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Search of human proteins with 66882532
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|66882532 farnesyltransferase, CAAX box, alpha isoform c
[Homo sapiens]
(312 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|66882532 farnesyltransferase, CAAX box, alpha isoform c [Homo... 647 0.0
gi|4503771 farnesyltransferase, CAAX box, alpha isoform a [Homo ... 532 e-151
gi|66882524 farnesyltransferase, CAAX box, alpha isoform b [Homo... 511 e-145
gi|53828918 Rab geranylgeranyltransferase alpha [Homo sapiens] 72 8e-13
gi|33469951 Rab geranylgeranyltransferase alpha [Homo sapiens] 72 8e-13
gi|55770902 opioid growth factor receptor-like 1 [Homo sapiens] 43 4e-04
gi|38683860 insulin receptor substrate 2 [Homo sapiens] 40 0.003
gi|153792604 protein prenyltransferase alpha subunit repeat cont... 40 0.003
gi|5032187 transducer of ERBB2, 1 [Homo sapiens] 39 0.005
gi|239757043 PREDICTED: functional smad suppressing element 18 [... 37 0.023
gi|4503825 frizzled 1 [Homo sapiens] 37 0.029
gi|9257222 forkhead box O1 [Homo sapiens] 37 0.029
gi|239751555 PREDICTED: functional smad suppressing element 18 [... 37 0.029
gi|239746067 PREDICTED: functional smad suppressing element 18 [... 37 0.029
gi|147902746 MEX3A protein [Homo sapiens] 36 0.038
gi|23503317 coiled-coil domain containing 96 [Homo sapiens] 36 0.038
gi|195972805 myocyte enhancer factor 2A isoform 4 [Homo sapiens] 35 0.066
gi|195972803 myocyte enhancer factor 2A isoform 3 [Homo sapiens] 35 0.066
gi|195972801 myocyte enhancer factor 2A isoform 2 [Homo sapiens] 35 0.066
gi|195972799 myocyte enhancer factor 2A isoform 1 [Homo sapiens] 35 0.066
gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo... 35 0.066
gi|239753353 PREDICTED: hypothetical protein [Homo sapiens] 35 0.066
gi|239747921 PREDICTED: hypothetical protein XP_002346480 [Homo ... 35 0.066
gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo... 35 0.066
gi|239741815 PREDICTED: hypothetical protein XP_002342320 [Homo ... 35 0.066
gi|18426913 drebrin 1 isoform b [Homo sapiens] 35 0.066
gi|18426915 drebrin 1 isoform a [Homo sapiens] 35 0.066
gi|222144283 hypothetical protein LOC65998 [Homo sapiens] 35 0.086
gi|4507877 vinculin isoform VCL [Homo sapiens] 35 0.086
gi|7669550 vinculin isoform meta-VCL [Homo sapiens] 35 0.086
>gi|66882532 farnesyltransferase, CAAX box, alpha isoform c [Homo
sapiens]
Length = 312
Score = 647 bits (1670), Expect = 0.0
Identities = 312/312 (100%), Positives = 312/312 (100%)
Query: 1 MAATEGVGEAAQGGEPGQPAQPPPQPHPPPPQQQHKEEMAAEAGEAVASPMDDGFVSLDS 60
MAATEGVGEAAQGGEPGQPAQPPPQPHPPPPQQQHKEEMAAEAGEAVASPMDDGFVSLDS
Sbjct: 1 MAATEGVGEAAQGGEPGQPAQPPPQPHPPPPQQQHKEEMAAEAGEAVASPMDDGFVSLDS 60
Query: 61 PSYVLYRHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELE 120
PSYVLYRHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELE
Sbjct: 61 PSYVLYRHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELE 120
Query: 121 FIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNT 180
FIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNT
Sbjct: 121 FIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNT 180
Query: 181 TGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHS 240
TGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHS
Sbjct: 181 TGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHS 240
Query: 241 SPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSKH 300
SPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSKH
Sbjct: 241 SPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSKH 300
Query: 301 STENDSPTNVQQ 312
STENDSPTNVQQ
Sbjct: 301 STENDSPTNVQQ 312
>gi|4503771 farnesyltransferase, CAAX box, alpha isoform a [Homo
sapiens]
Length = 379
Score = 532 bits (1370), Expect = e-151
Identities = 278/380 (73%), Positives = 289/380 (76%), Gaps = 69/380 (18%)
Query: 1 MAATEGVGEAAQGGEPGQPAQP--------PPQPHPPPPQQQHKEEMAAEAGEAVAS--- 49
MAATEGVGEAAQGGEPGQPAQP P Q H + E +A+ + S
Sbjct: 1 MAATEGVGEAAQGGEPGQPAQPPPQPHPPPPQQQHKEEMAAEAGEAVASPMDDGFVSLDS 60
Query: 50 ------------------PMDDG------------------------------------- 54
P +DG
Sbjct: 61 PSYVLYRDRAEWADIDPVPQNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLT 120
Query: 55 --FVSLDSPSYVLYRHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWL 112
+ L++ +Y ++ HFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWL
Sbjct: 121 RDAIELNAANYTVW-HFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWL 179
Query: 113 RDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQ 172
RDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQ
Sbjct: 180 RDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQ 239
Query: 173 RYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQL 232
RYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQL
Sbjct: 240 RYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQL 299
Query: 233 LDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYI 292
LDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYI
Sbjct: 300 LDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYI 359
Query: 293 GRSLQSKHSTENDSPTNVQQ 312
GRSLQSKHSTENDSPTNVQQ
Sbjct: 360 GRSLQSKHSTENDSPTNVQQ 379
>gi|66882524 farnesyltransferase, CAAX box, alpha isoform b [Homo
sapiens]
Length = 288
Score = 511 bits (1317), Expect = e-145
Identities = 247/257 (96%), Positives = 253/257 (98%), Gaps = 1/257 (0%)
Query: 56 VSLDSPSYVLYRHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDP 115
+ L++ +Y ++ HFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDP
Sbjct: 33 IELNAANYTVW-HFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDP 91
Query: 116 SQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYF 175
SQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYF
Sbjct: 92 SQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYF 151
Query: 176 VISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL 235
VISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL
Sbjct: 152 VISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL 211
Query: 236 QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRS 295
QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRS
Sbjct: 212 QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRS 271
Query: 296 LQSKHSTENDSPTNVQQ 312
LQSKHSTENDSPTNVQQ
Sbjct: 272 LQSKHSTENDSPTNVQQ 288
>gi|53828918 Rab geranylgeranyltransferase alpha [Homo sapiens]
Length = 567
Score = 71.6 bits (174), Expect = 8e-13
Identities = 57/217 (26%), Positives = 101/217 (46%), Gaps = 31/217 (14%)
Query: 32 QQQHKEEMAAEAGEAV-----ASPMDDGFVSLDS------PSYVLYRHFRRVLLKSL--Q 78
+++ K ++ A +AV A +D+ + L S P + + RR +L+ L Q
Sbjct: 20 EREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQQLETQ 79
Query: 79 KDLHE-------EMNYITAIIEEQPKNYQVWHHRRVLVEWLRDP--SQELEFIADILNQD 129
K E E+ ++ + + PK+Y WHHR L+ L +P ++ELE A L D
Sbjct: 80 KSPEELAALVKAELGFLESCLRVNPKSYGTWHHRCWLLGRLPEPNWTRELELCARFLEVD 139
Query: 130 AKNYHAWQHRQWVIQEFKLWD-NELQYVDQLLKEDVRNNSVWNQRYFVI--------SNT 180
+N+H W +R++V + + EL + D L+ + N S W+ R ++ S
Sbjct: 140 ERNFHCWDYRRFVATQAAVPPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199
Query: 181 TGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGIL 217
G VL +E++ P+++SAW Y + +L
Sbjct: 200 QGRLPEDVLLKELELVQNAFFTDPNDQSAWFYHRWLL 236
>gi|33469951 Rab geranylgeranyltransferase alpha [Homo sapiens]
Length = 567
Score = 71.6 bits (174), Expect = 8e-13
Identities = 57/217 (26%), Positives = 101/217 (46%), Gaps = 31/217 (14%)
Query: 32 QQQHKEEMAAEAGEAV-----ASPMDDGFVSLDS------PSYVLYRHFRRVLLKSL--Q 78
+++ K ++ A +AV A +D+ + L S P + + RR +L+ L Q
Sbjct: 20 EREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQQLETQ 79
Query: 79 KDLHE-------EMNYITAIIEEQPKNYQVWHHRRVLVEWLRDP--SQELEFIADILNQD 129
K E E+ ++ + + PK+Y WHHR L+ L +P ++ELE A L D
Sbjct: 80 KSPEELAALVKAELGFLESCLRVNPKSYGTWHHRCWLLGRLPEPNWTRELELCARFLEVD 139
Query: 130 AKNYHAWQHRQWVIQEFKLWD-NELQYVDQLLKEDVRNNSVWNQRYFVI--------SNT 180
+N+H W +R++V + + EL + D L+ + N S W+ R ++ S
Sbjct: 140 ERNFHCWDYRRFVATQAAVPPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199
Query: 181 TGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGIL 217
G VL +E++ P+++SAW Y + +L
Sbjct: 200 QGRLPEDVLLKELELVQNAFFTDPNDQSAWFYHRWLL 236
>gi|55770902 opioid growth factor receptor-like 1 [Homo sapiens]
Length = 451
Score = 42.7 bits (99), Expect = 4e-04
Identities = 40/160 (25%), Positives = 62/160 (38%), Gaps = 29/160 (18%)
Query: 6 GVGEAAQGGEPGQPAQPPPQ----PHPPPPQQQHKEEMAAEAG----EAVASPMDDGFVS 57
G G G E QPAQPP Q P P + E AE G EA A P + +
Sbjct: 37 GGGSEGPGQESEQPAQPPEQAGGRPGASPAPDEDAEAAGAEQGGDSTEATAKPKRSFYAA 96
Query: 58 LDSPSY-VLYRHFRRVLLKSLQKDLHEEMN---------YITAIIEEQPKNYQVWHHRRV 107
D Y Y +F+ + ++ +L N YI ++ + +Y+ H
Sbjct: 97 RDLYKYRHQYPNFKDIRYQNDLSNLRFYKNKIPFKPDGVYIEEVLSKWKGDYEKLEHNHT 156
Query: 108 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFK 147
++WL L + N++A + + I+EFK
Sbjct: 157 YIQWLFP-----------LREQGLNFYAKELTTYEIEEFK 185
>gi|38683860 insulin receptor substrate 2 [Homo sapiens]
Length = 1338
Score = 40.0 bits (92), Expect = 0.003
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 2 AATEGVGEAAQGGEPGQPAQPPPQPHPPPPQQQHK---EEMAAEAGEAVASPMDDGFVSL 58
AAT ++ G PPP PHPP P H + ++ + A SP D GF+SL
Sbjct: 441 AATSPGSLSSSSGHGSGSYPPPPGPHPPLPHPLHHGPGQRPSSGSASASGSPSDPGFMSL 500
Query: 59 D 59
D
Sbjct: 501 D 501
>gi|153792604 protein prenyltransferase alpha subunit repeat
containing 1 [Homo sapiens]
Length = 402
Score = 39.7 bits (91), Expect = 0.003
Identities = 46/201 (22%), Positives = 80/201 (39%), Gaps = 48/201 (23%)
Query: 79 KDLHEEMNYITAIIEEQPKNYQVWHHRR-VLVEWLRDPS--------------------- 116
KDLH +T PK+ + W HRR VL + +++ S
Sbjct: 121 KDLHLGKLALTKF----PKSPETWIHRRWVLQQLIQETSLPSFVTKGNLGTIPTERAQRL 176
Query: 117 --QELEFIADILNQDAKNYHAWQHRQWVIQ-----EFKLWDNELQYVDQLLKEDVRNNSV 169
+E+E + + NY+AW HR WV+Q + K+ +EL V ++S
Sbjct: 177 IQEEMEVCGEAAGRYPSNYNAWSHRIWVLQHLAKLDVKILLDELSSTKHWASMHVSDHSG 236
Query: 170 WNQRYFVISNTTGYN--DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPN 227
++ R F++ + D +V+E+ E + P +E A + + P+
Sbjct: 237 FHYRQFLLKSLISQTVIDSSVMEQN-PLRSEPALVPPKDEEA-----AVSTEEPRINLPH 290
Query: 228 LLNQ-------LLDLQPSHSS 241
LL + L+D P H +
Sbjct: 291 LLEEEVEFSTDLIDSYPGHET 311
Score = 35.8 bits (81), Expect = 0.050
Identities = 36/173 (20%), Positives = 69/173 (39%), Gaps = 27/173 (15%)
Query: 61 PSYVLYRHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELE 120
PS+V + + + Q+ + EEM P NY W HR +++ L +++
Sbjct: 157 PSFVTKGNLGTIPTERAQRLIQEEMEVCGEAAGRYPSNYNAWSHRIWVLQHL--AKLDVK 214
Query: 121 FIADILNQDA--KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYF--- 175
+ D L+ + H H + ++F L L+ + V ++SV Q
Sbjct: 215 ILLDELSSTKHWASMHVSDHSGFHYRQFLL--------KSLISQTVIDSSVMEQNPLRSE 266
Query: 176 ------------VISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGI 216
V + N +LE EV+++ ++I P +E+ W + + I
Sbjct: 267 PALVPPKDEEAAVSTEEPRINLPHLLEEEVEFSTDLIDSYPGHETLWCHRRHI 319
Score = 32.0 bits (71), Expect = 0.72
Identities = 35/207 (16%), Positives = 85/207 (41%), Gaps = 30/207 (14%)
Query: 66 YRHFRRVLLKSLQKDLHEE--MNYITAIIEEQPKNYQVWHHRRVLV-EWLRDPSQELEFI 122
Y H + +L ++ ++ L+ + ++ ++ P W+ R+ L+ +P ++L
Sbjct: 67 YVHNKLLLYRTRKQWLNRDELIDVTCTLLLLNPDFTTAWNVRKELILSGTLNPIKDLHLG 126
Query: 123 ADILNQDAKNYHAWQHRQWVIQEF------------------------KLWDNELQYVDQ 158
L + K+ W HR+WV+Q+ +L E++ +
Sbjct: 127 KLALTKFPKSPETWIHRRWVLQQLIQETSLPSFVTKGNLGTIPTERAQRLIQEEMEVCGE 186
Query: 159 LLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQ 218
N + W+ R +V+ + + + +L+ E+ T + + S ++Y + +L
Sbjct: 187 AAGRYPSNYNAWSHRIWVLQHLAKLDVKILLD-ELSSTKHWASMHVSDHSGFHYRQFLL- 244
Query: 219 DRGLSKYPNLLNQLLDLQPSHSSPYLI 245
+ L + + +++ P S P L+
Sbjct: 245 -KSLISQTVIDSSVMEQNPLRSEPALV 270
>gi|5032187 transducer of ERBB2, 1 [Homo sapiens]
Length = 345
Score = 39.3 bits (90), Expect = 0.005
Identities = 18/36 (50%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 6 GVGEAAQGGEPGQPAQPPPQPHPPPPQQQHKEEMAA 41
G+G Q + QPAQPPP PPPPQQQ +++ +A
Sbjct: 233 GLGSQQQPQQQQQPAQPPPP--PPPPQQQQQQKTSA 266
Score = 29.6 bits (65), Expect = 3.6
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 1 MAATEGVGEAAQGGEPGQPAQPPPQPHPPPPQQQHKEEMAAEA 43
M + G+G +Q + Q Q P QP PPPP Q +++ A
Sbjct: 226 MHSLYGLGLGSQ--QQPQQQQQPAQPPPPPPPPQQQQQQKTSA 266
>gi|239757043 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 996
Score = 37.0 bits (84), Expect = 0.023
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 13 GGEPGQPAQPPPQPHPPPP---QQQHKEEMAAEAGEAVASPMDD 53
G E PA PPP P PPPP Q H + + G + + P +D
Sbjct: 687 GSERHHPAPPPPPPPPPPPPLAQHPHHRGLLSPGGTSCSYPSED 730
>gi|4503825 frizzled 1 [Homo sapiens]
Length = 647
Score = 36.6 bits (83), Expect = 0.029
Identities = 19/42 (45%), Positives = 22/42 (52%)
Query: 6 GVGEAAQGGEPGQPAQPPPQPHPPPPQQQHKEEMAAEAGEAV 47
GV A G PGQ P QP PPP QQQ ++ E G +V
Sbjct: 69 GVRAQAAGQGPGQGPGPGQQPPPPPQQQQSGQQYNGERGISV 110
>gi|9257222 forkhead box O1 [Homo sapiens]
Length = 655
Score = 36.6 bits (83), Expect = 0.029
Identities = 21/49 (42%), Positives = 22/49 (44%)
Query: 2 AATEGVGEAAQGGEPGQPAQPPPQPHPPPPQQQHKEEMAAEAGEAVASP 50
AAT G+ QG E G PPQP PP P QH A AG P
Sbjct: 101 AATGGLCGDFQGPEAGCLHPAPPQPPPPGPLSQHPPVPPAAAGPLAGQP 149
>gi|239751555 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 1252
Score = 36.6 bits (83), Expect = 0.029
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 13 GGEPGQPAQPPPQPHPPPP---QQQHKEEMAAEAGEAVASPMDD 53
G E PA PPP P PPPP Q H + + G + P +D
Sbjct: 687 GSERHHPAPPPPPPPPPPPPLAQHPHHRGLLSPGGTSCCYPSED 730
>gi|239746067 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 1252
Score = 36.6 bits (83), Expect = 0.029
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 13 GGEPGQPAQPPPQPHPPPP---QQQHKEEMAAEAGEAVASPMDD 53
G E PA PPP P PPPP Q H + + G + P +D
Sbjct: 687 GSERHHPAPPPPPPPPPPPPLAQHPHHRGLLSPGGTSCCYPSED 730
>gi|147902746 MEX3A protein [Homo sapiens]
Length = 520
Score = 36.2 bits (82), Expect = 0.038
Identities = 17/26 (65%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Query: 8 GEAAQGGEPGQPAQP--PPQPHPPPP 31
GE GG G PAQP PPQP PPPP
Sbjct: 59 GEDGGGGGGGAPAQPAAPPQPAPPPP 84
Score = 35.0 bits (79), Expect = 0.086
Identities = 17/43 (39%), Positives = 18/43 (41%)
Query: 8 GEAAQGGEPGQPAQPPPQPHPPPPQQQHKEEMAAEAGEAVASP 50
G GG P QPA PP PPPP AA A + P
Sbjct: 62 GGGGGGGAPAQPAAPPQPAPPPPPAAPPAAPTAAPAAQTPQPP 104
Score = 29.3 bits (64), Expect = 4.7
Identities = 13/24 (54%), Positives = 13/24 (54%)
Query: 6 GVGEAAQGGEPGQPAQPPPQPHPP 29
G G AQ P QPA PPP PP
Sbjct: 66 GGGAPAQPAAPPQPAPPPPPAAPP 89
>gi|23503317 coiled-coil domain containing 96 [Homo sapiens]
Length = 555
Score = 36.2 bits (82), Expect = 0.038
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 11/54 (20%)
Query: 1 MAATEGVGEAAQGGEPGQPAQPPPQPHPP----------PPQQQHKEEMAAEAG 44
+ A E GE G EPG+PA+P P+P P P EE+ AEAG
Sbjct: 73 LTAAEAAGEEGPG-EPGRPAEPQPEPEEPAEVGAEEPAQPEPGAGPEELEAEAG 125
>gi|195972805 myocyte enhancer factor 2A isoform 4 [Homo sapiens]
Length = 429
Score = 35.4 bits (80), Expect = 0.066
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 6 GVGEAAQGGEPGQPAQPPPQPHPPPPQQQHKEEMAAEAGEAVAS 49
G + Q + QP PPPQP P PPQ Q ++EM ++++S
Sbjct: 340 GFQQQQQQQQQQQPP-PPPQPQPQPPQPQPRQEMGRSPVDSLSS 382
>gi|195972803 myocyte enhancer factor 2A isoform 3 [Homo sapiens]
Length = 437
Score = 35.4 bits (80), Expect = 0.066
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 6 GVGEAAQGGEPGQPAQPPPQPHPPPPQQQHKEEMAAEAGEAVAS 49
G + Q + QP PPPQP P PPQ Q ++EM ++++S
Sbjct: 348 GFQQQQQQQQQQQPP-PPPQPQPQPPQPQPRQEMGRSPVDSLSS 390
>gi|195972801 myocyte enhancer factor 2A isoform 2 [Homo sapiens]
Length = 497
Score = 35.4 bits (80), Expect = 0.066
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 6 GVGEAAQGGEPGQPAQPPPQPHPPPPQQQHKEEMAAEAGEAVAS 49
G + Q + QP PPPQP P PPQ Q ++EM ++++S
Sbjct: 408 GFQQQQQQQQQQQPP-PPPQPQPQPPQPQPRQEMGRSPVDSLSS 450
>gi|195972799 myocyte enhancer factor 2A isoform 1 [Homo sapiens]
Length = 499
Score = 35.4 bits (80), Expect = 0.066
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 6 GVGEAAQGGEPGQPAQPPPQPHPPPPQQQHKEEMAAEAGEAVAS 49
G + Q + QP PPPQP P PPQ Q ++EM ++++S
Sbjct: 410 GFQQQQQQQQQQQPP-PPPQPQPQPPQPQPRQEMGRSPVDSLSS 452
>gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1059
Score = 35.4 bits (80), Expect = 0.066
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 16 PGQPAQPPPQPHPP----PPQQQHKEEMAAEAGEAVASPMDDGFVSLDSPS 62
PG P QPPPQP PP PPQ K + + + +S S S S
Sbjct: 62 PGPPPQPPPQPPPPQYDYPPQSTFKPKAEVPSSSSSSSSSSSSSSSSSSSS 112
>gi|239753353 PREDICTED: hypothetical protein [Homo sapiens]
Length = 448
Score = 35.4 bits (80), Expect = 0.066
Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 25/94 (26%)
Query: 6 GVGEAAQGGEPGQPAQPPPQPHPPPP--------QQQHKEEMAAEA--GEAVA------- 48
GV + +G +P PA PP P PPPP Q+ E EA GEA+A
Sbjct: 163 GVQQRRRGLQPELPAPLPPLPGPPPPAIRCGTPKSQEAGAETGGEAQGGEALAPGCCSEG 222
Query: 49 -SPMDDGFVSLDSPSYVLYRHFRRVLLKSLQKDL 81
SP+ F++LD R F +L +KDL
Sbjct: 223 ISPLFHIFLNLD-------RRFWNQILTFEEKDL 249
>gi|239747921 PREDICTED: hypothetical protein XP_002346480 [Homo
sapiens]
Length = 448
Score = 35.4 bits (80), Expect = 0.066
Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 25/94 (26%)
Query: 6 GVGEAAQGGEPGQPAQPPPQPHPPPP--------QQQHKEEMAAEA--GEAVA------- 48
GV + +G +P PA PP P PPPP Q+ E EA GEA+A
Sbjct: 163 GVQQRRRGLQPELPAPLPPLPGPPPPAIRCGTPKSQEAGAETGGEAQGGEALAPGCCSEG 222
Query: 49 -SPMDDGFVSLDSPSYVLYRHFRRVLLKSLQKDL 81
SP+ F++LD R F +L +KDL
Sbjct: 223 ISPLFHIFLNLD-------RRFWNQILTFEEKDL 249
>gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1059
Score = 35.4 bits (80), Expect = 0.066
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 16 PGQPAQPPPQPHPP----PPQQQHKEEMAAEAGEAVASPMDDGFVSLDSPS 62
PG P QPPPQP PP PPQ K + + + +S S S S
Sbjct: 62 PGPPPQPPPQPPPPQYDYPPQSTFKPKAEVPSSSSSSSSSSSSSSSSSSSS 112
>gi|239741815 PREDICTED: hypothetical protein XP_002342320 [Homo
sapiens]
Length = 448
Score = 35.4 bits (80), Expect = 0.066
Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 25/94 (26%)
Query: 6 GVGEAAQGGEPGQPAQPPPQPHPPPP--------QQQHKEEMAAEA--GEAVA------- 48
GV + +G +P PA PP P PPPP Q+ E EA GEA+A
Sbjct: 163 GVQQRRRGLQPELPAPLPPLPGPPPPAIRCGTPKSQEAGAETGGEAQGGEALAPGCCSEG 222
Query: 49 -SPMDDGFVSLDSPSYVLYRHFRRVLLKSLQKDL 81
SP+ F++LD R F +L +KDL
Sbjct: 223 ISPLFHIFLNLD-------RRFWNQILTFEEKDL 249
>gi|18426913 drebrin 1 isoform b [Homo sapiens]
Length = 651
Score = 35.4 bits (80), Expect = 0.066
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 8/42 (19%)
Query: 20 AQPPPQPHPPPPQQQHKE--------EMAAEAGEAVASPMDD 53
+QPPP P PPPP Q+ +E E A A +A A PM++
Sbjct: 364 SQPPPLPPPPPPAQETQEPSPILDSEETRAAAPQAWAGPMEE 405
>gi|18426915 drebrin 1 isoform a [Homo sapiens]
Length = 649
Score = 35.4 bits (80), Expect = 0.066
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 8/42 (19%)
Query: 20 AQPPPQPHPPPPQQQHKE--------EMAAEAGEAVASPMDD 53
+QPPP P PPPP Q+ +E E A A +A A PM++
Sbjct: 362 SQPPPLPPPPPPAQETQEPSPILDSEETRAAAPQAWAGPMEE 403
>gi|222144283 hypothetical protein LOC65998 [Homo sapiens]
Length = 678
Score = 35.0 bits (79), Expect = 0.086
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 13 GGEPGQPAQPPPQPHPPPPQQQHKEE 38
G EPG A PPP P PPPP + +E+
Sbjct: 552 GQEPGGLALPPPPPPPPPPPPRSREQ 577
>gi|4507877 vinculin isoform VCL [Homo sapiens]
Length = 1066
Score = 35.0 bits (79), Expect = 0.086
Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 23/74 (31%)
Query: 1 MAATEGVGEAAQGGEPGQPAQPP-----------------------PQPHPPPPQQQHKE 37
+ A V EA Q EP P PP P P PPPP+++ +E
Sbjct: 825 LGAVAKVREAFQPQEPDFPPPPPDLEQLRLTDELAPPKPPLPEGEVPPPRPPPPEEKDEE 884
Query: 38 EMAAEAGEAVASPM 51
+AGE + PM
Sbjct: 885 FPEQKAGEVINQPM 898
>gi|7669550 vinculin isoform meta-VCL [Homo sapiens]
Length = 1134
Score = 35.0 bits (79), Expect = 0.086
Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 23/74 (31%)
Query: 1 MAATEGVGEAAQGGEPGQPAQPP-----------------------PQPHPPPPQQQHKE 37
+ A V EA Q EP P PP P P PPPP+++ +E
Sbjct: 825 LGAVAKVREAFQPQEPDFPPPPPDLEQLRLTDELAPPKPPLPEGEVPPPRPPPPEEKDEE 884
Query: 38 EMAAEAGEAVASPM 51
+AGE + PM
Sbjct: 885 FPEQKAGEVINQPM 898
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.133 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,903,092
Number of Sequences: 37866
Number of extensions: 720311
Number of successful extensions: 14124
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 148
Number of HSP's that attempted gapping in prelim test: 10402
Number of HSP's gapped (non-prelim): 2769
length of query: 312
length of database: 18,247,518
effective HSP length: 102
effective length of query: 210
effective length of database: 14,385,186
effective search space: 3020889060
effective search space used: 3020889060
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.