALCKVLTLHIHLDVQPAKRTDYQLYASGSSSRSENNGLEPPDMPSPILQNEAALE 240
SDNNTALCKVLTLHIHLDVQPAKRTDYQLYASGSSSRSENNGLEPPDMPSPILQNEAALE
Sbjct: 181 SDNNTALCKVLTLHIHLDVQPAKRTDYQLYASGSSSRSENNGLEPPDMPSPILQNEAALE 240
Query: 241 VLQESIKRVKDGPPSLTTICFYAFYNTEQLLNTAEISPDSKLLAAGFDNSCIKLWSLRSK 300
VLQESIKRVKDGPPSLTTICFYAFYNTEQLLNTAEISPDSKLLAAGFDNSCIKLWSLRSK
Sbjct: 241 VLQESIKRVKDGPPSLTTICFYAFYNTEQLLNTAEISPDSKLLAAGFDNSCIKLWSLRSK 300
Query: 301 KLKSEPHQVDVSRIHLACDILEEEV 325
KLKSEPHQVDVSRIHLACDILEEEV
Sbjct: 301 KLKSEPHQVDVSRIHLACDILEEEV 325
>gi|7657439 PCAF associated factor 65 beta isoform a [Homo sapiens]
Length = 589
Score = 645 bits (1665), Expect = 0.0
Identities = 324/324 (100%), Positives = 324/324 (100%)
Query: 1 MKRVRTEQIQMAVSCYLKRRQYVDSDGPLKQGLRLSQTAEEMAANLTVQSESGCANIVSA 60
MKRVRTEQIQMAVSCYLKRRQYVDSDGPLKQGLRLSQTAEEMAANLTVQSESGCANIVSA
Sbjct: 1 MKRVRTEQIQMAVSCYLKRRQYVDSDGPLKQGLRLSQTAEEMAANLTVQSESGCANIVSA 60
Query: 61 APCQAEPQQYEVQFGRLRNFLTDSDSQHSHEVMPLLYPLFVYLHLNLVQNSPKSTVESFY 120
APCQAEPQQYEVQFGRLRNFLTDSDSQHSHEVMPLLYPLFVYLHLNLVQNSPKSTVESFY
Sbjct: 61 APCQAEPQQYEVQFGRLRNFLTDSDSQHSHEVMPLLYPLFVYLHLNLVQNSPKSTVESFY 120
Query: 121 SRFHGMFLQNASQKDVIEQLQTTQTIQDILSNFKLRAFLDNKYVVRLQEDSYNYLIRYLQ 180
SRFHGMFLQNASQKDVIEQLQTTQTIQDILSNFKLRAFLDNKYVVRLQEDSYNYLIRYLQ
Sbjct: 121 SRFHGMFLQNASQKDVIEQLQTTQTIQDILSNFKLRAFLDNKYVVRLQEDSYNYLIRYLQ 180
Query: 181 SDNNTALCKVLTLHIHLDVQPAKRTDYQLYASGSSSRSENNGLEPPDMPSPILQNEAALE 240
SDNNTALCKVLTLHIHLDVQPAKRTDYQLYASGSSSRSENNGLEPPDMPSPILQNEAALE
Sbjct: 181 SDNNTALCKVLTLHIHLDVQPAKRTDYQLYASGSSSRSENNGLEPPDMPSPILQNEAALE 240
Query: 241 VLQESIKRVKDGPPSLTTICFYAFYNTEQLLNTAEISPDSKLLAAGFDNSCIKLWSLRSK 300
VLQESIKRVKDGPPSLTTICFYAFYNTEQLLNTAEISPDSKLLAAGFDNSCIKLWSLRSK
Sbjct: 241 VLQESIKRVKDGPPSLTTICFYAFYNTEQLLNTAEISPDSKLLAAGFDNSCIKLWSLRSK 300
Query: 301 KLKSEPHQVDVSRIHLACDILEEE 324
KLKSEPHQVDVSRIHLACDILEEE
Sbjct: 301 KLKSEPHQVDVSRIHLACDILEEE 324
>gi|21071067 TBP-associated factor 5 [Homo sapiens]
Length = 800
Score = 128 bits (321), Expect = 8e-30
Identities = 93/361 (25%), Positives = 161/361 (44%), Gaps = 62/361 (17%)
Query: 25 SDGPLKQGLRLSQTAEEMAANLTVQSESGCANIVSAAPCQAEPQQYEVQFGRLRNFLTDS 84
S + G A ++ V+ + + ++SA Q +P YE + L++F+ S
Sbjct: 169 SGATVVSGSASGPAAPGKVGSVAVEDQPDVSAVLSAYNQQGDPTMYEEYYSGLKHFIECS 228
Query: 85 DSQHSHEVMPLLYPLFVYLHLNLVQNSPKSTVESFYSRFHGMFLQNASQKDVIEQLQTTQ 144
H E+ L YPLFV+++L LV N ++ +SF+ +FHG Q +D + L +
Sbjct: 229 LDCHRAELSQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGD--QECYYQDDLRVLSSLT 286
Query: 145 TIQDILSNFKLRAFLDNKYVVRLQEDSYNYLIRYLQSDNNTALCKVLTLHIHLDV-QPAK 203
+ + N + F +K+V+R+ DSY L R+LQ N + ++ H+++D+
Sbjct: 287 KKEHMKGNETMLDFRTSKFVLRISRDSYQLLKRHLQEKQNNQIWNIVQEHLYIDIFDGMP 346
Query: 204 RTDYQLYA-----SGSSSRSENNG------LEPPD------------------------- 227
R+ Q+ A +G + R N L+ P+
Sbjct: 347 RSKQQIDAMVGSLAGEAKREANKSKVFFGLLKEPEIEVPLDDEDEEGENEEGKPKKKKPK 406
Query: 228 --------------------MPSPILQNEAALEV---LQESIKRVKDGPPSLTTICFYAF 264
+P P L++ L+ ++E+ KRV+ GP L +ICFY F
Sbjct: 407 KDSIGSKSKKQDPNAPPQNRIPLPELKDSDKLDKIMNMKETTKRVRLGPDCLPSICFYTF 466
Query: 265 YNTEQLLNTAEISPDSKLLAAGFDNSCIKLWSLRSKKLKSEPHQVDVSRIHLACDILEEE 324
N Q L +++ DS L+A GF +S +++WS+ KKL+S D+S I D + E
Sbjct: 467 LNAYQGLTAVDVTDDSSLIAGGFADSTVRVWSVTPKKLRSVKQASDLSLIDKESDDVLER 526
Query: 325 V 325
+
Sbjct: 527 I 527
>gi|156104862 ankyrin repeat domain 38 [Homo sapiens]
Length = 995
Score = 37.7 bits (86), Expect = 0.014
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 209 LYASGSSSRSENNGLEPPDMPSPILQNEAALEVLQESIKRVKDGPPSLTTICFYAFYNTE 268
L+ GS + S PP +PSPI +NE LE ++ +I + PP + TE
Sbjct: 276 LFTPGSPTPS------PPPLPSPIPENELLLEEIELNISEIPPPPPVEVDMRSIGIRVTE 329
Query: 269 QLLNTAEISPDS 280
+ L A + P S
Sbjct: 330 ESLGLARVDPGS 341
>gi|83779014 katanin p80 subunit B 1 [Homo sapiens]
Length = 655
Score = 37.0 bits (84), Expect = 0.024
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 260 CFYAFYNTEQLLNTAEISPDSKLLAAGFDNSCIKLWSLRSKKLKSE 305
C + + Q + SPD K LA+ D+ +KLW L + K+ SE
Sbjct: 139 CVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSE 184
>gi|19923229 protein phosphatase 2, regulatory subunit B'', alpha
isoform 1 [Homo sapiens]
Length = 1150
Score = 33.5 bits (75), Expect = 0.26
Identities = 19/63 (30%), Positives = 30/63 (47%)
Query: 98 PLFVYLHLNLVQNSPKSTVESFYSRFHGMFLQNASQKDVIEQLQTTQTIQDILSNFKLRA 157
P F L + V+ P S S + MFLQN S++D++ Q+ I + S ++
Sbjct: 172 PSFGLLRSSSVEEKPLSHRNSLDTNLTSMFLQNFSEEDLVTQILEKHKIDNFSSGTDIKM 231
Query: 158 FLD 160
LD
Sbjct: 232 CLD 234
>gi|4885105 chromatin assembly factor 1 subunit B [Homo sapiens]
Length = 559
Score = 32.3 bits (72), Expect = 0.59
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 246 IKRVKDGPPSLTTICFYA-FYNTEQLLNTAEISPDSKLLAAGFDNSCIKLWSLRSKKLKS 304
I +V+ GP + F + + +N SP ++LA+G D++ I LW + K
Sbjct: 43 IWKVEKGPDGKAIVEFLSNLARHTKAVNVVRFSPTGEILASGGDDAVILLWKVNDNK--- 99
Query: 305 EPHQV 309
EP Q+
Sbjct: 100 EPEQI 104
>gi|213021190 transducin beta-like 1X isoform b [Homo sapiens]
Length = 526
Score = 32.0 bits (71), Expect = 0.77
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 259 ICFYAFYNTEQLLNTAEISPDSKLLAAGFDNSCIKLWSLRSKKL 302
+C + ++ + + SPD K LA+G + C+ +W+ +S L
Sbjct: 445 VCTHTLTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQSGNL 488
>gi|213021188 transducin beta-like 1X isoform b [Homo sapiens]
Length = 526
Score = 32.0 bits (71), Expect = 0.77
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 259 ICFYAFYNTEQLLNTAEISPDSKLLAAGFDNSCIKLWSLRSKKL 302
+C + ++ + + SPD K LA+G + C+ +W+ +S L
Sbjct: 445 VCTHTLTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQSGNL 488
>gi|213021186 transducin beta-like 1X isoform a [Homo sapiens]
Length = 577
Score = 32.0 bits (71), Expect = 0.77
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 259 ICFYAFYNTEQLLNTAEISPDSKLLAAGFDNSCIKLWSLRSKKL 302
+C + ++ + + SPD K LA+G + C+ +W+ +S L
Sbjct: 496 VCTHTLTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQSGNL 539
>gi|5032159 transducin beta-like 1X isoform a [Homo sapiens]
Length = 577
Score = 32.0 bits (71), Expect = 0.77
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 259 ICFYAFYNTEQLLNTAEISPDSKLLAAGFDNSCIKLWSLRSKKL 302
+C + ++ + + SPD K LA+G + C+ +W+ +S L
Sbjct: 496 VCTHTLTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQSGNL 539
>gi|109948304 smu-1 suppressor of mec-8 and unc-52 homolog [Homo
sapiens]
Length = 513
Score = 31.6 bits (70), Expect = 1.0
Identities = 18/87 (20%), Positives = 41/87 (47%), Gaps = 8/87 (9%)
Query: 219 ENNGLEPPDMPSPILQNEAALEVLQESIKRVKDGPPSLTTICFYAFYNTEQLLNTAEISP 278
++ GL PP M + + +AA++ ++E T + + + + + A SP
Sbjct: 173 QHQGLLPPGMTIDLFRGKAAVKDVEEE--------KFPTQLSRHIKFGQKSHVECARFSP 224
Query: 279 DSKLLAAGFDNSCIKLWSLRSKKLKSE 305
D + L G + I++W+ + K++ +
Sbjct: 225 DGQYLVTGSVDGFIEVWNFTTGKIRKD 251
>gi|62234461 Notchless gene homolog isoform a [Homo sapiens]
Length = 485
Score = 31.6 bits (70), Expect = 1.0
Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 16/129 (12%)
Query: 187 LCKVLTLHIHLDVQPAKRTDYQLYASGSSSRSENNGLEPPDMPSPILQ-NEAALE----V 241
LC+ L H H A TDY L +G+ +E + + P D+ + + E AL V
Sbjct: 279 LCRTLQGHGHWVNTMALSTDYAL-RTGAFEPAEAS-VNPQDLQGSLQELKERALSRYNLV 336
Query: 242 LQESIKRVKDGPPSLTTICFYAFYNT---------EQLLNTAEISPDSKLLAAGFDNSCI 292
+ +R+ G T + + + L+N SPDS+++A+ + I
Sbjct: 337 RGQGPERLVSGSDDFTLFLWSPAEDKKPLTRMTGHQALINQVLFSPDSRIVASASFDKSI 396
Query: 293 KLWSLRSKK 301
KLW R+ K
Sbjct: 397 KLWDGRTGK 405
Score = 29.6 bits (65), Expect = 3.8
Identities = 11/26 (42%), Positives = 20/26 (76%)
Query: 277 SPDSKLLAAGFDNSCIKLWSLRSKKL 302
S DS+LL +G +S +K+W ++++KL
Sbjct: 423 SADSRLLVSGSSDSTLKVWDVKAQKL 448
>gi|154354990 ankyrin repeat domain 26 [Homo sapiens]
Length = 1710
Score = 31.2 bits (69), Expect = 1.3
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 16 YLKRRQYVDSDGPLKQGLRLSQTAEEMAANLTVQSESGCANIVSA---APCQAEPQQYEV 72
+LK RQY + ++ + + Q +E+A L QS S + V++ + E Q +
Sbjct: 1202 HLKERQYQYENEKAEREVVVRQLQQELADTLKKQSMSEASLEVTSRYRINLEDETQDLKK 1261
Query: 73 QFGRLRNFLTDSDSQHSHEV 92
+ G++RN L ++ +H+ V
Sbjct: 1262 KLGQIRNQLQEAQDRHTEAV 1281
>gi|105990532 apolipoprotein B precursor [Homo sapiens]
Length = 4563
Score = 30.8 bits (68), Expect = 1.7
Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
Query: 137 IEQLQTTQTIQDI--LSNFKLRAFLDNKYVVRLQEDSYNYLIRYLQSDNNT 185
I+ L+TT+ ++++ L F + DN + +L+E + YLI Y+Q + NT
Sbjct: 4287 IQSLKTTEVLRNLQDLLQFIFQLIEDN--IKQLKEMKFTYLINYIQDEINT 4335
>gi|124256480 APG16 autophagy 16-like isoform 1 [Homo sapiens]
Length = 607
Score = 30.8 bits (68), Expect = 1.7
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 257 TTICFYAFYNTEQLLNTAEISPDSKLLAAGFDNSCIKLWSLRSKK 301
T +C + ++ E +N + SP S+LLA G + +KLW + +K
Sbjct: 313 TALCVFDAHDGE--VNAVQFSPGSRLLATGGMDRRVKLWEVFGEK 355
>gi|124256478 APG16 autophagy 16-like isoform 2 [Homo sapiens]
Length = 588
Score = 30.8 bits (68), Expect = 1.7
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 257 TTICFYAFYNTEQLLNTAEISPDSKLLAAGFDNSCIKLWSLRSKK 301
T +C + ++ E +N + SP S+LLA G + +KLW + +K
Sbjct: 294 TALCVFDAHDGE--VNAVQFSPGSRLLATGGMDRRVKLWEVFGEK 336
>gi|19913371 transducin (beta)-like 1 X-linked receptor 1 [Homo
sapiens]
Length = 514
Score = 30.4 bits (67), Expect = 2.2
Identities = 11/44 (25%), Positives = 24/44 (54%)
Query: 259 ICFYAFYNTEQLLNTAEISPDSKLLAAGFDNSCIKLWSLRSKKL 302
IC + ++ + + SPD + LA+G + C+ +W+ ++ L
Sbjct: 433 ICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQTGAL 476
>gi|113865883 WD repeat domain 38 [Homo sapiens]
Length = 314
Score = 30.0 bits (66), Expect = 2.9
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 271 LNTAEISPDSKLLAAGFDNSCIKLWSLRSKKL 302
+N++ SPD ++L G ++ C+ W RS +L
Sbjct: 24 VNSSAFSPDGQMLLTGSEDGCVYGWETRSGQL 55
>gi|150378498 fragile site-associated protein [Homo sapiens]
Length = 5005
Score = 29.6 bits (65), Expect = 3.8
Identities = 39/181 (21%), Positives = 68/181 (37%), Gaps = 27/181 (14%)
Query: 81 LTDSDSQHSHEVMPLLYPLFVYLHLNLVQNSPKSTVESFYSRFHGMFLQNASQKDVIEQL 140
L S+ QH V +++ + + +L + T+ES R HG F KDV+ Q
Sbjct: 2765 LVTSEPQH---VTLIVFGIGMVNRTHLEADIGGLTMESELKRIHGSFTLKEKMKDVLHQK 2821
Query: 141 QTTQ------------TIQDILSNFKLRAFLDNKYVVRLQE-----------DSYNYLIR 177
T ++ I N +L F + QE Y +
Sbjct: 2822 MTETCATAHIGGVNIVLLEGITPNIQLEDFPTSPTSTAKQEFLTVVKCSIAKSQALYSAQ 2881
Query: 178 YLQSDNNTALCKVLTLHIHLDVQPAKRTDYQLYASGSSSRSENNGL-EPPDMPSPILQNE 236
NN A+ KV + I++ PA + +S S+ ++ + +P P P+ ++
Sbjct: 2882 RGLKTNNAAVFKVGAISINIPQHPATLHSMMVRSSHQLSKQISDLIRQPSTAPQPVKEDI 2941
Query: 237 A 237
A
Sbjct: 2942 A 2942
>gi|8923881 WD SOCS-box protein 2 [Homo sapiens]
Length = 404
Score = 29.6 bits (65), Expect = 3.8
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 269 QLLNTAEISPDSKLLAAGFDNSCIKLWSLRSKKL--KSEPHQVDVSRIHLACD 319
Q + ISPD +L + + LWS+RS L K E HQ V ++CD
Sbjct: 198 QWVYCCSISPDCSMLCSAAGEKSVFLWSMRSYTLIRKLEGHQSSV----VSCD 246
>gi|62234438 Notchless gene homolog isoform b [Homo sapiens]
Length = 193
Score = 29.6 bits (65), Expect = 3.8
Identities = 11/26 (42%), Positives = 20/26 (76%)
Query: 277 SPDSKLLAAGFDNSCIKLWSLRSKKL 302
S DS+LL +G +S +K+W ++++KL
Sbjct: 131 SADSRLLVSGSSDSTLKVWDVKAQKL 156
Score = 29.3 bits (64), Expect = 5.0
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 268 EQLLNTAEISPDSKLLAAGFDNSCIKLWSLRSKK 301
+ L+N SPDS+++A+ + IKLW R+ K
Sbjct: 80 QALINQVLFSPDSRIVASASFDKSIKLWDGRTGK 113
>gi|19913369 transducin beta-like 3 [Homo sapiens]
Length = 808
Score = 29.6 bits (65), Expect = 3.8
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 271 LNTAEISPDSKLLAAGFDNSCIKLWSL 297
+N+ I+P+ KLLA G + KLW+L
Sbjct: 482 INSVAIAPNDKLLATGSQDRTAKLWAL 508
>gi|26665869 WD repeat domain 51B [Homo sapiens]
Length = 478
Score = 29.6 bits (65), Expect = 3.8
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 262 YAFYNTEQLLNTAEISPDSKLLAAGFDNSCIKLWSLRSKK 301
Y+ Y + A+ SPD +L+ + ++ IK+W +K+
Sbjct: 138 YSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQ 177
>gi|21536376 ATP-binding cassette, sub-family A member 1 [Homo
sapiens]
Length = 2261
Score = 29.3 bits (64), Expect = 5.0
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 107 LVQNSPKSTVESFYSRFHGMFL---QNASQKDVIEQLQTTQTIQDILSNFKLRAFL-DNK 162
+V N KS V +S + L ++ S KD+ + L+T Q I+ SN KL+ FL DN+
Sbjct: 93 VVGNFNKSIVARLFSDARRLLLYSQKDTSMKDMRKVLRTLQQIKKSSSNLKLQDFLVDNE 152
>gi|157426879 nuclear protein localization 4 [Homo sapiens]
Length = 608
Score = 29.3 bits (64), Expect = 5.0
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 18/117 (15%)
Query: 80 FLTDSDSQHSHEVMPLLYPLFV-YLHLNLVQNSPKSTVESFYSRFHGMFLQNASQKDVIE 138
F D D + +E+ L PL V YL +++ PK V +F + ++N +DV+
Sbjct: 425 FYKDVD-KFGNEITQLARPLPVEYLIIDITTTFPKDPVYTFSISQNPFPIEN---RDVLG 480
Query: 139 QLQ------------TTQTIQDILSNFKLRAFLDNKYVVRLQEDSYNYLIRYLQSDN 183
+ Q T+ D +S+F L FL V+ LQ DS + L+ +++ N
Sbjct: 481 ETQDFHSLATYLSQNTSSVFLDTISDFHLLLFLVTNEVMPLQ-DSISLLLEAVRTRN 536
>gi|226246554 hypothetical protein LOC643677 [Homo sapiens]
Length = 7081
Score = 28.9 bits (63), Expect = 6.5
Identities = 17/68 (25%), Positives = 29/68 (42%)
Query: 20 RQYVDSDGPLKQGLRLSQTAEEMAANLTVQSESGCANIVSAAPCQAEPQQYEVQFGRLRN 79
R + P + +L + +E +NL V CA+I+S + P+ EV +
Sbjct: 3821 RHLLHGKEPQRSNKKLEKMTQEDESNLNVVQNKLCASILSPPHLEWNPRIKEVYMRGITR 3880
Query: 80 FLTDSDSQ 87
F S +Q
Sbjct: 3881 FCLSSSTQ 3888
>gi|239756039 PREDICTED: hypothetical protein LOC643677 [Homo sapiens]
Length = 6929
Score = 28.9 bits (63), Expect = 6.5
Identities = 17/68 (25%), Positives = 29/68 (42%)
Query: 20 RQYVDSDGPLKQGLRLSQTAEEMAANLTVQSESGCANIVSAAPCQAEPQQYEVQFGRLRN 79
R + P + +L + +E +NL V CA+I+S + P+ EV +
Sbjct: 3750 RHLLHGKEPQRSNKKLEKMTQEDESNLNVVQNKLCASILSPPHLEWNPRIKEVYMRGITR 3809
Query: 80 FLTDSDSQ 87
F S +Q
Sbjct: 3810 FCLSSSTQ 3817
>gi|239750569 PREDICTED: hypothetical protein LOC643677 [Homo sapiens]
Length = 6929
Score = 28.9 bits (63), Expect = 6.5
Identities = 17/68 (25%), Positives = 29/68 (42%)
Query: 20 RQYVDSDGPLKQGLRLSQTAEEMAANLTVQSESGCANIVSAAPCQAEPQQYEVQFGRLRN 79
R + P + +L + +E +NL V CA+I+S + P+ EV +
Sbjct: 3750 RHLLHGKEPQRSNKKLEKMTQEDESNLNVVQNKLCASILSPPHLEWNPRIKEVYMRGITR 3809
Query: 80 FLTDSDSQ 87
F S +Q
Sbjct: 3810 FCLSSSTQ 3817
>gi|239744870 PREDICTED: hypothetical protein LOC643677 [Homo sapiens]
Length = 6929
Score = 28.9 bits (63), Expect = 6.5
Identities = 17/68 (25%), Positives = 29/68 (42%)
Query: 20 RQYVDSDGPLKQGLRLSQTAEEMAANLTVQSESGCANIVSAAPCQAEPQQYEVQFGRLRN 79
R + P + +L + +E +NL V CA+I+S + P+ EV +
Sbjct: 3750 RHLLHGKEPQRSNKKLEKMTQEDESNLNVVQNKLCASILSPPHLEWNPRIKEVYMRGITR 3809
Query: 80 FLTDSDSQ 87
F S +Q
Sbjct: 3810 FCLSSSTQ 3817
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.131 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,799,578
Number of Sequences: 37866
Number of extensions: 497411
Number of successful extensions: 1648
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1561
Number of HSP's gapped (non-prelim): 100
length of query: 325
length of database: 18,247,518
effective HSP length: 102
effective length of query: 223
effective length of database: 14,385,186
effective search space: 3207896478
effective search space used: 3207896478
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.