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Search of human proteins with 6678271
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|6678271 TAR DNA binding protein [Homo sapiens]
(414 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|6678271 TAR DNA binding protein [Homo sapiens] 849 0.0
gi|169169162 PREDICTED: similar to hCG1642312 [Homo sapiens] 193 3e-49
gi|169168866 PREDICTED: similar to hCG1642312 [Homo sapiens] 193 3e-49
gi|169169315 PREDICTED: similar to hCG1642312 [Homo sapiens] 193 3e-49
gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b... 124 1e-28
gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform ... 122 5e-28
gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo sap... 122 6e-28
gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo... 119 4e-27
gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a ... 119 7e-27
gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a ... 117 1e-26
gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform ... 117 2e-26
gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b ... 115 6e-26
gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Hom... 115 7e-26
gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Hom... 115 7e-26
gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c ... 114 1e-25
gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isofor... 114 2e-25
gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d ... 112 5e-25
gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform... 112 5e-25
gi|89035135 PREDICTED: similar to heterogeneous nuclear ribonucl... 105 8e-23
gi|89034333 PREDICTED: similar to heterogeneous nuclear ribonucl... 105 8e-23
gi|169203146 PREDICTED: similar to heterogeneous nuclear ribonuc... 103 4e-22
gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo sapi... 96 8e-20
gi|4505255 musashi 1 [Homo sapiens] 95 1e-19
gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens] 94 2e-19
gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens] 94 2e-19
gi|25121993 musashi 2 isoform b [Homo sapiens] 92 9e-19
gi|20373175 musashi 2 isoform a [Homo sapiens] 91 3e-18
gi|55956788 nucleolin [Homo sapiens] 77 3e-14
gi|5729794 CUG triplet repeat, RNA-binding protein 1 isoform 1 [... 69 8e-12
gi|38570081 CUG triplet repeat, RNA-binding protein 1 isoform 2 ... 68 2e-11
>gi|6678271 TAR DNA binding protein [Homo sapiens]
Length = 414
Score = 849 bits (2193), Expect = 0.0
Identities = 414/414 (100%), Positives = 414/414 (100%)
Query: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI
Sbjct: 1 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI 60
Query: 61 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDL 120
LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDL
Sbjct: 61 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDL 120
Query: 121 KEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS 180
KEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS
Sbjct: 121 KEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS 180
Query: 181 KQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIA 240
KQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIA
Sbjct: 181 KQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIA 240
Query: 241 QSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGLG 300
QSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGLG
Sbjct: 241 QSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGLG 300
Query: 301 NNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQ 360
NNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQ
Sbjct: 301 NNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQ 360
Query: 361 REPNQAFGSGNNSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGWGM 414
REPNQAFGSGNNSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGWGM
Sbjct: 361 REPNQAFGSGNNSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGWGM 414
>gi|169169162 PREDICTED: similar to hCG1642312 [Homo sapiens]
Length = 528
Score = 193 bits (490), Expect = 3e-49
Identities = 101/162 (62%), Positives = 123/162 (75%), Gaps = 4/162 (2%)
Query: 74 VVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMV 133
V+ + KDN RK ++TD S A+KVKRAVQKTS L VLGLPWKTTEQDLKEYFSTFGE+LMV
Sbjct: 355 VLTFTKDNYRKREKTDTSLAIKVKRAVQKTSALAVLGLPWKTTEQDLKEYFSTFGEILMV 414
Query: 134 QVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMIDGRWCDCKLPNSKQSQDEPLRSR 191
QVKKD++TG+SKGFGFV F +YETQVK R + DG + KQ+ +E LRS+
Sbjct: 415 QVKKDVRTGYSKGFGFVHFIKYETQVKECHSNIRQIDDG--VTVQFLTLKQTLNETLRSK 472
Query: 192 KVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVT 233
K+FVG CTE M D+L++FF +V+DVFI KPFR FAF+T
Sbjct: 473 KMFVGCCTEIMNSDKLQQFFGHCREVIDVFISKPFRDFAFLT 514
>gi|169168866 PREDICTED: similar to hCG1642312 [Homo sapiens]
Length = 528
Score = 193 bits (490), Expect = 3e-49
Identities = 101/162 (62%), Positives = 123/162 (75%), Gaps = 4/162 (2%)
Query: 74 VVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMV 133
V+ + KDN RK ++TD S A+KVKRAVQKTS L VLGLPWKTTEQDLKEYFSTFGE+LMV
Sbjct: 355 VLTFTKDNYRKREKTDTSLAIKVKRAVQKTSALAVLGLPWKTTEQDLKEYFSTFGEILMV 414
Query: 134 QVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMIDGRWCDCKLPNSKQSQDEPLRSR 191
QVKKD++TG+SKGFGFV F +YETQVK R + DG + KQ+ +E LRS+
Sbjct: 415 QVKKDVRTGYSKGFGFVHFIKYETQVKECHSNIRQIDDG--VTVQFLTLKQTLNETLRSK 472
Query: 192 KVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVT 233
K+FVG CTE M D+L++FF +V+DVFI KPFR FAF+T
Sbjct: 473 KMFVGCCTEIMNSDKLQQFFGHCREVIDVFISKPFRDFAFLT 514
>gi|169169315 PREDICTED: similar to hCG1642312 [Homo sapiens]
Length = 528
Score = 193 bits (490), Expect = 3e-49
Identities = 101/162 (62%), Positives = 123/162 (75%), Gaps = 4/162 (2%)
Query: 74 VVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMV 133
V+ + KDN RK ++TD S A+KVKRAVQKTS L VLGLPWKTTEQDLKEYFSTFGE+LMV
Sbjct: 355 VLTFTKDNYRKREKTDTSLAIKVKRAVQKTSALAVLGLPWKTTEQDLKEYFSTFGEILMV 414
Query: 134 QVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMIDGRWCDCKLPNSKQSQDEPLRSR 191
QVKKD++TG+SKGFGFV F +YETQVK R + DG + KQ+ +E LRS+
Sbjct: 415 QVKKDVRTGYSKGFGFVHFIKYETQVKECHSNIRQIDDG--VTVQFLTLKQTLNETLRSK 472
Query: 192 KVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVT 233
K+FVG CTE M D+L++FF +V+DVFI KPFR FAF+T
Sbjct: 473 KMFVGCCTEIMNSDKLQQFFGHCREVIDVFISKPFRDFAFLT 514
>gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b
[Homo sapiens]
Length = 372
Score = 124 bits (312), Expect = 1e-28
Identities = 110/359 (30%), Positives = 154/359 (42%), Gaps = 56/359 (15%)
Query: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQR 165
L + GL ++TT++ L+ +F +G + V +D T S+GFGFV + E M+ R
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 166 -HMIDGRWCDCKLPNSKQSQDEP---LRSRKVFVGRCTEDMTEDELREFFSQYG--DVMD 219
H +DGR + K S++ P L +K+FVG ED E LR++F QYG +V++
Sbjct: 76 PHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 135
Query: 220 VFIPK---PFRAFAFVTFAD-DQIAQSLCGEDLIIKGISVHISNAEPKH------NSNRQ 269
+ + R FAFVTF D D + + + + + G + + A K +S R
Sbjct: 136 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRG 195
Query: 270 LERSGRFGGNPGG-------------FGNQGGFGNSRGGGA---------GLGNNQGSNM 307
SG FGG GG F +GGFG SRGGG G GN+ G
Sbjct: 196 RSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGGYG- 254
Query: 308 GGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQ-----SGPSGNNQNQGNMQRE 362
GGG + S S +G G S N G SG+N G +
Sbjct: 255 GGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGGGSGSNFGGGGSYND 314
Query: 363 PNQAFGSGNNSYS--GSNSGAAIGWGSASNAGSGSGF------NGGFGSSMDSKSSGWG 413
FG+ NN S G G G S+ G G + GG+G S S S G G
Sbjct: 315 ----FGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGSSSSSSYGSG 369
Score = 47.0 bits (110), Expect = 3e-05
Identities = 58/264 (21%), Positives = 100/264 (37%), Gaps = 33/264 (12%)
Query: 179 NSKQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFI-----PKPFRAFAFVT 233
+ +S EP + RK+F+G + + T++ LR F Q+G + D + K R F FVT
Sbjct: 2 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Query: 234 FAD-DQIAQSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNS 292
+A +++ ++ + G V A + +S R GG +
Sbjct: 62 YATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHL 121
Query: 293 RGGGAGLG--------NNQGSNMGGGMNFGAFSINPAM----------MAAAQAALQSSW 334
R G ++GS G F F + ++ + ++ +
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181
Query: 335 GMMGMLASQQNQSGPSGNNQNQGNMQR--EPNQAFGSGNN-----SYSGSNSGAAIGWGS 387
M ++ +Q G SG+ G N FG G N + GS G G+G
Sbjct: 182 SKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGG--GYGG 239
Query: 388 ASNAGSGSGFNGGFGSSMDSKSSG 411
+ + +G G +GG+G S G
Sbjct: 240 SGDGYNGFGNDGGYGGGGPGYSGG 263
>gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform a
[Homo sapiens]
Length = 332
Score = 122 bits (307), Expect = 5e-28
Identities = 77/242 (31%), Positives = 126/242 (52%), Gaps = 19/242 (7%)
Query: 94 VKVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFT 153
+ + + + V GL W T+++DLK+YF+ FGEV+ +K D TG S+GFGF+ F
Sbjct: 60 INASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFK 119
Query: 154 EYETQVKVMSQR-HMIDGRWCDCKLPNSKQSQDEPLRSRKVFVGRCTEDMTEDELREFFS 212
+ + KV+ Q+ H +DGR D K + + +P+ +K+FVG + TE+++RE+F
Sbjct: 120 DAASVEKVLDQKEHRLDGRVIDPK--KAMAMKKDPV--KKIFVGGLNPEATEEKIREYFG 175
Query: 213 QYGDVMDVFIP-----KPFRAFAFVTFADDQIAQSLCGEDL-IIKGISVHISNAEPKHNS 266
++G++ + +P R F F+TF +++ + + + + G I A+PK
Sbjct: 176 EFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVY 235
Query: 267 NRQLERSGRFG----GNPGGFGNQGGFGNSRGGGAGLGN--NQ--GSNMGGGMNFGAFSI 318
+Q SG G GN G G GG G S+ G GN NQ G G G +G +
Sbjct: 236 QQQQYGSGGRGNRNRGNRGSGGGGGGGGQSQSWNQGYGNYWNQGYGYQQGYGPGYGGYDY 295
Query: 319 NP 320
+P
Sbjct: 296 SP 297
>gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo
sapiens]
Length = 378
Score = 122 bits (306), Expect = 6e-28
Identities = 106/344 (30%), Positives = 148/344 (43%), Gaps = 42/344 (12%)
Query: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQR 165
L + GL ++TT+ L+E+F +G + V +D +T S+GFGFV ++ E M R
Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCAR 96
Query: 166 -HMIDGRWCDCKLPNSKQSQDEP---LRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVF 221
H +DGR + K S++ +P L +K+FVG ED E LR++F +YG + +
Sbjct: 97 PHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIE 156
Query: 222 IPKPF-----RAFAFVTFAD-DQIAQSLCGEDLIIKGISVHISNAEPKHN---------- 265
+ + R FAFVTF D D + + + + I G + + A K
Sbjct: 157 VMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAGSQRGR 216
Query: 266 ---SNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGLGNNQGSNMGGGMNFGAFSINPAM 322
S + R G FGG G FG G FG G G G G ++GS GG + F +
Sbjct: 217 GGGSGNFMGRGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYGGGDGGYNGFGGDGGN 276
Query: 323 MAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQREPNQAFGSGN----------N 372
S G G NQ G G N FG GN
Sbjct: 277 YGGG-PGYSSRGGYGGGGPGYGNQGGGYGGGGGYDGYNEGGN--FGGGNYGGGGNYNDFG 333
Query: 373 SYSG---SNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGWG 413
+YSG SN G G GS SGS + GG+GS S G+G
Sbjct: 334 NYSGQQQSNYGPMKG-GSFGGRSSGSPYGGGYGSG--GGSGGYG 374
Score = 57.4 bits (137), Expect = 2e-08
Identities = 32/106 (30%), Positives = 58/106 (54%), Gaps = 8/106 (7%)
Query: 78 PKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKK 137
PK + D + + VK+ + V G+ T E +L++YF +G++ ++V +
Sbjct: 107 PKRAVSREDSVKPGAHLTVKK-------IFVGGIKEDTEEYNLRDYFEKYGKIETIEVME 159
Query: 138 DLKTGHSKGFGFVRFTEYETQVKVMSQR-HMIDGRWCDCKLPNSKQ 182
D ++G +GF FV F +++T K++ Q+ H I+G C+ K SKQ
Sbjct: 160 DRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQ 205
Score = 48.1 bits (113), Expect = 1e-05
Identities = 64/254 (25%), Positives = 102/254 (40%), Gaps = 44/254 (17%)
Query: 186 EPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFI-----PKPFRAFAFVTFA-DDQI 239
EP + RK+F+G + + T+D LRE F ++G + D + K R F FVT++ +++
Sbjct: 30 EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV 89
Query: 240 AQSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGN-------PGGFGNQGGFGNS 292
++C + G V EPK +R E S + G + GG N
Sbjct: 90 DAAMCARPHKVDGRVV-----EPKRAVSR--EDSVKPGAHLTVKKIFVGGIKEDTEEYNL 142
Query: 293 RGGGAGLG--------NNQGSNMGGGMNFGAF----SINPAMMAAAQAALQSSWGMMGML 340
R G ++ S G F F +++ ++ + + L
Sbjct: 143 RDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKAL 202
Query: 341 ASQQNQSGPSGNNQNQGNMQREPNQAFGSGNNSYSGSNSGAAIG-WGSASNAGSGSGFNG 399
+ Q+ QS +G+ + +G GSGN G N G G +G N G G+ G
Sbjct: 203 SKQEMQS--AGSQRGRGG---------GSGNFMGRGGNFGGGGGNFGRGGNFGGRGGYGG 251
Query: 400 GFGSSMDSKSSGWG 413
G G S S G G
Sbjct: 252 GGGGSRGSYGGGDG 265
Score = 32.3 bits (72), Expect = 0.81
Identities = 35/130 (26%), Positives = 42/130 (32%), Gaps = 51/130 (39%)
Query: 274 GRFGGNPGGFGNQGGFGNSRGGGAGLGNNQGSNMGGGMNFGAFSINPAMMAAAQAALQSS 333
G GG GG G G+ GN G N GGG N+ F
Sbjct: 297 GNQGGGYGGGGGYDGYNEG-------GNFGGGNYGGGGNYNDFG---------------- 333
Query: 334 WGMMGMLASQQNQSGPSGNNQNQGNMQREPNQAFGSGNNSYSGSNSGAAIGWGSASNAGS 393
N SG N G M+ S+ G +SG+ G G S GS
Sbjct: 334 -----------NYSGQ--QQSNYGPMK----------GGSFGGRSSGSPYGGGYGSGGGS 370
Query: 394 GSGFNGGFGS 403
GG+GS
Sbjct: 371 -----GGYGS 375
>gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo
sapiens]
Length = 420
Score = 119 bits (299), Expect = 4e-27
Identities = 93/317 (29%), Positives = 147/317 (46%), Gaps = 44/317 (13%)
Query: 85 MDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHS 144
++E S + + Q + + GL W T+++DL EY S FGEV+ +K D TG S
Sbjct: 129 IEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRS 188
Query: 145 KGFGFVRFTEYETQVKVMS-QRHMIDGRWCDCKLPNSKQSQDEPLRSRKVFVGRCTEDMT 203
+GFGFV F + + KV+ + H +DG+ D K + + ++ P +KVFVG + D +
Sbjct: 189 RGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPP---KKVFVGGLSPDTS 245
Query: 204 EDELREFFSQYGDVMDVFIP-----KPFRAFAFVTFADDQIAQSLCGEDL-IIKGISVHI 257
E++++E+F +G++ ++ +P R F F+T+ D++ + L I I
Sbjct: 246 EEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEI 305
Query: 258 SNAEPK--HNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGLGNNQGSNMGGGMNFGA 315
A+PK + +Q ++ GR G GG G G RG G G NQG N +G
Sbjct: 306 KVAQPKEVYRQQQQQQKGGR-GAAAGGRGGTRG----RGRGQGQNWNQGFNNYYDQGYGN 360
Query: 316 FSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQREPNQAFGSGNNSYS 375
++ S++G QN SG G + N N +G G YS
Sbjct: 361 YN--------------SAYG------GDQNYSGYGGYDYTGYNY---GNYGYGQGYADYS 397
Query: 376 GSNSGAAIGWGSASNAG 392
G S +G AS G
Sbjct: 398 GQQS----TYGKASRGG 410
>gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a
[Homo sapiens]
Length = 320
Score = 119 bits (297), Expect = 7e-27
Identities = 99/324 (30%), Positives = 144/324 (44%), Gaps = 51/324 (15%)
Query: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQR 165
L + GL ++TT++ L+ +F +G + V +D T S+GFGFV + E M+ R
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 166 -HMIDGRWCDCKLPNSKQSQDEP---LRSRKVFVGRCTEDMTEDELREFFSQYG--DVMD 219
H +DGR + K S++ P L +K+FVG ED E LR++F QYG +V++
Sbjct: 76 PHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 135
Query: 220 VFIPK---PFRAFAFVTFAD-DQIAQSLCGEDLIIKGISVHISNAEPKH------NSNRQ 269
+ + R FAFVTF D D + + + + + G + + A K +S R
Sbjct: 136 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRG 195
Query: 270 LERSGRFGGNPGG-------------FGNQGGFGNSRGGGAGLGNNQGSNMGG--GMNFG 314
SG FGG GG F +GGFG SRGGG G+ G N G G NFG
Sbjct: 196 RSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGSNFG 255
Query: 315 AFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQREPNQAFGSGNNSY 374
S+ G +Q + GP GN + +G G +
Sbjct: 256 G---------------GGSYNDFGNYNNQSSNFGP----MKGGNFGGRSSGPYGGGGQYF 296
Query: 375 S-GSNSGAAIGWGSASNAGSGSGF 397
+ N G G S+S+ GSG F
Sbjct: 297 AKPRNQGGYGGSSSSSSYGSGRRF 320
Score = 47.0 bits (110), Expect = 3e-05
Identities = 60/263 (22%), Positives = 101/263 (38%), Gaps = 35/263 (13%)
Query: 179 NSKQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFI-----PKPFRAFAFVT 233
+ +S EP + RK+F+G + + T++ LR F Q+G + D + K R F FVT
Sbjct: 2 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Query: 234 FAD-DQIAQSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNS 292
+A +++ ++ + G V A + +S R GG +
Sbjct: 62 YATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHL 121
Query: 293 RGGGAGLG--------NNQGSNMGGGMNFGAFSINPAM----------MAAAQAALQSSW 334
R G ++GS G F F + ++ + ++ +
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181
Query: 335 GMMGMLASQQNQSGPSGNNQNQGNMQREPNQAFGSGNNSYSGSNSGAAIGWGSASN---- 390
M ++ +Q G SG+ GN FG +N G N G+G +
Sbjct: 182 SKQEMASASSSQRGRSGS----GNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGY 237
Query: 391 AGSGSGFNGGFGSSMDSKSSGWG 413
GSG G+N GFG+ D + G G
Sbjct: 238 GGSGDGYN-GFGN--DGSNFGGG 257
>gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a
[Homo sapiens]
Length = 355
Score = 117 bits (294), Expect = 1e-26
Identities = 79/248 (31%), Positives = 133/248 (53%), Gaps = 19/248 (7%)
Query: 81 NKRKMDETDASSAVKVKRAVQKTSD---LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKK 137
+K + DE ++S+ + A + + + GL W TT++DLK+YFS FGEV+ +K
Sbjct: 71 SKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKL 130
Query: 138 DLKTGHSKGFGFVRFTEYETQVKVMSQR-HMIDGRWCDCKLPNSKQSQDEPLRSRKVFVG 196
D TG S+GFGFV F E E+ KVM Q+ H ++G+ D K + +++ EP+ +K+FVG
Sbjct: 131 DPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK-EPV--KKIFVG 187
Query: 197 RCTEDMTEDELREFFSQYGDVMDVFIP-----KPFRAFAFVTFADDQIAQSLCGEDLIIK 251
+ D E+++RE+F +G+V + +P R F F+TF +++ + + + K
Sbjct: 188 GLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK----K 243
Query: 252 GISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGLGNNQGSNMGGGM 311
+V +S E K +++ + + G+ GGF G RGGG NQG +
Sbjct: 244 YHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGF---AGRARGRGGGPSQNWNQGYSNYWNQ 300
Query: 312 NFGAFSIN 319
+G + N
Sbjct: 301 GYGNYGYN 308
>gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform b
[Homo sapiens]
Length = 285
Score = 117 bits (292), Expect = 2e-26
Identities = 71/224 (31%), Positives = 117/224 (52%), Gaps = 13/224 (5%)
Query: 94 VKVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFT 153
+ + + + V GL W T+++DLK+YF+ FGEV+ +K D TG S+GFGF+ F
Sbjct: 60 INASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFK 119
Query: 154 EYETQVKVMSQR-HMIDGRWCDCKLPNSKQSQDEPLRSRKVFVGRCTEDMTEDELREFFS 212
+ + KV+ Q+ H +DGR D K + + +P+ +K+FVG + TE+++RE+F
Sbjct: 120 DAASVEKVLDQKEHRLDGRVIDPK--KAMAMKKDPV--KKIFVGGLNPEATEEKIREYFG 175
Query: 213 QYGDVMDVFIP-----KPFRAFAFVTFADDQIAQSLCGEDL-IIKGISVHISNAEPKHNS 266
++G++ + +P R F F+TF +++ + + + + G I A+PK
Sbjct: 176 EFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVY 235
Query: 267 NRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGLGNNQGSNMGGG 310
+Q SG G GN+G G GGG G N S GG
Sbjct: 236 QQQQYGSGGRGNR--NRGNRGSGGGGGGGGQGSTNYGKSQRRGG 277
>gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b
[Homo sapiens]
Length = 336
Score = 115 bits (289), Expect = 6e-26
Identities = 74/220 (33%), Positives = 121/220 (55%), Gaps = 16/220 (7%)
Query: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQR 165
+ + GL W TT++DLK+YFS FGEV+ +K D TG S+GFGFV F E E+ KVM Q+
Sbjct: 80 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 139
Query: 166 -HMIDGRWCDCKLPNSKQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIP- 223
H ++G+ D K + +++ EP+ +K+FVG + D E+++RE+F +G+V + +P
Sbjct: 140 EHKLNGKVIDPKRAKAMKTK-EPV--KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 196
Query: 224 ----KPFRAFAFVTFADDQIAQSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGN 279
R F F+TF +++ + + + K +V +S E K +++ + + G+
Sbjct: 197 DNKTNKRRGFCFITFKEEEPVKKIMEK----KYHNVGLSKCEIKVAMSKEQYQQQQQWGS 252
Query: 280 PGGFGNQGGFGNSRGGGAGLGNNQGSNMGGGMNFGAFSIN 319
GGF G RGGG NQG + +G + N
Sbjct: 253 RGGF---AGRARGRGGGPSQNWNQGYSNYWNQGYGNYGYN 289
Score = 60.8 bits (146), Expect = 2e-09
Identities = 40/117 (34%), Positives = 62/117 (52%), Gaps = 6/117 (5%)
Query: 84 KMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGH 143
K+ + + A+K K V+K + V GL T E+ ++EYF FGEV +++ D KT
Sbjct: 146 KVIDPKRAKAMKTKEPVKK---IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNK 202
Query: 144 SKGFGFVRFTEYETQVKVMSQR-HMIDGRWCDCKLPNSKQ--SQDEPLRSRKVFVGR 197
+GF F+ F E E K+M ++ H + C+ K+ SK+ Q + SR F GR
Sbjct: 203 RRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGR 259
Score = 43.9 bits (102), Expect = 3e-04
Identities = 64/263 (24%), Positives = 96/263 (36%), Gaps = 50/263 (19%)
Query: 176 KLPNSKQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVF-----IPKPFRAFA 230
K+ SK +DE K+F+G + D T+ +L+++FS++G+V+D I R F
Sbjct: 67 KIDASKNEEDEG----KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 122
Query: 231 FVTFADDQIAQSLCGE---DLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQ- 286
FV F + + + + L K I + A +++ G P +
Sbjct: 123 FVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREY 182
Query: 287 -GGFGNSRGGGAGLGNNQGSNMGGGMNFGAFSINPAM---------------------MA 324
GGFG + N +N G F F + M+
Sbjct: 183 FGGFGEVESIELPMDNK--TNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMS 240
Query: 325 AAQAALQSSWGMMGMLA--SQQNQSGPSGN---------NQNQGNMQREPNQAFGSGNNS 373
Q Q WG G A ++ GPS N NQ GN G G
Sbjct: 241 KEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQGYGNYGYNSQGYGGYGGYD 300
Query: 374 YSGSNSGAAIGWGSASNAGSGSG 396
Y+G N+ G+G SN SG G
Sbjct: 301 YTGYNN--YYGYGDYSNQQSGYG 321
>gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Homo
sapiens]
Length = 320
Score = 115 bits (288), Expect = 7e-26
Identities = 98/324 (30%), Positives = 146/324 (45%), Gaps = 51/324 (15%)
Query: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRF-TEYETQVKVMSQ 164
L + GL ++TT++ L+ +F +G + V +D T S+GFGFV + T E + +
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNTT 75
Query: 165 RHMIDGRWCDCKLPNSKQSQDEP---LRSRKVFVGRCTEDMTEDELREFFSQYG--DVMD 219
H +DGR + K S++ P L +K+FVG ED E LR++F QYG +V++
Sbjct: 76 PHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 135
Query: 220 VFIPK---PFRAFAFVTFAD-DQIAQSLCGEDLIIKGISVHISNAEPKH------NSNRQ 269
+ + R FAFVTF D D + + + + +KG + + A PK +S R
Sbjct: 136 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQEMASASSSQRG 195
Query: 270 LERSGRFGGNPG-GFG------------NQGGFGNSRGGGAGLGNNQGSNMGG--GMNFG 314
SG FGG G GFG +GGFG S GGG G+ G N G G NFG
Sbjct: 196 RRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGGSGDGYNGFGNDGSNFG 255
Query: 315 AFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQREPNQAFGSGNNSY 374
S+ G +Q + GP GN + +G G +
Sbjct: 256 G---------------GGSYNDFGNYNNQSSNFGP----MKGGNFGGRSSGPYGGGGQYF 296
Query: 375 SGSNSGAAIGWGSASNA-GSGSGF 397
+ + G S+S++ GSG F
Sbjct: 297 AKPQNQGGYGVSSSSSSYGSGRRF 320
Score = 44.3 bits (103), Expect = 2e-04
Identities = 60/255 (23%), Positives = 96/255 (37%), Gaps = 27/255 (10%)
Query: 183 SQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFI-----PKPFRAFAFVTFAD- 236
S EP + RK+F+G + + T++ LR F Q+G + D + K R F FVT+A
Sbjct: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65
Query: 237 DQIAQSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGG 296
+++ ++ + G V A + +S R GG + R
Sbjct: 66 EEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF 125
Query: 297 AGLG--------NNQGSNMGGGMNFGAF----SINPAMMAAAQAALQSSWGMMGMLASQQ 344
G ++GS G F F S++ ++ + + L Q+
Sbjct: 126 EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQE 185
Query: 345 NQSGPSG--NNQNQGNMQREPNQAFGSGNNSYSGSNSGAAIGWGSASN----AGSGSGFN 398
S S + GN FG +N G N G+G + GSG G+N
Sbjct: 186 MASASSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGGSGDGYN 245
Query: 399 GGFGSSMDSKSSGWG 413
GFG+ D + G G
Sbjct: 246 -GFGN--DGSNFGGG 257
>gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Homo
sapiens]
Length = 320
Score = 115 bits (288), Expect = 7e-26
Identities = 98/324 (30%), Positives = 146/324 (45%), Gaps = 51/324 (15%)
Query: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRF-TEYETQVKVMSQ 164
L + GL ++TT++ L+ +F +G + V +D T S+GFGFV + T E + +
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNTT 75
Query: 165 RHMIDGRWCDCKLPNSKQSQDEP---LRSRKVFVGRCTEDMTEDELREFFSQYG--DVMD 219
H +DGR + K S++ P L +K+FVG ED E LR++F QYG +V++
Sbjct: 76 PHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 135
Query: 220 VFIPK---PFRAFAFVTFAD-DQIAQSLCGEDLIIKGISVHISNAEPKH------NSNRQ 269
+ + R FAFVTF D D + + + + +KG + + A PK +S R
Sbjct: 136 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQEMASASSSQRG 195
Query: 270 LERSGRFGGNPG-GFG------------NQGGFGNSRGGGAGLGNNQGSNMGG--GMNFG 314
SG FGG G GFG +GGFG S GGG G+ G N G G NFG
Sbjct: 196 RRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGGSGDGYNGFGNDGSNFG 255
Query: 315 AFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQREPNQAFGSGNNSY 374
S+ G +Q + GP GN + +G G +
Sbjct: 256 G---------------GGSYNDFGNYNNQSSNFGP----MKGGNFGGRSSGPYGGGGQYF 296
Query: 375 SGSNSGAAIGWGSASNA-GSGSGF 397
+ + G S+S++ GSG F
Sbjct: 297 AKPQNQGGYGVSSSSSSYGSGRRF 320
Score = 44.3 bits (103), Expect = 2e-04
Identities = 60/255 (23%), Positives = 96/255 (37%), Gaps = 27/255 (10%)
Query: 183 SQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFI-----PKPFRAFAFVTFAD- 236
S EP + RK+F+G + + T++ LR F Q+G + D + K R F FVT+A
Sbjct: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65
Query: 237 DQIAQSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGG 296
+++ ++ + G V A + +S R GG + R
Sbjct: 66 EEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF 125
Query: 297 AGLG--------NNQGSNMGGGMNFGAF----SINPAMMAAAQAALQSSWGMMGMLASQQ 344
G ++GS G F F S++ ++ + + L Q+
Sbjct: 126 EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQE 185
Query: 345 NQSGPSG--NNQNQGNMQREPNQAFGSGNNSYSGSNSGAAIGWGSASN----AGSGSGFN 398
S S + GN FG +N G N G+G + GSG G+N
Sbjct: 186 MASASSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGGSGDGYN 245
Query: 399 GGFGSSMDSKSSGWG 413
GFG+ D + G G
Sbjct: 246 -GFGN--DGSNFGGG 257
>gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c
[Homo sapiens]
Length = 306
Score = 114 bits (286), Expect = 1e-25
Identities = 78/241 (32%), Positives = 130/241 (53%), Gaps = 19/241 (7%)
Query: 81 NKRKMDETDASSAVKVKRAVQKTSD---LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKK 137
+K + DE ++S+ + A + + + GL W TT++DLK+YFS FGEV+ +K
Sbjct: 71 SKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKL 130
Query: 138 DLKTGHSKGFGFVRFTEYETQVKVMSQR-HMIDGRWCDCKLPNSKQSQDEPLRSRKVFVG 196
D TG S+GFGFV F E E+ KVM Q+ H ++G+ D K + +++ EP+ +K+FVG
Sbjct: 131 DPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK-EPV--KKIFVG 187
Query: 197 RCTEDMTEDELREFFSQYGDVMDVFIP-----KPFRAFAFVTFADDQIAQSLCGEDLIIK 251
+ D E+++RE+F +G+V + +P R F F+TF +++ + + + K
Sbjct: 188 GLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK----K 243
Query: 252 GISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGLGNNQGSNMGGGM 311
+V +S E K +++ + + G+ GGF G RGG G + S GG
Sbjct: 244 YHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGF---AGRARGRGGDQQSGYGKVSRRGGHQ 300
Query: 312 N 312
N
Sbjct: 301 N 301
>gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isoform
B1 [Homo sapiens]
Length = 353
Score = 114 bits (284), Expect = 2e-25
Identities = 101/337 (29%), Positives = 156/337 (46%), Gaps = 33/337 (9%)
Query: 97 KRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEY- 155
KR ++ L + GL ++TTE+ L+ Y+ +G++ V +D + S+GFGFV F+
Sbjct: 14 KREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMA 73
Query: 156 ETQVKVMSQRHMIDGRWCDCKLPNSKQSQDEP---LRSRKVFVGRCTEDMTEDELREFFS 212
E + ++ H IDGR + K +++ +P + +K+FVG ED E LR++F
Sbjct: 74 EVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFE 133
Query: 213 QYG--DVMDVFIPKPF---RAFAFVTFAD-DQIAQSLCGEDLIIKGISVHISNAEPKHNS 266
+YG D +++ + R F FVTF D D + + + + I G + + A +
Sbjct: 134 EYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEM 193
Query: 267 NR-QLERSGR-----FGGNPGGFGNQG-GFG-NSRGGGAGLGNNQG-----SNMGGGMNF 313
Q RSGR FG + GG GN G G G N RGG G G+ +G + GGG
Sbjct: 194 QEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGG 253
Query: 314 GAFSINPAMMAAAQAALQSSWGMM----GMLASQQNQSGP---SGNNQNQGNMQREPNQA 366
G F +P G G N G SGN + GN ++P+
Sbjct: 254 GNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNY 313
Query: 367 FGSGNNSYSGS-NSGAAIGWGSASNAGSGSGFNGGFG 402
+ ++ GS N G G G+ GSG +GG+G
Sbjct: 314 GPMKSGNFGGSRNMGGPYGGGNYGPGGSGG--SGGYG 348
Score = 43.9 bits (102), Expect = 3e-04
Identities = 63/283 (22%), Positives = 102/283 (36%), Gaps = 59/283 (20%)
Query: 181 KQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFI-----PKPFRAFAFVTFA 235
++ + E + RK+F+G + + TE+ LR ++ Q+G + D + K R F FVTF+
Sbjct: 11 ERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFS 70
Query: 236 D-DQIAQSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGN-------PGGFGNQG 287
++ ++ I G V EPK R E SG+ G + GG
Sbjct: 71 SMAEVDAAMAARPHSIDGRVV-----EPKRAVAR--EESGKPGAHVTVKKLFVGGIKEDT 123
Query: 288 GFGNSRGGGAGLG--------NNQGSNMGGGMNFGAFSINPAM----------MAAAQAA 329
+ R G ++ S G F F + + + A
Sbjct: 124 EEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAE 183
Query: 330 LQSSWGMMGMLASQQNQSGPSGN-------------------NQNQGNMQREPNQAFGSG 370
++ + M Q ++SG GN N G+ + FG G
Sbjct: 184 VRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDG 243
Query: 371 NNSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGWG 413
N Y G G +G + G G G GG G ++ G+G
Sbjct: 244 YNGYGGGPGGG--NFGGSPGYGGGRGGYGGGGPGYGNQGGGYG 284
>gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d
[Homo sapiens]
Length = 287
Score = 112 bits (281), Expect = 5e-25
Identities = 73/213 (34%), Positives = 118/213 (55%), Gaps = 16/213 (7%)
Query: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQR 165
+ + GL W TT++DLK+YFS FGEV+ +K D TG S+GFGFV F E E+ KVM Q+
Sbjct: 80 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 139
Query: 166 -HMIDGRWCDCKLPNSKQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIP- 223
H ++G+ D K + +++ EP+ +K+FVG + D E+++RE+F +G+V + +P
Sbjct: 140 EHKLNGKVIDPKRAKAMKTK-EPV--KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 196
Query: 224 ----KPFRAFAFVTFADDQIAQSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGN 279
R F F+TF +++ + + + K +V +S E K +++ + + G+
Sbjct: 197 DNKTNKRRGFCFITFKEEEPVKKIMEK----KYHNVGLSKCEIKVAMSKEQYQQQQQWGS 252
Query: 280 PGGFGNQGGFGNSRGGGAGLGNNQGSNMGGGMN 312
GGF G RGG G + S GG N
Sbjct: 253 RGGF---AGRARGRGGDQQSGYGKVSRRGGHQN 282
Score = 60.8 bits (146), Expect = 2e-09
Identities = 40/117 (34%), Positives = 62/117 (52%), Gaps = 6/117 (5%)
Query: 84 KMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGH 143
K+ + + A+K K V+K + V GL T E+ ++EYF FGEV +++ D KT
Sbjct: 146 KVIDPKRAKAMKTKEPVKK---IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNK 202
Query: 144 SKGFGFVRFTEYETQVKVMSQR-HMIDGRWCDCKLPNSKQ--SQDEPLRSRKVFVGR 197
+GF F+ F E E K+M ++ H + C+ K+ SK+ Q + SR F GR
Sbjct: 203 RRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGR 259
Score = 38.5 bits (88), Expect = 0.011
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 9/68 (13%)
Query: 176 KLPNSKQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVF-----IPKPFRAFA 230
K+ SK +DE K+F+G + D T+ +L+++FS++G+V+D I R F
Sbjct: 67 KIDASKNEEDEG----KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 122
Query: 231 FVTFADDQ 238
FV F + +
Sbjct: 123 FVLFKESE 130
>gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform A2
[Homo sapiens]
Length = 341
Score = 112 bits (281), Expect = 5e-25
Identities = 100/338 (29%), Positives = 157/338 (46%), Gaps = 33/338 (9%)
Query: 96 VKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEY 155
++R ++ L + GL ++TTE+ L+ Y+ +G++ V +D + S+GFGFV F+
Sbjct: 1 MEREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSM 60
Query: 156 -ETQVKVMSQRHMIDGRWCDCKLPNSKQSQDEP---LRSRKVFVGRCTEDMTEDELREFF 211
E + ++ H IDGR + K +++ +P + +K+FVG ED E LR++F
Sbjct: 61 AEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYF 120
Query: 212 SQYG--DVMDVFIPKPF---RAFAFVTFAD-DQIAQSLCGEDLIIKGISVHISNAEPKHN 265
+YG D +++ + R F FVTF D D + + + + I G + + A +
Sbjct: 121 EEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQE 180
Query: 266 SNR-QLERSGR-----FGGNPGGFGNQG-GFG-NSRGGGAGLGNNQG-----SNMGGGMN 312
Q RSGR FG + GG GN G G G N RGG G G+ +G + GGG
Sbjct: 181 MQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPG 240
Query: 313 FGAFSINPAMMAAAQAALQSSWGMM----GMLASQQNQSGP---SGNNQNQGNMQREPNQ 365
G F +P G G N G SGN + GN ++P+
Sbjct: 241 GGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSN 300
Query: 366 AFGSGNNSYSGS-NSGAAIGWGSASNAGSGSGFNGGFG 402
+ ++ GS N G G G+ GSG +GG+G
Sbjct: 301 YGPMKSGNFGGSRNMGGPYGGGNYGPGGSGG--SGGYG 336
>gi|89035135 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein A1-like [Homo sapiens]
Length = 321
Score = 105 bits (262), Expect = 8e-23
Identities = 96/329 (29%), Positives = 143/329 (43%), Gaps = 60/329 (18%)
Query: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQR 165
L + GL ++T+++ L+ + +G + V +D T S+GFGFV + E M+ R
Sbjct: 16 LFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYVTVEEVDAAMNAR 75
Query: 166 -HMIDGRWCDCKLPNSKQSQDEP---LRSRKVFVGRCTEDMTEDELREFFSQYG--DVMD 219
H + GR + K S++ P L +K+FVG ED E LR+++ QYG +V++
Sbjct: 76 PHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPLRDYYEQYGKTEVIE 135
Query: 220 VFIPK---PFRAFAFVTFAD-DQIAQSLCGEDLIIKGISVHISNAEPKH------NSNRQ 269
+ + R FAFVTF + D + + + I+ G + + A K +S R
Sbjct: 136 IMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKALSKQKMASAPSSQRS 195
Query: 270 LERSGRFGGNPGG-------------FGNQGGFGNSRGGGA----GLGNNQGSNMGGGMN 312
SG FGG GG F GGFG S GG A G GN+ G N GGG
Sbjct: 196 RSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGFGGSHGGSADGYNGFGND-GKNFGGG-- 252
Query: 313 FGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQREPNQAFGSGNN 372
SS+ G +Q + GP GN + + +G G
Sbjct: 253 -------------------SSYNDFGNCNNQSSNFGP----MKGGNFGGKRSCLYGGGGQ 289
Query: 373 SYS-GSNSGAAIGWGSASNAGSGSGFNGG 400
++ N G G S+S+ GSG F G
Sbjct: 290 YFAKPQNQGGYGGSSSSSSYGSGRRFQLG 318
Score = 33.1 bits (74), Expect = 0.47
Identities = 52/254 (20%), Positives = 98/254 (38%), Gaps = 22/254 (8%)
Query: 179 NSKQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVT 233
+ +S EP + RK+F+G + +++ LR Q+G + + + + R F FV
Sbjct: 2 SKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVP 61
Query: 234 FAD-DQIAQSLCGEDLIIKGISVHISNAEPKHNSNR---QLERSGRFGGNPGGFGNQGGF 289
+ +++ ++ + G V A + +S R L F G +
Sbjct: 62 YVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPL 121
Query: 290 GN-----SRGGGAGLGNNQGSNMGGGMNFGAF----SINPAMMAAAQAALQSSWGMMGML 340
+ + + +QGS F F S + ++ + + L
Sbjct: 122 RDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKAL 181
Query: 341 ASQQNQSGPSGNNQNQGNMQREPNQAFG-SGNNSYSGSNSGAAIGWGSASNAGSGSGFNG 399
+ Q+ S PS G+ + G SGN+++ + + G S+ GS G+N
Sbjct: 182 SKQKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGFGGSHGGSADGYN- 240
Query: 400 GFGSSMDSKSSGWG 413
GFG+ D K+ G G
Sbjct: 241 GFGN--DGKNFGGG 252
>gi|89034333 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein A1-like [Homo sapiens]
Length = 321
Score = 105 bits (262), Expect = 8e-23
Identities = 96/329 (29%), Positives = 143/329 (43%), Gaps = 60/329 (18%)
Query: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQR 165
L + GL ++T+++ L+ + +G + V +D T S+GFGFV + E M+ R
Sbjct: 16 LFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYVTVEEVDAAMNAR 75
Query: 166 -HMIDGRWCDCKLPNSKQSQDEP---LRSRKVFVGRCTEDMTEDELREFFSQYG--DVMD 219
H + GR + K S++ P L +K+FVG ED E LR+++ QYG +V++
Sbjct: 76 PHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPLRDYYEQYGKTEVIE 135
Query: 220 VFIPK---PFRAFAFVTFAD-DQIAQSLCGEDLIIKGISVHISNAEPKH------NSNRQ 269
+ + R FAFVTF + D + + + I+ G + + A K +S R
Sbjct: 136 IMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKALSKQKMASAPSSQRS 195
Query: 270 LERSGRFGGNPGG-------------FGNQGGFGNSRGGGA----GLGNNQGSNMGGGMN 312
SG FGG GG F GGFG S GG A G GN+ G N GGG
Sbjct: 196 RSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGFGGSHGGSADGYNGFGND-GKNFGGG-- 252
Query: 313 FGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQREPNQAFGSGNN 372
SS+ G +Q + GP GN + + +G G
Sbjct: 253 -------------------SSYNDFGNCNNQSSNFGP----MKGGNFGGKRSCLYGGGGQ 289
Query: 373 SYS-GSNSGAAIGWGSASNAGSGSGFNGG 400
++ N G G S+S+ GSG F G
Sbjct: 290 YFAKPQNQGGYGGSSSSSSYGSGRRFQLG 318
Score = 33.1 bits (74), Expect = 0.47
Identities = 52/254 (20%), Positives = 98/254 (38%), Gaps = 22/254 (8%)
Query: 179 NSKQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVT 233
+ +S EP + RK+F+G + +++ LR Q+G + + + + R F FV
Sbjct: 2 SKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVP 61
Query: 234 FAD-DQIAQSLCGEDLIIKGISVHISNAEPKHNSNR---QLERSGRFGGNPGGFGNQGGF 289
+ +++ ++ + G V A + +S R L F G +
Sbjct: 62 YVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPL 121
Query: 290 GN-----SRGGGAGLGNNQGSNMGGGMNFGAF----SINPAMMAAAQAALQSSWGMMGML 340
+ + + +QGS F F S + ++ + + L
Sbjct: 122 RDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKAL 181
Query: 341 ASQQNQSGPSGNNQNQGNMQREPNQAFG-SGNNSYSGSNSGAAIGWGSASNAGSGSGFNG 399
+ Q+ S PS G+ + G SGN+++ + + G S+ GS G+N
Sbjct: 182 SKQKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGFGGSHGGSADGYN- 240
Query: 400 GFGSSMDSKSSGWG 413
GFG+ D K+ G G
Sbjct: 241 GFGN--DGKNFGGG 252
>gi|169203146 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein A1-like [Homo sapiens]
Length = 321
Score = 103 bits (256), Expect = 4e-22
Identities = 95/329 (28%), Positives = 142/329 (43%), Gaps = 60/329 (18%)
Query: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQR 165
L + GL ++T+++ L+ + +G + V +D T S+GFGFV + E M+ R
Sbjct: 16 LFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYVTVEEVDAAMNAR 75
Query: 166 -HMIDGRWCDCKLPNSKQSQDEP---LRSRKVFVGRCTEDMTEDELREFFSQYG--DVMD 219
H + GR + K S++ P L +K+FVG ED E LR+++ QYG +V++
Sbjct: 76 PHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPLRDYYEQYGKTEVIE 135
Query: 220 VFIPK---PFRAFAFVTFAD-DQIAQSLCGEDLIIKGISVHISNAEPKH------NSNRQ 269
+ + R FAFVTF + D + + + I+ G + + A K +S R
Sbjct: 136 IMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKALSKQKMASAPSSQRS 195
Query: 270 LERSGRFGGNPGG-------------FGNQGGFGNSRGGGA----GLGNNQGSNMGGGMN 312
SG FGG GG F GG G S GG A G GN+ G N GGG
Sbjct: 196 RSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGLGGSHGGSADGYNGFGND-GKNFGGG-- 252
Query: 313 FGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQREPNQAFGSGNN 372
SS+ G +Q + GP GN + + +G G
Sbjct: 253 -------------------SSYNDFGNCNNQSSNFGP----MKGGNFGGKRSCLYGGGGQ 289
Query: 373 SYS-GSNSGAAIGWGSASNAGSGSGFNGG 400
++ N G G S+S+ GSG F G
Sbjct: 290 YFAKPQNQGGYGGSSSSSSYGSGRRFQLG 318
Score = 32.7 bits (73), Expect = 0.62
Identities = 52/254 (20%), Positives = 98/254 (38%), Gaps = 22/254 (8%)
Query: 179 NSKQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVT 233
+ +S EP + RK+F+G + +++ LR Q+G + + + + R F FV
Sbjct: 2 SKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVP 61
Query: 234 FAD-DQIAQSLCGEDLIIKGISVHISNAEPKHNSNR---QLERSGRFGGNPGGFGNQGGF 289
+ +++ ++ + G V A + +S R L F G +
Sbjct: 62 YVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPL 121
Query: 290 GN-----SRGGGAGLGNNQGSNMGGGMNFGAF----SINPAMMAAAQAALQSSWGMMGML 340
+ + + +QGS F F S + ++ + + L
Sbjct: 122 RDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKAL 181
Query: 341 ASQQNQSGPSGNNQNQGNMQREPNQAFG-SGNNSYSGSNSGAAIGWGSASNAGSGSGFNG 399
+ Q+ S PS G+ + G SGN+++ + + G S+ GS G+N
Sbjct: 182 SKQKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGLGGSHGGSADGYN- 240
Query: 400 GFGSSMDSKSSGWG 413
GFG+ D K+ G G
Sbjct: 241 GFGN--DGKNFGGG 252
>gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo
sapiens]
Length = 305
Score = 95.5 bits (236), Expect = 8e-20
Identities = 85/319 (26%), Positives = 129/319 (40%), Gaps = 44/319 (13%)
Query: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEY-ETQVKVMSQ 164
L + GL +T+E L+ +F FG + V + +T S+ FGFV ++ E + +
Sbjct: 9 LFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAAS 68
Query: 165 RHMIDGRWCDCKLPNSKQSQDEP---LRSRKVFVGRCTEDMTEDELREFFSQYGDV--MD 219
H +DG + K S++ P + +K+FVG D+ E +L E FSQ+G V +
Sbjct: 69 PHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAE 128
Query: 220 VFIPKPF---RAFAFVTFADDQIAQSLCGEDL-IIKGISVHISNAEPKHN-------SNR 268
+ K R F FV F + A I+G V + A PK +
Sbjct: 129 IIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIYSGGGGGGS 188
Query: 269 QLERSGRFGGNPGGFGNQGGFGNSRGGGAGLGNNQGSNMGGGMNFGAFSINPAMMAAAQA 328
+ R GR G GG +Q G S+GGG G + G GGG + A+ + +
Sbjct: 189 RSSRGGRGGRGRGGGRDQNGL--SKGGGGGYNSYGGYGGGGGGGYNAYGGGGGGSSYGGS 246
Query: 329 ALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQREPNQAFGSGNNSYSGSNSGAAIGWGSA 388
+ +G G + Q+ GP + G G WG
Sbjct: 247 DYGNGFGGFGSYSQHQSSYGPMKS----------------------GGGGGGGGSSWGGR 284
Query: 389 SNAG---SGSGFNGGFGSS 404
SN+G G G GG+G S
Sbjct: 285 SNSGPYRGGYGGGGGYGGS 303
Score = 46.2 bits (108), Expect = 5e-05
Identities = 60/259 (23%), Positives = 90/259 (34%), Gaps = 42/259 (16%)
Query: 192 KVFVGRCTEDMTEDELREFFSQYGDVMDVFI-----PKPFRAFAFVTFADDQIAQS-LCG 245
K+F+G +E LR F +G + D + K R F FVT+++ + A + +
Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67
Query: 246 EDLIIKGISVHISNAEPKHNSNR---QLERSGRFGGNPGGFGNQGG-------FGNSRGG 295
+ G +V + A + +S R + F G G +G FG
Sbjct: 68 SPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKA 127
Query: 296 GAGLGNNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMM----------------GM 339
G G G F F + A AA G G
Sbjct: 128 EIIADKQSGKKRGFG--FVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIYSGGGG 185
Query: 340 LASQQNQSGPSGNNQNQGNMQREPNQAFGSGNNSYSGSNSGAAIGWGSASNAGSGSGFN- 398
S+ ++ G G + G Q ++ G G NSY G G G+ + G GS +
Sbjct: 186 GGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYNAYGGGGGGSSYGG 245
Query: 399 -------GGFGSSMDSKSS 410
GGFGS +SS
Sbjct: 246 SDYGNGFGGFGSYSQHQSS 264
Score = 45.8 bits (107), Expect = 7e-05
Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 12/97 (12%)
Query: 92 SAVKVKRAVQ-----------KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLK 140
+ V++KRAV K L V GL E DL E+FS FG V ++ D +
Sbjct: 75 NTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQ 134
Query: 141 TGHSKGFGFVRFTEYETQVK-VMSQRHMIDGRWCDCK 176
+G +GFGFV F ++ K + + H I G + K
Sbjct: 135 SGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVK 171
>gi|4505255 musashi 1 [Homo sapiens]
Length = 362
Score = 95.1 bits (235), Expect = 1e-19
Identities = 51/146 (34%), Positives = 86/146 (58%), Gaps = 7/146 (4%)
Query: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ- 164
+ + GL W+TT++ L+EYF FGEV V +D T S+GFGFV F + KV++Q
Sbjct: 22 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 81
Query: 165 RHMIDGRWCDCKLPNSKQSQDEPL-RSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFI- 222
RH +D + D K+ +++Q + + R++K+FVG + + T ++++++F Q+G V D +
Sbjct: 82 RHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLM 141
Query: 223 ----PKPFRAFAFVTFADDQIAQSLC 244
R F FVTF + I + +C
Sbjct: 142 FDKTTNRHRGFGFVTFESEDIVEKVC 167
Score = 51.2 bits (121), Expect = 2e-06
Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 5/140 (3%)
Query: 44 RNPVSQCMRGVRLVEGILHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKT 103
R+P+++ RG V + AG ++ + D+K +D A + V +T
Sbjct: 53 RDPLTKRSRGFGFVTFM---DQAGVDKVLAQSRHELDSKT-IDPKVAFPRRAQPKMVTRT 108
Query: 104 SDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS 163
+ V GL TT +D+K+YF FG+V + D T +GFGFV F + KV
Sbjct: 109 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Query: 164 -QRHMIDGRWCDCKLPNSKQ 182
H I+ + +CK K+
Sbjct: 169 IHFHEINNKMVECKKAQPKE 188
Score = 41.6 bits (96), Expect = 0.001
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 183 SQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFI-----PKPFRAFAFVTFAD 236
S D P K+F+G + T++ LRE+F Q+G+V + + K R F FVTF D
Sbjct: 12 SPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD 70
>gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]
Length = 378
Score = 94.0 bits (232), Expect = 2e-19
Identities = 64/186 (34%), Positives = 95/186 (51%), Gaps = 24/186 (12%)
Query: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQR 165
L V GL W TT++ L+ YFS +GEV+ + KD T S+GFGFV+F + V++ R
Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASR 71
Query: 166 -HMIDGRWCDCKLPNSKQSQDEPLR---------------SRKVFVGRCTEDMTEDELRE 209
H +DGR D K + Q E R S K+FVG + E ELRE
Sbjct: 72 PHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELRE 131
Query: 210 FFSQYGDVMDVFI------PKPFRAFAFVTFADDQ-IAQSLCGEDLIIKGISVHISNAEP 262
+F ++G V +V + +P R F F+TF D+Q + Q++ I G V + AEP
Sbjct: 132 YFKKFGVVTEVVMIYDAEKQRP-RGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEP 190
Query: 263 KHNSNR 268
+ + ++
Sbjct: 191 RDSKSQ 196
Score = 43.9 bits (102), Expect = 3e-04
Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 11/110 (10%)
Query: 78 PKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKK 137
PK+ +K +D S K++ + V G+P E +L+EYF FG V V +
Sbjct: 97 PKEGWQKGPRSDNS----------KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIY 146
Query: 138 DLKTGHSKGFGFVRFTEYETQVKVMSQR-HMIDGRWCDCKLPNSKQSQDE 186
D + +GFGF+ F + ++ + ++ H I G+ + K + S+ +
Sbjct: 147 DAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQ 196
Score = 40.0 bits (92), Expect = 0.004
Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 192 KVFVGRCTEDMTEDELREFFSQYGDVMDVFIPK-----PFRAFAFVTFAD 236
K+FVG T++ LR +FSQYG+V+D I K R F FV F D
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD 60
>gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]
Length = 407
Score = 94.0 bits (232), Expect = 2e-19
Identities = 64/186 (34%), Positives = 95/186 (51%), Gaps = 24/186 (12%)
Query: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQR 165
L V GL W TT++ L+ YFS +GEV+ + KD T S+GFGFV+F + V++ R
Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASR 71
Query: 166 -HMIDGRWCDCKLPNSKQSQDEPLR---------------SRKVFVGRCTEDMTEDELRE 209
H +DGR D K + Q E R S K+FVG + E ELRE
Sbjct: 72 PHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELRE 131
Query: 210 FFSQYGDVMDVFI------PKPFRAFAFVTFADDQ-IAQSLCGEDLIIKGISVHISNAEP 262
+F ++G V +V + +P R F F+TF D+Q + Q++ I G V + AEP
Sbjct: 132 YFKKFGVVTEVVMIYDAEKQRP-RGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEP 190
Query: 263 KHNSNR 268
+ + ++
Sbjct: 191 RDSKSQ 196
Score = 43.9 bits (102), Expect = 3e-04
Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 11/110 (10%)
Query: 78 PKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKK 137
PK+ +K +D S K++ + V G+P E +L+EYF FG V V +
Sbjct: 97 PKEGWQKGPRSDNS----------KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIY 146
Query: 138 DLKTGHSKGFGFVRFTEYETQVKVMSQR-HMIDGRWCDCKLPNSKQSQDE 186
D + +GFGF+ F + ++ + ++ H I G+ + K + S+ +
Sbjct: 147 DAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQ 196
Score = 40.0 bits (92), Expect = 0.004
Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 192 KVFVGRCTEDMTEDELREFFSQYGDVMDVFIPK-----PFRAFAFVTFAD 236
K+FVG T++ LR +FSQYG+V+D I K R F FV F D
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD 60
>gi|25121993 musashi 2 isoform b [Homo sapiens]
Length = 251
Score = 92.0 bits (227), Expect = 9e-19
Identities = 47/149 (31%), Positives = 86/149 (57%), Gaps = 7/149 (4%)
Query: 103 TSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVM 162
+S + + GL W+T+ L++YFS FGE+ V +D T S+GFGFV F + + KV+
Sbjct: 16 SSKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVL 75
Query: 163 SQ-RHMIDGRWCDCKLPNSKQSQDEPL-RSRKVFVGRCTEDMTEDELREFFSQYGDVMDV 220
Q H +D + D K+ +++Q + + R++K+FVG + + ++++++F Q+G V D
Sbjct: 76 GQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDA 135
Query: 221 FI-----PKPFRAFAFVTFADDQIAQSLC 244
+ R F FVTF ++ + + +C
Sbjct: 136 MLMFDKTTNRHRGFGFVTFENEDVVEKVC 164
Score = 50.1 bits (118), Expect = 4e-06
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 98 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYET 157
+ V +T + V GL T +D+K+YF FG+V + D T +GFGFV F +
Sbjct: 100 KMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDV 159
Query: 158 QVKVMS-QRHMIDGRWCDCKLPNSKQSQDEP 187
KV H I+ + +CK K+ P
Sbjct: 160 VEKVCEIHFHEINNKMVECKKAQPKEVMFPP 190
Score = 41.6 bits (96), Expect = 0.001
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 190 SRKVFVGRCTEDMTEDELREFFSQYGDVMDVFI-----PKPFRAFAFVTFADDQIAQSLC 244
S K+F+G + + D LR++FS++G++ + + K R F FVTFAD +
Sbjct: 16 SSKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVL 75
Query: 245 GE 246
G+
Sbjct: 76 GQ 77
>gi|20373175 musashi 2 isoform a [Homo sapiens]
Length = 328
Score = 90.5 bits (223), Expect = 3e-18
Identities = 46/146 (31%), Positives = 84/146 (57%), Gaps = 7/146 (4%)
Query: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ- 164
+ + GL W+T+ L++YFS FGE+ V +D T S+GFGFV F + + KV+ Q
Sbjct: 23 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQP 82
Query: 165 RHMIDGRWCDCKLPNSKQSQDEPL-RSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFI- 222
H +D + D K+ +++Q + + R++K+FVG + + ++++++F Q+G V D +
Sbjct: 83 HHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLM 142
Query: 223 ----PKPFRAFAFVTFADDQIAQSLC 244
R F FVTF ++ + + +C
Sbjct: 143 FDKTTNRHRGFGFVTFENEDVVEKVC 168
Score = 50.1 bits (118), Expect = 4e-06
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 98 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYET 157
+ V +T + V GL T +D+K+YF FG+V + D T +GFGFV F +
Sbjct: 104 KMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDV 163
Query: 158 QVKVMS-QRHMIDGRWCDCKLPNSKQSQDEP 187
KV H I+ + +CK K+ P
Sbjct: 164 VEKVCEIHFHEINNKMVECKKAQPKEVMFPP 194
Score = 41.6 bits (96), Expect = 0.001
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Query: 179 NSKQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFI-----PKPFRAFAFVT 233
++ SQ +P K+F+G + + D LR++FS++G++ + + K R F FVT
Sbjct: 12 SANDSQHDP---GKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVT 68
Query: 234 FADDQIAQSLCGE 246
FAD + G+
Sbjct: 69 FADPASVDKVLGQ 81
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 77.0 bits (188), Expect = 3e-14
Identities = 66/221 (29%), Positives = 106/221 (47%), Gaps = 18/221 (8%)
Query: 102 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKV 161
++ L++ L + TE+ L+E F + ++V ++ + G SKG+ F+ F +E +
Sbjct: 484 ESKTLVLSNLSYSATEETLQEVFE---KATFIKVPQN-QNGKSKGYAFIEFASFEDAKEA 539
Query: 162 MSQ--RHMIDGRWCDCKLPNSKQSQDEPLR-SRKVFVGRCTEDMTEDELREFFSQYGDVM 218
++ + I+GR +L + S + + S+ +FV +ED TE+ L+E F G V
Sbjct: 540 LNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSVR 597
Query: 219 DVFIPK----PFRAFAFVTFADDQIAQSL--CGEDLIIKGISVHISNAEPKHNSNRQLER 272
+ + F FV F ++ A++ ED I G V + A+PK
Sbjct: 598 ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGFGGRG 657
Query: 273 SGR--FGGNPGGFGNQGGF-GNSRGGGAGLGNNQGSNMGGG 310
GR FGG GG G +GGF G RGG G G +G GGG
Sbjct: 658 GGRGGFGGRGGGRGGRGGFGGRGRGGFGGRGGFRGGRGGGG 698
Score = 47.4 bits (111), Expect = 2e-05
Identities = 82/355 (23%), Positives = 129/355 (36%), Gaps = 48/355 (13%)
Query: 81 NKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLK 140
N+ K+++ + K + A L+ LP+K T+ +LKE F E+ +V K
Sbjct: 374 NEIKLEKPKGKDSKKERDA----RTLLAKNLPYKVTQDELKEVFEDAAEIRLVS-----K 424
Query: 141 TGHSKGFGFVRFTEYETQVKVMSQRH--MIDGRWCDCKLPNSK-QSQDE--------PLR 189
G SKG ++ F K ++ IDGR K Q+QD
Sbjct: 425 DGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGE 484
Query: 190 SRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKP------FRAFAFVTFA---DDQIA 240
S+ + + + TE+ L+E F + FI P + +AF+ FA D + A
Sbjct: 485 SKTLVLSNLSYSATEETLQEVFEK-----ATFIKVPQNQNGKSKGYAFIEFASFEDAKEA 539
Query: 241 QSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGR-FGGNPGGFGNQGGFGNSRGGGAGL 299
+ C + I+G ++ + P+ + N + + S F + S G
Sbjct: 540 LNSCNK-REIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGSVRA 598
Query: 300 GNNQGSNMGGGMNFGAFSINPAMMA-AAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGN 358
G FG N A AA+ A++ G + + + P G G
Sbjct: 599 RIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMED--GEIDGNKVTLDWAKPKGEGGFGG- 655
Query: 359 MQREPNQAFGSGNNSYSGSNSGAAIGWGSASNAGSG--SGFNGGFGSSMDSKSSG 411
+ G G G G G+G G G GF GG G D K G
Sbjct: 656 ------RGGGRGGFGGRGGGRGGRGGFGGRGRGGFGGRGGFRGGRGGGGDHKPQG 704
>gi|5729794 CUG triplet repeat, RNA-binding protein 1 isoform 1
[Homo sapiens]
Length = 482
Score = 68.9 bits (167), Expect = 8e-12
Identities = 73/341 (21%), Positives = 133/341 (39%), Gaps = 43/341 (12%)
Query: 111 LPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTG--HSKGFGFVRFTEYETQVKVMSQRH-- 166
+P +E+DL+E F +G V + V +D SKG FV F + ++ + H
Sbjct: 23 VPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNM 82
Query: 167 -MIDGRWCDCKLPNSKQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKP 225
++ G ++ + ++ + RK+F+G ++ TE+++R FS +G + + I +
Sbjct: 83 KVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRG 142
Query: 226 ----FRAFAFVTFADDQIAQSL------------CGEDLIIKGISVHISNAEPKHNSNRQ 269
R AFVTF +AQ+ C +++K + + Q
Sbjct: 143 PDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQQLQ 202
Query: 270 LE----RSGRFGGNPGGFGNQG----GFGNSRGGGAGLGNNQGSNMGGGMNFGAFSINPA 321
+ + GN G G L + GG+N A
Sbjct: 203 QQMQQISAASVWGNLAGLNTLGPQYLALLQQTASSGNLNTLSSLHPMGGLNAMQLQNLAA 262
Query: 322 MMAAAQAALQSSWGMMGMLASQ-------QNQSGPSGNNQNQGNMQREPNQAFGSGN--- 371
+ AAA AA + G + S + S PS ++ N N P + G+
Sbjct: 263 LAAAASAAQNTPSGTNALTTSSSPLSVLTSSGSSPSSSSSNSVN----PIASLGALQTLA 318
Query: 372 NSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGW 412
+ +G N G+ G + + SG + G GS+M++ + +
Sbjct: 319 GATAGLNVGSLAGMAALNGGLGSSGLSNGTGSTMEALTQAY 359
Score = 37.0 bits (84), Expect = 0.033
Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 104 SDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRF 152
++L + LP + +QDL + F FG V+ +V D +T SK FGFV +
Sbjct: 397 ANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSY 445
Score = 35.0 bits (79), Expect = 0.12
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 8/58 (13%)
Query: 185 DEP-LRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFI-------PKPFRAFAFVTF 234
D+P L + K+FVG+ +E +LRE F QYG V ++ + P + FVTF
Sbjct: 9 DQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTF 66
>gi|38570081 CUG triplet repeat, RNA-binding protein 1 isoform 2
[Homo sapiens]
Length = 483
Score = 67.8 bits (164), Expect = 2e-11
Identities = 75/343 (21%), Positives = 135/343 (39%), Gaps = 46/343 (13%)
Query: 111 LPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTG--HSKGFGFVRFTEYETQVKVMSQRH-- 166
+P +E+DL+E F +G V + V +D SKG FV F + ++ + H
Sbjct: 23 VPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNM 82
Query: 167 -MIDGRWCDCKLPNSKQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKP 225
++ G ++ + ++ + RK+F+G ++ TE+++R FS +G + + I +
Sbjct: 83 KVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRG 142
Query: 226 ----FRAFAFVTFADDQIAQSL------------CGEDLIIKGISVHISNAEPKHNSNRQ 269
R AFVTF +AQ+ C +++K + + Q
Sbjct: 143 PDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQQLQ 202
Query: 270 LE----RSGRFGGNPGGFGNQG----GFGNSRGGGAGLGNNQGSNMGGGMNFGAFSINPA 321
+ + GN G G L + GG+N A
Sbjct: 203 QQMQQISAASVWGNLAGLNTLGPQYLALLQQTASSGNLNTLSSLHPMGGLNAMQLQNLAA 262
Query: 322 MMAAAQA---------ALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQREPNQAFGSGN- 371
+ AAA A AL +S + +L S S PS ++ N N P + G+
Sbjct: 263 LAAAASAAQNTPSGTNALTTSSSPLSVLTSSAG-SSPSSSSSNSVN----PIASLGALQT 317
Query: 372 --NSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGW 412
+ +G N G+ G + + SG + G GS+M++ + +
Sbjct: 318 LAGATAGLNVGSLAGMAALNGGLGSSGLSNGTGSTMEALTQAY 360
Score = 37.0 bits (84), Expect = 0.033
Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 104 SDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRF 152
++L + LP + +QDL + F FG V+ +V D +T SK FGFV +
Sbjct: 398 ANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSY 446
Score = 35.0 bits (79), Expect = 0.12
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 8/58 (13%)
Query: 185 DEP-LRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFI-------PKPFRAFAFVTF 234
D+P L + K+FVG+ +E +LRE F QYG V ++ + P + FVTF
Sbjct: 9 DQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTF 66
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.132 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,239,850
Number of Sequences: 37866
Number of extensions: 777422
Number of successful extensions: 9074
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 197
Number of HSP's that attempted gapping in prelim test: 3422
Number of HSP's gapped (non-prelim): 2819
length of query: 414
length of database: 18,247,518
effective HSP length: 105
effective length of query: 309
effective length of database: 14,271,588
effective search space: 4409920692
effective search space used: 4409920692
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.