ABCA1 13327

Name: ABCA1	Sequence: fasta or formatted (2261aa)		NCBI GI: 21536376
Description: ATP-binding cassette, sub-family A member 1		Referenced in: ATP-binding Cassette Proteins
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.5 124 3 C cysteine 1.7 39 2 D aspartate 5.1 115 3 E glutamate 5.7 128 3 F phenylalanine 5.2 118 2 G glycine 6.5 147 3 H histidine 1.8 40 2 I isoleucine 5.7 128 3 K lysine 5.7 129 2 L leucine 11.3 256 5 M methionine 2.7 62 2 N asparagine 4.6 103 2 P proline 4.6 105 3 Q glutamine 3.9 88 3 R arginine 4.5 102 3 S serine 8.0 180 5 T threonine 5.3 120 3 V valine 7.4 168 2 W tryptophan 1.8 40 1 Y tyrosine 3.1 69 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 ATP-binding cassette, sub-family A member 1 ABCA4 0.489 ATP-binding cassette, sub-family A member 4 ABCA7 0.448 ATP-binding cassette, sub-family A, member 7 ABCA2 0.329 ATP-binding cassette, sub-family A, member 2 isoform... ABCA2 0.329 ATP-binding cassette, sub-family A, member 2 isoform... ABCA12 0.255 ATP-binding cassette, sub-family A, member 12 isofor... ABCA12 0.255 ATP-binding cassette, sub-family A, member 12 isofor... ABCA13 0.232 ATP binding cassette, sub-family A (ABC1), member 13... ABCA3 0.113 ATP-binding cassette, sub-family A member 3 ABCA10 0.061 ATP-binding cassette, sub-family A, member 10 [Homo... ABCA5 0.060 ATP-binding cassette, sub-family A , member 5 ABCA5 0.060 ATP-binding cassette, sub-family A , member 5 ABCA9 0.058 ATP-binding cassette, sub-family A, member 9 ABCA6 0.055 ATP-binding cassette, sub-family A, member 6 ABCA8 0.052 ATP-binding cassette, sub-family A member 8 LOC342293 0.028 PREDICTED: similar to hCG18626 LOC342293 0.028 PREDICTED: similar to hCG18626 LOC342293 0.028 PREDICTED: similar to hCG18626 ABCB1 0.015 ATP-binding cassette, subfamily B, member 1 ABCB4 0.015 ATP-binding cassette, subfamily B, member 4 isoform B... ABCB4 0.015 ATP-binding cassette, subfamily B, member 4 isoform C... ABCB4 0.015 ATP-binding cassette, subfamily B, member 4 isoform A... ABCB11 0.015 ATP-binding cassette, sub-family B (MDR/TAP), member... ABCB5 0.014 ATP-binding cassette, sub-family B, member 5 ABCG1 0.013 ATP-binding cassette sub-family G member 1 isoform 7... ABCG1 0.013 ATP-binding cassette sub-family G member 1 isoform 6... ABCG1 0.013 ATP-binding cassette sub-family G member 1 isoform 5... ABCG1 0.013 ATP-binding cassette sub-family G member 1 isoform 3... ABCG1 0.013 ATP-binding cassette sub-family G member 1 isoform 4... ABCG1 0.013 ATP-binding cassette sub-family G member 1 isoform 2... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.