VCL 29663

Name: VCL	Sequence: fasta or formatted (1066aa)		NCBI GI: 4507877
Description: vinculin isoform VCL		Referenced in: Cadherins and Related Proteins Cytoskeleton Extracellular Matrix RNA-binding Proteins
Other entries for this name: alt prot [1134aa] vinculin isoform meta-VCL
Composition: Amino acid Percentage Count Longest homopolymer A alanine 12.5 133 3 C cysteine 0.9 10 1 D aspartate 6.0 64 2 E glutamate 8.3 89 2 F phenylalanine 1.4 15 1 G glycine 5.2 55 2 H histidine 1.0 11 1 I isoleucine 5.3 56 2 K lysine 7.1 76 2 L leucine 8.8 94 3 M methionine 3.4 36 3 N asparagine 3.6 38 1 P proline 5.1 54 5 Q glutamine 5.8 62 2 R arginine 6.2 66 2 S serine 5.4 58 2 T threonine 5.7 61 3 V valine 6.7 71 2 W tryptophan 0.8 9 1 Y tyrosine 0.8 8 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 vinculin isoform VCL VCL 0.944 vinculin isoform meta-VCL CTNNA2 0.082 catenin, alpha 2 CTNNA1 0.077 catenin, alpha 1 CTNNA3 0.073 catenin, alpha 3 CTNNA3 0.073 catenin, alpha 3 MYH13 0.018 myosin, heavy polypeptide 13, skeletal muscle [Homo... MYH11 0.016 smooth muscle myosin heavy chain 11 isoform SM1A [Ho... MYH11 0.016 smooth muscle myosin heavy chain 11 isoform SM1B [Ho... MYH11 0.016 smooth muscle myosin heavy chain 11 isoform SM2B [Ho... MYH11 0.016 smooth muscle myosin heavy chain 11 isoform SM2A [Ho... PLEC1 0.014 plectin 1 isoform 11 PLEC1 0.014 plectin 1 isoform 10 PLEC1 0.014 plectin 1 isoform 8 PLEC1 0.014 plectin 1 isoform 7 PLEC1 0.014 plectin 1 isoform 6 PLEC1 0.014 plectin 1 isoform 3 PLEC1 0.014 plectin 1 isoform 2 PLEC1 0.014 plectin 1 isoform 1 MYH9 0.014 myosin, heavy polypeptide 9, non-muscle MYH7B 0.014 myosin, heavy polypeptide 7B, cardiac muscle, beta ... CCDC158 0.013 coiled-coil domain containing 158 MYH2 0.011 myosin, heavy chain 2, skeletal muscle, adult [Homo... MYH2 0.011 myosin, heavy chain 2, skeletal muscle, adult [Homo... FMNL1 0.011 formin-like 1 ANKRD24 0.011 ankyrin repeat domain 24 MACF1 0.011 microfilament and actin filament cross-linker protei... MACF1 0.011 microfilament and actin filament cross-linker protei... MYH7 0.011 myosin, heavy chain 7, cardiac muscle, beta MYH6 0.011 myosin heavy chain 6 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.