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Search of human proteins with 63478060
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|63478060 PHD finger protein 6 isoform 2 [Homo sapiens]
(312 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|63478060 PHD finger protein 6 isoform 2 [Homo sapiens] 652 0.0
gi|28557677 PHD finger protein 6 isoform 1 [Homo sapiens] 577 e-165
gi|62865858 PHD finger protein 6 isoform 1 [Homo sapiens] 577 e-165
gi|94681065 PHD finger protein 11 isoform a [Homo sapiens] 103 3e-22
gi|94681069 PHD finger protein 11 isoform b [Homo sapiens] 102 3e-22
gi|33620749 G2/M-phase specific E3 ubiquitin ligase [Homo sapiens] 83 4e-16
gi|21361543 PHD finger protein 7 isoform 1 [Homo sapiens] 65 1e-10
gi|27894287 PHD finger protein 7 isoform 2 [Homo sapiens] 65 1e-10
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa... 58 1e-08
gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [... 56 4e-08
gi|91718902 myeloid/lymphoid or mixed-lineage leukemia 3 [Homo s... 52 7e-07
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 52 9e-07
gi|40807477 retinoic acid induced 1 [Homo sapiens] 47 3e-05
gi|31652242 transcription factor 20 isoform 2 [Homo sapiens] 44 1e-04
gi|31652244 transcription factor 20 isoform 1 [Homo sapiens] 44 1e-04
gi|117190334 PHD finger protein 16 [Homo sapiens] 42 7e-04
gi|7662006 PHD finger protein 16 [Homo sapiens] 42 7e-04
gi|19913358 Wolf-Hirschhorn syndrome candidate 1 protein isoform... 36 0.038
gi|19913350 Wolf-Hirschhorn syndrome candidate 1 protein isoform... 36 0.038
gi|19913348 Wolf-Hirschhorn syndrome candidate 1 protein isoform... 36 0.038
gi|109633019 Wolf-Hirschhorn syndrome candidate 1 protein isofor... 36 0.038
gi|238814389 zinc finger, MYND domain containing 11 isoform a [H... 36 0.038
gi|238814387 zinc finger, MYND domain containing 11 isoform b [H... 36 0.038
gi|238814385 zinc finger, MYND domain containing 11 isoform a [H... 36 0.038
gi|19923609 PHD finger protein 17 short isoform [Homo sapiens] 36 0.038
gi|40556393 PHD finger protein 17 long isoform [Homo sapiens] 36 0.038
gi|151301228 formin binding protein 3 [Homo sapiens] 35 0.086
gi|118600973 RNA binding motif protein, X-linked 2 [Homo sapiens] 35 0.11
gi|40556370 PHD finger protein 15 [Homo sapiens] 35 0.11
gi|91206454 hypothetical protein LOC257415 isoform 2 [Homo sapiens] 34 0.15
>gi|63478060 PHD finger protein 6 isoform 2 [Homo sapiens]
Length = 312
Score = 652 bits (1681), Expect = 0.0
Identities = 312/312 (100%), Positives = 312/312 (100%)
Query: 1 MSSSVEQKKGPTRQRKCGFCKSNRDKECGQLLISENQKVAAHHKCMLFSSALVSSHSDNE 60
MSSSVEQKKGPTRQRKCGFCKSNRDKECGQLLISENQKVAAHHKCMLFSSALVSSHSDNE
Sbjct: 1 MSSSVEQKKGPTRQRKCGFCKSNRDKECGQLLISENQKVAAHHKCMLFSSALVSSHSDNE 60
Query: 61 SLGGFSIEDVQKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPS 120
SLGGFSIEDVQKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPS
Sbjct: 61 SLGGFSIEDVQKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPS 120
Query: 121 QGIYMVYCRKHKKTAHNSEAADLEESFNEHELEPSSPKSKKKSRKGRPRKTNFKGLSEDT 180
QGIYMVYCRKHKKTAHNSEAADLEESFNEHELEPSSPKSKKKSRKGRPRKTNFKGLSEDT
Sbjct: 121 QGIYMVYCRKHKKTAHNSEAADLEESFNEHELEPSSPKSKKKSRKGRPRKTNFKGLSEDT 180
Query: 181 RSTSSHGTDEMESSSYRDRSPHRSSPSDTRPKCGFCHVGEEENEARGKLHIFNAKKAAAH 240
RSTSSHGTDEMESSSYRDRSPHRSSPSDTRPKCGFCHVGEEENEARGKLHIFNAKKAAAH
Sbjct: 181 RSTSSHGTDEMESSSYRDRSPHRSSPSDTRPKCGFCHVGEEENEARGKLHIFNAKKAAAH 240
Query: 241 YKCMLFSSGTVQLTTTSRAEFGDFDIKTVLQEIKRGKRMVCSFYICYATLHLICCFKFRV 300
YKCMLFSSGTVQLTTTSRAEFGDFDIKTVLQEIKRGKRMVCSFYICYATLHLICCFKFRV
Sbjct: 241 YKCMLFSSGTVQLTTTSRAEFGDFDIKTVLQEIKRGKRMVCSFYICYATLHLICCFKFRV 300
Query: 301 HPKFIQSSENLK 312
HPKFIQSSENLK
Sbjct: 301 HPKFIQSSENLK 312
>gi|28557677 PHD finger protein 6 isoform 1 [Homo sapiens]
Length = 365
Score = 577 bits (1487), Expect = e-165
Identities = 279/282 (98%), Positives = 280/282 (99%), Gaps = 1/282 (0%)
Query: 1 MSSSVEQKKGPTRQRKCGFCKSNRDKECGQLLISENQKVAAHHKCMLFSSALVSSHSDNE 60
MSSSVEQKKGPTRQRKCGFCKSNRDKECGQLLISENQKVAAHHKCMLFSSALVSSHSDNE
Sbjct: 1 MSSSVEQKKGPTRQRKCGFCKSNRDKECGQLLISENQKVAAHHKCMLFSSALVSSHSDNE 60
Query: 61 SLGGFSIEDVQKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPS 120
SLGGFSIEDVQKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPS
Sbjct: 61 SLGGFSIEDVQKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPS 120
Query: 121 QGIYMVYCRKHKKTAHNSEAADLEESFNEHELEPSSPKSKKKSRKGRPRKTNFKGLSEDT 180
QGIYMVYCRKHKKTAHNSE ADLEESFNEHELEPSSPKSKKKSRKGRPRKTNFKGLSEDT
Sbjct: 121 QGIYMVYCRKHKKTAHNSE-ADLEESFNEHELEPSSPKSKKKSRKGRPRKTNFKGLSEDT 179
Query: 181 RSTSSHGTDEMESSSYRDRSPHRSSPSDTRPKCGFCHVGEEENEARGKLHIFNAKKAAAH 240
RSTSSHGTDEMESSSYRDRSPHRSSPSDTRPKCGFCHVGEEENEARGKLHIFNAKKAAAH
Sbjct: 180 RSTSSHGTDEMESSSYRDRSPHRSSPSDTRPKCGFCHVGEEENEARGKLHIFNAKKAAAH 239
Query: 241 YKCMLFSSGTVQLTTTSRAEFGDFDIKTVLQEIKRGKRMVCS 282
YKCMLFSSGTVQLTTTSRAEFGDFDIKTVLQEIKRGKRM C+
Sbjct: 240 YKCMLFSSGTVQLTTTSRAEFGDFDIKTVLQEIKRGKRMKCT 281
Score = 128 bits (321), Expect = 7e-30
Identities = 67/162 (41%), Positives = 93/162 (57%), Gaps = 9/162 (5%)
Query: 1 MSSSVEQKKGPTRQR------KCGFCKSNRDKE--CGQLLISENQKVAAHHKCMLFSSAL 52
M SS + + P R KCGFC ++ G+L I +K AAH+KCMLFSS
Sbjct: 190 MESSSYRDRSPHRSSPSDTRPKCGFCHVGEEENEARGKLHIFNAKKAAAHYKCMLFSSGT 249
Query: 53 VS-SHSDNESLGGFSIEDVQKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHD 111
V + + G F I+ V +EIKRG ++ C+LC PGATIGC++K C +TYHYHC + D
Sbjct: 250 VQLTTTSRAEFGDFDIKTVLQEIKRGKRMKCTLCSQPGATIGCEIKACVKTYHYHCGVQD 309
Query: 112 KAQIREKPSQGIYMVYCRKHKKTAHNSEAADLEESFNEHELE 153
KA+ E S+GIY +YC+ H E + ES + ++E
Sbjct: 310 KAKYIENMSRGIYKLYCKNHSGNDERDEEDEERESKSRGKVE 351
Score = 60.5 bits (145), Expect = 2e-09
Identities = 37/96 (38%), Positives = 51/96 (53%), Gaps = 9/96 (9%)
Query: 191 MESSSYRDRSPHRSSPSDTRPKCGFCHVGEEENEARGKLHIFNAKKAAAHYKCMLFSSGT 250
M SS + + P R KCGFC ++ G+L I +K AAH+KCMLFSS
Sbjct: 1 MSSSVEQKKGPTRQR------KCGFCKSNRDKE--CGQLLISENQKVAAHHKCMLFSSAL 52
Query: 251 VQLTTTSRAEFGDFDIKTVLQEIKRGKRMVCSFYIC 286
V + + G F I+ V +EIKRG +++CS C
Sbjct: 53 VS-SHSDNESLGGFSIEDVQKEIKRGTKLMCSLCHC 87
>gi|62865858 PHD finger protein 6 isoform 1 [Homo sapiens]
Length = 365
Score = 577 bits (1487), Expect = e-165
Identities = 279/282 (98%), Positives = 280/282 (99%), Gaps = 1/282 (0%)
Query: 1 MSSSVEQKKGPTRQRKCGFCKSNRDKECGQLLISENQKVAAHHKCMLFSSALVSSHSDNE 60
MSSSVEQKKGPTRQRKCGFCKSNRDKECGQLLISENQKVAAHHKCMLFSSALVSSHSDNE
Sbjct: 1 MSSSVEQKKGPTRQRKCGFCKSNRDKECGQLLISENQKVAAHHKCMLFSSALVSSHSDNE 60
Query: 61 SLGGFSIEDVQKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPS 120
SLGGFSIEDVQKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPS
Sbjct: 61 SLGGFSIEDVQKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPS 120
Query: 121 QGIYMVYCRKHKKTAHNSEAADLEESFNEHELEPSSPKSKKKSRKGRPRKTNFKGLSEDT 180
QGIYMVYCRKHKKTAHNSE ADLEESFNEHELEPSSPKSKKKSRKGRPRKTNFKGLSEDT
Sbjct: 121 QGIYMVYCRKHKKTAHNSE-ADLEESFNEHELEPSSPKSKKKSRKGRPRKTNFKGLSEDT 179
Query: 181 RSTSSHGTDEMESSSYRDRSPHRSSPSDTRPKCGFCHVGEEENEARGKLHIFNAKKAAAH 240
RSTSSHGTDEMESSSYRDRSPHRSSPSDTRPKCGFCHVGEEENEARGKLHIFNAKKAAAH
Sbjct: 180 RSTSSHGTDEMESSSYRDRSPHRSSPSDTRPKCGFCHVGEEENEARGKLHIFNAKKAAAH 239
Query: 241 YKCMLFSSGTVQLTTTSRAEFGDFDIKTVLQEIKRGKRMVCS 282
YKCMLFSSGTVQLTTTSRAEFGDFDIKTVLQEIKRGKRM C+
Sbjct: 240 YKCMLFSSGTVQLTTTSRAEFGDFDIKTVLQEIKRGKRMKCT 281
Score = 128 bits (321), Expect = 7e-30
Identities = 67/162 (41%), Positives = 93/162 (57%), Gaps = 9/162 (5%)
Query: 1 MSSSVEQKKGPTRQR------KCGFCKSNRDKE--CGQLLISENQKVAAHHKCMLFSSAL 52
M SS + + P R KCGFC ++ G+L I +K AAH+KCMLFSS
Sbjct: 190 MESSSYRDRSPHRSSPSDTRPKCGFCHVGEEENEARGKLHIFNAKKAAAHYKCMLFSSGT 249
Query: 53 VS-SHSDNESLGGFSIEDVQKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHD 111
V + + G F I+ V +EIKRG ++ C+LC PGATIGC++K C +TYHYHC + D
Sbjct: 250 VQLTTTSRAEFGDFDIKTVLQEIKRGKRMKCTLCSQPGATIGCEIKACVKTYHYHCGVQD 309
Query: 112 KAQIREKPSQGIYMVYCRKHKKTAHNSEAADLEESFNEHELE 153
KA+ E S+GIY +YC+ H E + ES + ++E
Sbjct: 310 KAKYIENMSRGIYKLYCKNHSGNDERDEEDEERESKSRGKVE 351
Score = 60.5 bits (145), Expect = 2e-09
Identities = 37/96 (38%), Positives = 51/96 (53%), Gaps = 9/96 (9%)
Query: 191 MESSSYRDRSPHRSSPSDTRPKCGFCHVGEEENEARGKLHIFNAKKAAAHYKCMLFSSGT 250
M SS + + P R KCGFC ++ G+L I +K AAH+KCMLFSS
Sbjct: 1 MSSSVEQKKGPTRQR------KCGFCKSNRDKE--CGQLLISENQKVAAHHKCMLFSSAL 52
Query: 251 VQLTTTSRAEFGDFDIKTVLQEIKRGKRMVCSFYIC 286
V + + G F I+ V +EIKRG +++CS C
Sbjct: 53 VS-SHSDNESLGGFSIEDVQKEIKRGTKLMCSLCHC 87
>gi|94681065 PHD finger protein 11 isoform a [Homo sapiens]
Length = 331
Score = 103 bits (256), Expect = 3e-22
Identities = 51/134 (38%), Positives = 76/134 (56%), Gaps = 6/134 (4%)
Query: 1 MSSSVEQKKGPTRQRKCGFCKSNRDKECGQLLISENQKVAAHHKCMLFSSALVSSHSDNE 60
+ + V Q +R C C +D E L ++++ +AAH C+L+SS LV D +
Sbjct: 29 LPTGVFQVAEKMEKRTCALCP--KDVEYNVLYFAQSENIAAHENCLLYSSGLVECE-DQD 85
Query: 61 SLG---GFSIEDVQKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIRE 117
L F +E V+KEI+RG KL C CH GAT+GCD+K C++ YH+ CA D A +
Sbjct: 86 PLNPDRSFDVESVKKEIQRGRKLKCKFCHKRGATVGCDLKNCNKNYHFFCAKKDDAVPQS 145
Query: 118 KPSQGIYMVYCRKH 131
+GIY + C++H
Sbjct: 146 DGVRGIYKLLCQQH 159
Score = 41.2 bits (95), Expect = 0.001
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 213 CGFCHVGEEENEARGKLHIFNAKKAAAHYKCMLFSSGTVQLTTTSRAEFG-DFDIKTVLQ 271
C C E N L+ ++ AAH C+L+SSG V+ FD+++V +
Sbjct: 45 CALCPKDVEYNV----LYFAQSENIAAHENCLLYSSGLVECEDQDPLNPDRSFDVESVKK 100
Query: 272 EIKRGKRMVCSF 283
EI+RG+++ C F
Sbjct: 101 EIQRGRKLKCKF 112
>gi|94681069 PHD finger protein 11 isoform b [Homo sapiens]
Length = 292
Score = 102 bits (255), Expect = 3e-22
Identities = 49/121 (40%), Positives = 72/121 (59%), Gaps = 6/121 (4%)
Query: 14 QRKCGFCKSNRDKECGQLLISENQKVAAHHKCMLFSSALVSSHSDNESLG---GFSIEDV 70
+R C C +D E L ++++ +AAH C+L+SS LV D + L F +E V
Sbjct: 3 KRTCALCP--KDVEYNVLYFAQSENIAAHENCLLYSSGLVECE-DQDPLNPDRSFDVESV 59
Query: 71 QKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPSQGIYMVYCRK 130
+KEI+RG KL C CH GAT+GCD+K C++ YH+ CA D A + +GIY + C++
Sbjct: 60 KKEIQRGRKLKCKFCHKRGATVGCDLKNCNKNYHFFCAKKDDAVPQSDGVRGIYKLLCQQ 119
Query: 131 H 131
H
Sbjct: 120 H 120
Score = 41.2 bits (95), Expect = 0.001
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 213 CGFCHVGEEENEARGKLHIFNAKKAAAHYKCMLFSSGTVQLTTTSRAEFG-DFDIKTVLQ 271
C C E N L+ ++ AAH C+L+SSG V+ FD+++V +
Sbjct: 6 CALCPKDVEYNV----LYFAQSENIAAHENCLLYSSGLVECEDQDPLNPDRSFDVESVKK 61
Query: 272 EIKRGKRMVCSF 283
EI+RG+++ C F
Sbjct: 62 EIQRGRKLKCKF 73
>gi|33620749 G2/M-phase specific E3 ubiquitin ligase [Homo sapiens]
Length = 706
Score = 82.8 bits (203), Expect = 4e-16
Identities = 41/129 (31%), Positives = 66/129 (51%), Gaps = 5/129 (3%)
Query: 6 EQKKGPTRQRKCGFCKSNRD--KECGQLLISENQKVAAHHKCMLFSSALVSSHSDNESLG 63
E K G ++ C FC+ + D + G+ E + H+ C+L SS + + E +
Sbjct: 3 ESKPGDSQNLACVFCRKHDDCPNKYGEKKTKEKWNLTVHYYCLLMSSGIWQRGKEEEGVY 62
Query: 64 GFSIEDVQKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPSQGI 123
GF IED++KE+ R +KL C +C GA+IGC C R+YH+ C L + + G
Sbjct: 63 GFLIEDIRKEVNRASKLKCCVCKKNGASIGCVAPRCKRSYHFPCGLQRECIFQ---FTGN 119
Query: 124 YMVYCRKHK 132
+ +C H+
Sbjct: 120 FASFCWDHR 128
Score = 33.9 bits (76), Expect = 0.19
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 202 HRSSPSDTRP-KCGFCHVGEEENEARGKLHIFNAKKAAAHYKCMLFSSGTVQLTTTSRAE 260
+ S P D++ C FC ++ G+ HY C+L SSG Q
Sbjct: 2 NESKPGDSQNLACVFCRKHDDCPNKYGEKKTKEKWNLTVHYYCLLMSSGIWQRGKEEEGV 61
Query: 261 FGDFDIKTVLQEIKRGKRMVC 281
+G F I+ + +E+ R ++ C
Sbjct: 62 YG-FLIEDIRKEVNRASKLKC 81
>gi|21361543 PHD finger protein 7 isoform 1 [Homo sapiens]
Length = 381
Score = 64.7 bits (156), Expect = 1e-10
Identities = 45/146 (30%), Positives = 67/146 (45%), Gaps = 12/146 (8%)
Query: 5 VEQKKGPTRQRKCGFC--KSNRDKECGQLLISENQKVAAHHKCMLFSSALVSSHSDNESL 62
V Q+K P+ C C + ++ G+ L +N ++ H+ C++ SS L N
Sbjct: 22 VTQRK-PSSGPVCWLCLREPGDPEKLGEFLQKDN--ISVHYFCLILSSKLPQRGQSNRGF 78
Query: 63 GGFSIEDVQKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPSQ- 121
GF ED++KE R ++ +C +C GA I C C R +H C Q R SQ
Sbjct: 79 HGFLPEDIKKEAARASRKICFVCKKKGAAINCQKDQCLRNFHLPC-----GQERGCLSQF 133
Query: 122 -GIYMVYCRKHKKTAHNSEAADLEES 146
G Y +C KH+ T + EES
Sbjct: 134 FGEYKSFCDKHRPTQNIQHGHVGEES 159
>gi|27894287 PHD finger protein 7 isoform 2 [Homo sapiens]
Length = 342
Score = 64.7 bits (156), Expect = 1e-10
Identities = 45/146 (30%), Positives = 67/146 (45%), Gaps = 12/146 (8%)
Query: 5 VEQKKGPTRQRKCGFC--KSNRDKECGQLLISENQKVAAHHKCMLFSSALVSSHSDNESL 62
V Q+K P+ C C + ++ G+ L +N ++ H+ C++ SS L N
Sbjct: 22 VTQRK-PSSGPVCWLCLREPGDPEKLGEFLQKDN--ISVHYFCLILSSKLPQRGQSNRGF 78
Query: 63 GGFSIEDVQKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPSQ- 121
GF ED++KE R ++ +C +C GA I C C R +H C Q R SQ
Sbjct: 79 HGFLPEDIKKEAARASRKICFVCKKKGAAINCQKDQCLRNFHLPC-----GQERGCLSQF 133
Query: 122 -GIYMVYCRKHKKTAHNSEAADLEES 146
G Y +C KH+ T + EES
Sbjct: 134 FGEYKSFCDKHRPTQNIQHGHVGEES 159
>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
sapiens]
Length = 2715
Score = 57.8 bits (138), Expect = 1e-08
Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 18/121 (14%)
Query: 15 RKCGFCKSNRD---KECGQLL-ISENQKVAAHHKCMLFSSALVSSHSDNESLGGFSIEDV 70
R+C C D KE G+LL I +N+ H C ++S+ + + S+++V
Sbjct: 1579 RQCALCLKYGDADSKEAGRLLYIGQNEWT--HVNCAIWSAEVFEENDG-------SLKNV 1629
Query: 71 QKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPSQGIYMVYCRK 130
+ RG ++ C LC PGAT+GC + +C +H+ CA ++ V+C+K
Sbjct: 1630 HAAVARGRQMRCELCLKPGATVGCCLSSCLSNFHFMCARASYCIFQDDKK-----VFCQK 1684
Query: 131 H 131
H
Sbjct: 1685 H 1685
>gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [Homo
sapiens]
Length = 3969
Score = 56.2 bits (134), Expect = 4e-08
Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 18/135 (13%)
Query: 2 SSSVEQKKGPTRQRKCGFCKSNRD---KECGQLL-ISENQKVAAHHKCMLFSSALVSSHS 57
S + G R+C C + D + G+LL I +N+ H C L+S+ +
Sbjct: 1858 SPELNPPPGIEDNRQCALCLTYGDDSANDAGRLLYIGQNEWT--HVNCALWSAEVFEDDD 1915
Query: 58 DNESLGGFSIEDVQKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIRE 117
S+++V + RG +L C C PGAT+GC + +C YH+ C+ +
Sbjct: 1916 G-------SLKNVHMAVIRGKQLRCEFCQKPGATVGCCLTSCTSNYHFMCSRAKNCVFLD 1968
Query: 118 KPSQGIYMVYCRKHK 132
VYC++H+
Sbjct: 1969 DKK-----VYCQRHR 1978
Score = 29.6 bits (65), Expect = 3.6
Identities = 37/145 (25%), Positives = 55/145 (37%), Gaps = 21/145 (14%)
Query: 144 EESFNEHELEPSSPKSKKKSRKGRPRKTNFKGLSEDTRSTSSHGTDEMESSSYRDR--SP 201
E N H +P P KK +P KG E T H S+ R R SP
Sbjct: 1807 EREENSHTEQP--PLMKKIIPAPKP-----KGPGEPDSPTPLHPPTPPILSTDRSREDSP 1859
Query: 202 HRSSPS--DTRPKCGFCHV-GEEENEARGKLHIFNAKKAAAHYKCMLFSSGTVQLTTTSR 258
+ P + +C C G++ G+L ++ + H C L+S+
Sbjct: 1860 ELNPPPGIEDNRQCALCLTYGDDSANDAGRL-LYIGQNEWTHVNCALWSAEVF------- 1911
Query: 259 AEFGDFDIKTVLQEIKRGKRMVCSF 283
E D +K V + RGK++ C F
Sbjct: 1912 -EDDDGSLKNVHMAVIRGKQLRCEF 1935
>gi|91718902 myeloid/lymphoid or mixed-lineage leukemia 3 [Homo
sapiens]
Length = 4911
Score = 52.0 bits (123), Expect = 7e-07
Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 11/116 (9%)
Query: 1 MSSSVEQKKGPTRQRKCGFCKSNRD--KECGQLLISENQKVAAHHKCMLFSSALVSSHSD 58
+ +S++ P RKC FC D + L++ + + H C L+S+ + + +
Sbjct: 4386 LGTSLKPDPVPKDYRKCCFCHEEGDGLTDGPARLLNLDLDLWVHLNCALWSTEVYETQAG 4445
Query: 59 NESLGGFSIEDVQKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQ 114
++ +V+ ++RG ++ C CH GAT GC C YH+ CA+ KAQ
Sbjct: 4446 -------ALINVELALRRGLQMKCVFCHKTGATSGCHRFRCTNIYHFTCAI--KAQ 4492
Score = 41.2 bits (95), Expect = 0.001
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
Query: 30 QLLISENQKVAAHHKCMLFSSALVSSHSDNESLGGFSIEDVQKEIKRGTKLMCSLCHCPG 89
Q L AHH+C+ +S + + +V K + G+ C+ C G
Sbjct: 240 QALFDSTGTCWAHHRCVEWSLGVCQMEEP-------LLVNVDKAVVSGSTERCAFCKHLG 292
Query: 90 ATIGCDVKTCHRTYHYHCA 108
ATI C + C + YHY CA
Sbjct: 293 ATIKCCEEKCTQMYHYPCA 311
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 51.6 bits (122), Expect = 9e-07
Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 9/114 (7%)
Query: 1 MSSSVEQKKGPTRQRKCGFCKSNRD--KECGQLLISENQKVAAHHKCMLFSSALVSSHSD 58
+ +++ K P R+C FC D + L++ + + H C L+S+ +
Sbjct: 5016 LGTALRPDKVPRDMRRCCFCHEEGDGATDGPARLLNLDLDLWVHLNCALWSTEVY----- 5070
Query: 59 NESLGGFSIEDVQKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDK 112
E+ GG ++ +V+ + RG CSLC GAT C+ C YH+ CA+ K
Sbjct: 5071 -ETQGG-ALMNVEVALHRGLLTKCSLCQRTGATSSCNRMRCPNVYHFACAIRAK 5122
Score = 39.3 bits (90), Expect = 0.005
Identities = 30/101 (29%), Positives = 41/101 (40%), Gaps = 11/101 (10%)
Query: 41 AHHKCMLFSSALVSSHSDNESLGGFSIEDVQKEIKRGTKLMCSLCHCPGATIGCDVKTCH 100
AHH C +S+ + G + V K I G CS C GA+I C C
Sbjct: 138 AHHWCAAWSAGVWGQE-------GPELCGVDKAIFSGISQRCSHCTRLGASIPCRSPGCP 190
Query: 101 RTYHYHCALHDKAQIREKPSQGIYMVYCRKHKKTAHNSEAA 141
R YH+ CA + + K Q + C +H + A E A
Sbjct: 191 RLYHFPCATASGSFLSMKTLQ----LLCPEHSEGAAYLEEA 227
>gi|40807477 retinoic acid induced 1 [Homo sapiens]
Length = 1906
Score = 46.6 bits (109), Expect = 3e-05
Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 70 VQKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPSQGIYMVYCR 129
+Q+ +K +MCS C GATIGC K C TYHY CA E+ + + C
Sbjct: 1845 LQEAMKVAVDMMCSSCQEAGATIGCCHKGCLHTYHYPCASDAGCIFIEEN----FSLKCP 1900
Query: 130 KHKK 133
KHK+
Sbjct: 1901 KHKR 1904
>gi|31652242 transcription factor 20 isoform 2 [Homo sapiens]
Length = 1938
Score = 44.3 bits (103), Expect = 1e-04
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 70 VQKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPSQGIYMVYCR 129
+Q+ ++ ++ CS C GAT+GC K C YHY CA+ + E+ + V C
Sbjct: 1875 LQEALEIAREMKCSHCQEAGATLGCYNKGCSFRYHYPCAIDADCLLHEEN----FSVRCP 1930
Query: 130 KHK 132
KHK
Sbjct: 1931 KHK 1933
>gi|31652244 transcription factor 20 isoform 1 [Homo sapiens]
Length = 1960
Score = 44.3 bits (103), Expect = 1e-04
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 70 VQKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPSQGIYMVYCR 129
+Q+ ++ ++ CS C GAT+GC K C YHY CA+ + E+ + V C
Sbjct: 1875 LQEALEIAREMKCSHCQEAGATLGCYNKGCSFRYHYPCAIDADCLLHEEN----FSVRCP 1930
Query: 130 KHK 132
KHK
Sbjct: 1931 KHK 1933
>gi|117190334 PHD finger protein 16 [Homo sapiens]
Length = 823
Score = 42.0 bits (97), Expect = 7e-04
Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
Query: 80 LMCSLCHCP-GATIGCDVKTCHRTYHYHCALHDKAQIREKPSQG---IYMVYCRKHKKTA 135
L+C+LC GA I C +K+C +H CA +++ +G + YC KH +
Sbjct: 310 LVCNLCKLKTGACIQCSIKSCITAFHVTCAFEHGLEMKTILDEGDEVKFKSYCLKHSQNR 369
Query: 136 HNSEAADLEESFNEHELEPSSPKSKKKSRKGRPRKTNFKGL 176
A+ + + + S K+ +++K R + F L
Sbjct: 370 QKLGEAEYPHHRAKEQSQAKSEKTSLRAQKLRELEEEFYSL 410
>gi|7662006 PHD finger protein 16 [Homo sapiens]
Length = 823
Score = 42.0 bits (97), Expect = 7e-04
Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
Query: 80 LMCSLCHCP-GATIGCDVKTCHRTYHYHCALHDKAQIREKPSQG---IYMVYCRKHKKTA 135
L+C+LC GA I C +K+C +H CA +++ +G + YC KH +
Sbjct: 310 LVCNLCKLKTGACIQCSIKSCITAFHVTCAFEHGLEMKTILDEGDEVKFKSYCLKHSQNR 369
Query: 136 HNSEAADLEESFNEHELEPSSPKSKKKSRKGRPRKTNFKGL 176
A+ + + + S K+ +++K R + F L
Sbjct: 370 QKLGEAEYPHHRAKEQSQAKSEKTSLRAQKLRELEEEFYSL 410
>gi|19913358 Wolf-Hirschhorn syndrome candidate 1 protein isoform 1
[Homo sapiens]
Length = 1365
Score = 36.2 bits (82), Expect = 0.038
Identities = 34/133 (25%), Positives = 48/133 (36%), Gaps = 31/133 (23%)
Query: 73 EIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDK------------AQIREKPS 120
E KR ++ C C G + CD K C + YH C K + KPS
Sbjct: 1233 EGKRQSEDECFRCGDGGQLVLCDRKFCTKAYHLSCLGLGKRPFGKWECPWHHCDVCGKPS 1292
Query: 121 QGIYMV----YCRKHKKTAHNSEAADLEESFNEHEL---------------EPSSPKSKK 161
+ +C++H+ S D EH+L EP PK K+
Sbjct: 1293 TSFCHLCPNSFCKEHQDGTAFSCTPDGRSYCCEHDLGAASVRSTKTEKPPPEPGKPKGKR 1352
Query: 162 KSRKGRPRKTNFK 174
+ R+G R T K
Sbjct: 1353 RRRRGWRRVTEGK 1365
>gi|19913350 Wolf-Hirschhorn syndrome candidate 1 protein isoform 1
[Homo sapiens]
Length = 1365
Score = 36.2 bits (82), Expect = 0.038
Identities = 34/133 (25%), Positives = 48/133 (36%), Gaps = 31/133 (23%)
Query: 73 EIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDK------------AQIREKPS 120
E KR ++ C C G + CD K C + YH C K + KPS
Sbjct: 1233 EGKRQSEDECFRCGDGGQLVLCDRKFCTKAYHLSCLGLGKRPFGKWECPWHHCDVCGKPS 1292
Query: 121 QGIYMV----YCRKHKKTAHNSEAADLEESFNEHEL---------------EPSSPKSKK 161
+ +C++H+ S D EH+L EP PK K+
Sbjct: 1293 TSFCHLCPNSFCKEHQDGTAFSCTPDGRSYCCEHDLGAASVRSTKTEKPPPEPGKPKGKR 1352
Query: 162 KSRKGRPRKTNFK 174
+ R+G R T K
Sbjct: 1353 RRRRGWRRVTEGK 1365
>gi|19913348 Wolf-Hirschhorn syndrome candidate 1 protein isoform 1
[Homo sapiens]
Length = 1365
Score = 36.2 bits (82), Expect = 0.038
Identities = 34/133 (25%), Positives = 48/133 (36%), Gaps = 31/133 (23%)
Query: 73 EIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDK------------AQIREKPS 120
E KR ++ C C G + CD K C + YH C K + KPS
Sbjct: 1233 EGKRQSEDECFRCGDGGQLVLCDRKFCTKAYHLSCLGLGKRPFGKWECPWHHCDVCGKPS 1292
Query: 121 QGIYMV----YCRKHKKTAHNSEAADLEESFNEHEL---------------EPSSPKSKK 161
+ +C++H+ S D EH+L EP PK K+
Sbjct: 1293 TSFCHLCPNSFCKEHQDGTAFSCTPDGRSYCCEHDLGAASVRSTKTEKPPPEPGKPKGKR 1352
Query: 162 KSRKGRPRKTNFK 174
+ R+G R T K
Sbjct: 1353 RRRRGWRRVTEGK 1365
>gi|109633019 Wolf-Hirschhorn syndrome candidate 1 protein isoform 1
[Homo sapiens]
Length = 1365
Score = 36.2 bits (82), Expect = 0.038
Identities = 34/133 (25%), Positives = 48/133 (36%), Gaps = 31/133 (23%)
Query: 73 EIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDK------------AQIREKPS 120
E KR ++ C C G + CD K C + YH C K + KPS
Sbjct: 1233 EGKRQSEDECFRCGDGGQLVLCDRKFCTKAYHLSCLGLGKRPFGKWECPWHHCDVCGKPS 1292
Query: 121 QGIYMV----YCRKHKKTAHNSEAADLEESFNEHEL---------------EPSSPKSKK 161
+ +C++H+ S D EH+L EP PK K+
Sbjct: 1293 TSFCHLCPNSFCKEHQDGTAFSCTPDGRSYCCEHDLGAASVRSTKTEKPPPEPGKPKGKR 1352
Query: 162 KSRKGRPRKTNFK 174
+ R+G R T K
Sbjct: 1353 RRRRGWRRVTEGK 1365
>gi|238814389 zinc finger, MYND domain containing 11 isoform a [Homo
sapiens]
Length = 602
Score = 36.2 bits (82), Expect = 0.038
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 82 CSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPSQGIYMVYCRKHKKTAHNSE 139
C CH PG + CD+ C R YH C L D+ ++R+ S V CR KK N +
Sbjct: 103 CFECHLPGEVLICDL--CFRVYHSKC-LSDEFRLRDSSSPWQCPV-CRSIKKKNTNKQ 156
>gi|238814387 zinc finger, MYND domain containing 11 isoform b [Homo
sapiens]
Length = 567
Score = 36.2 bits (82), Expect = 0.038
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 82 CSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPSQGIYMVYCRKHKKTAHNSE 139
C CH PG + CD+ C R YH C L D+ ++R+ S V CR KK N +
Sbjct: 103 CFECHLPGEVLICDL--CFRVYHSKC-LSDEFRLRDSSSPWQCPV-CRSIKKKNTNKQ 156
>gi|238814385 zinc finger, MYND domain containing 11 isoform a [Homo
sapiens]
Length = 602
Score = 36.2 bits (82), Expect = 0.038
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 82 CSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPSQGIYMVYCRKHKKTAHNSE 139
C CH PG + CD+ C R YH C L D+ ++R+ S V CR KK N +
Sbjct: 103 CFECHLPGEVLICDL--CFRVYHSKC-LSDEFRLRDSSSPWQCPV-CRSIKKKNTNKQ 156
>gi|19923609 PHD finger protein 17 short isoform [Homo sapiens]
Length = 509
Score = 36.2 bits (82), Expect = 0.038
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 80 LMCSLCHCP-GATIGCDVKTCHRTYHYHCALH---DKAQIREKPSQGIYMVYCRKH 131
L+CSLC+ GA+I C VK C +H CA + I + + + YC KH
Sbjct: 313 LVCSLCNEKFGASIQCSVKNCRTAFHVTCAFDRGLEMKTILAENDEVKFKSYCPKH 368
>gi|40556393 PHD finger protein 17 long isoform [Homo sapiens]
Length = 842
Score = 36.2 bits (82), Expect = 0.038
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 80 LMCSLCHCP-GATIGCDVKTCHRTYHYHCALH---DKAQIREKPSQGIYMVYCRKH 131
L+CSLC+ GA+I C VK C +H CA + I + + + YC KH
Sbjct: 313 LVCSLCNEKFGASIQCSVKNCRTAFHVTCAFDRGLEMKTILAENDEVKFKSYCPKH 368
>gi|151301228 formin binding protein 3 [Homo sapiens]
Length = 930
Score = 35.0 bits (79), Expect = 0.086
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 132 KKTAHNSEAADLEESFNEHELEPSSPKSKKKSRKGRPRKTNFKGLSEDTRSTSSHGTDEM 191
KK SE+ E + E E S KSKK +K + R+ K S ++ + E
Sbjct: 815 KKKRQRSESRSASEHSSSAESERSYKKSKKHKKKSKKRR--HKSDSPESDAEREKDKKEK 872
Query: 192 ESSSYRDRSPHRSSPSDTRPK 212
+ S +DR+ RS PK
Sbjct: 873 DRESEKDRTRQRSESKHKSPK 893
Score = 32.7 bits (73), Expect = 0.42
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 149 EHELEPSSPKSKKKSRKGRP--RKTNFKGLSEDTRSTSSHGTDEMESSSYRDRSPHRSSP 206
EHE + K+KK S+K + RK + D+ SH + + S R S H SS
Sbjct: 774 EHECQHHHSKNKKHSKKSKKHHRKRSRSRSGSDSDDDDSHSKKKRQRSESRSASEHSSSA 833
Query: 207 SDTR 210
R
Sbjct: 834 ESER 837
>gi|118600973 RNA binding motif protein, X-linked 2 [Homo sapiens]
Length = 322
Score = 34.7 bits (78), Expect = 0.11
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Query: 133 KTAHNSEAADLEESFNEHELEPSSPKSKKKS---RKGRPRKTNFKGLSEDTRSTSSHGTD 189
+TA++ A DL E EL+ PK + KS R+ R KT + + + SS
Sbjct: 228 RTAYSGGAEDL-----ERELKKEKPKHEHKSSSRREAREEKTRIRDRGRSSDAHSSWYNG 282
Query: 190 EMESSSYRDRSPHR 203
E SYR RS R
Sbjct: 283 RSEGRSYRSRSRSR 296
>gi|40556370 PHD finger protein 15 [Homo sapiens]
Length = 790
Score = 34.7 bits (78), Expect = 0.11
Identities = 27/105 (25%), Positives = 42/105 (40%), Gaps = 15/105 (14%)
Query: 80 LMCSLC-HCPGATIGCDVKTCHRTYHYHCALHDKAQIR---EKPSQGIYMVYCRKHKKTA 135
L CSLC C G I C + +C +H CA ++R + + +C++H
Sbjct: 309 LSCSLCKECTGTCIQCSMPSCVTAFHVTCAFDHGLEMRTILADNDEVKFKSFCQEHSDGG 368
Query: 136 HNSEAADLEESFNEHELEPSSP-KSKKKSRKGRPRKTNFKGLSED 179
NE EP+ P ++ + K RK + L ED
Sbjct: 369 PR----------NEPTSEPTEPSQAGEDLEKVTLRKQRLQQLEED 403
>gi|91206454 hypothetical protein LOC257415 isoform 2 [Homo sapiens]
Length = 237
Score = 34.3 bits (77), Expect = 0.15
Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 11/115 (9%)
Query: 129 RKHKKTAHNSEAADLEESFNEHELEPSSPKSKKKSRKGRPRKTNFKGLSEDTRSTSSH-- 186
+K K +H S + + E+ ++ + S K KKKS+ G ++ + KGLS+ + S
Sbjct: 123 KKKKNRSHKSSESSMSETESDSK---DSLKKKKKSKDGTEKEKDIKGLSKKRKMYSEDKP 179
Query: 187 -GTDEMESSSY-RDRSPHRSSPSDTRPKCGFCHVGEEENEARGKLHIFNAKKAAA 239
++ + S Y + + S+ R K + + + + K H KK AA
Sbjct: 180 LSSESLSESEYIEEVRAKKKKSSEEREKA----TEKTKKKKKHKKHSKKKKKKAA 230
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.130 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,703,476
Number of Sequences: 37866
Number of extensions: 587348
Number of successful extensions: 2658
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 129
Number of HSP's that attempted gapping in prelim test: 2438
Number of HSP's gapped (non-prelim): 325
length of query: 312
length of database: 18,247,518
effective HSP length: 102
effective length of query: 210
effective length of database: 14,385,186
effective search space: 3020889060
effective search space used: 3020889060
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.