VCL 35985

Name: VCL	Sequence: fasta or formatted (1134aa)		NCBI GI: 7669550
Description: vinculin isoform meta-VCL		Referenced in: Cadherins and Related Proteins Cytoskeleton Extracellular Matrix RNA-binding Proteins
Other entries for this name: alt prot [1066aa] vinculin isoform VCL
Composition: Amino acid Percentage Count Longest homopolymer A alanine 12.8 145 3 C cysteine 0.9 10 1 D aspartate 6.1 69 2 E glutamate 8.4 95 2 F phenylalanine 1.4 16 1 G glycine 5.2 59 2 H histidine 1.1 12 1 I isoleucine 5.2 59 2 K lysine 6.9 78 2 L leucine 8.7 99 3 M methionine 3.4 38 3 N asparagine 3.5 40 1 P proline 5.6 63 5 Q glutamine 5.7 65 2 R arginine 5.9 67 2 S serine 5.5 62 2 T threonine 5.5 62 3 V valine 6.7 76 2 W tryptophan 0.9 10 1 Y tyrosine 0.8 9 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 vinculin isoform meta-VCL VCL 0.885 vinculin isoform VCL CTNNA2 0.051 catenin, alpha 2 CTNNA1 0.041 catenin, alpha 1 CTNNA3 0.038 catenin, alpha 3 CTNNA3 0.038 catenin, alpha 3 MYH11 0.013 smooth muscle myosin heavy chain 11 isoform SM1A [Ho... MYH11 0.013 smooth muscle myosin heavy chain 11 isoform SM1B [Ho... MYH11 0.013 smooth muscle myosin heavy chain 11 isoform SM2B [Ho... MYH11 0.013 smooth muscle myosin heavy chain 11 isoform SM2A [Ho... PLEC1 0.013 plectin 1 isoform 11 PLEC1 0.013 plectin 1 isoform 10 PLEC1 0.013 plectin 1 isoform 8 PLEC1 0.013 plectin 1 isoform 7 PLEC1 0.013 plectin 1 isoform 6 PLEC1 0.013 plectin 1 isoform 3 PLEC1 0.013 plectin 1 isoform 2 PLEC1 0.013 plectin 1 isoform 1 CCDC158 0.012 coiled-coil domain containing 158 MYH13 0.012 myosin, heavy polypeptide 13, skeletal muscle [Homo... TLN2 0.012 talin 2 MYH2 0.011 myosin, heavy chain 2, skeletal muscle, adult [Homo... MYH2 0.011 myosin, heavy chain 2, skeletal muscle, adult [Homo... MYH10 0.011 myosin, heavy polypeptide 10, non-muscle FMNL1 0.011 formin-like 1 ANKRD24 0.011 ankyrin repeat domain 24 MYH9 0.010 myosin, heavy polypeptide 9, non-muscle MACF1 0.010 microfilament and actin filament cross-linker protei... MACF1 0.010 microfilament and actin filament cross-linker protei... MYH8 0.010 myosin, heavy chain 8, skeletal muscle, perinatal [... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.