Guide to the Human Genome
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Name: PWP1 Sequence: fasta or formatted (501aa) NCBI GI: 5902034
Description:

periodic tryptophan protein 1

Referenced in:

Nucleus and Nucleolus
WD Repeat Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         29           2
 C cysteine            2.0         10           2
 D aspartate          10.0         50           3
 E glutamate           8.0         40           3
 F phenylalanine       3.2         16           1
 G glycine             6.4         32           3
 H histidine           2.2         11           2
 I isoleucine          3.8         19           1
 K lysine              5.6         28           6
 L leucine             9.2         46           2
 M methionine          1.6          8           1
 N asparagine          3.4         17           1
 P proline             4.6         23           1
 Q glutamine           3.0         15           1
 R arginine            4.8         24           2
 S serine             10.6         53           3
 T threonine           4.6         23           1
 V valine              6.8         34           1
 W tryptophan          1.8          9           1
 Y tyrosine            2.8         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   periodic tryptophan protein 1 
WDR24                 0.051   WD repeat domain 24 
SNRNP40               0.048   WD repeat domain 57 (U5 snRNP specific) 
RBBP4                 0.042   retinoblastoma binding protein 4 isoform c 
RBBP4                 0.042   retinoblastoma binding protein 4 isoform b 
RBBP4                 0.042   retinoblastoma binding protein 4 isoform a 
WDR5                  0.042   WD repeat domain 5 
WDR5                  0.042   WD repeat domain 5 
WDR69                 0.042   WD repeat domain 69 
RBBP7                 0.041   retinoblastoma binding protein 7 
GNB4                  0.040   guanine nucleotide-binding protein, beta-4 subunit [...
GNB1                  0.040   guanine nucleotide-binding protein, beta-1 subunit [...
GNB2                  0.040   guanine nucleotide-binding protein, beta-2 subunit [...
FBXW7                 0.038   F-box and WD repeat domain containing 7 isoform 3 [H...
FBXW7                 0.038   F-box and WD repeat domain containing 7 isoform 1 [H...
FBXW7                 0.038   F-box and WD repeat domain containing 7 isoform 2 [H...
WDR61                 0.038   WD repeat domain 61 
THOC3                 0.038   THO complex 3 
WDR12                 0.037   WD repeat domain 12 protein 
SPAG16                0.037   sperm associated antigen 16 isoform 1 
WDR5B                 0.037   WD repeat domain 5B 
BTRC                  0.036   beta-transducin repeat containing protein isoform 2 [...
BTRC                  0.036   beta-transducin repeat containing protein isoform 1 ...
GNB5                  0.036   guanine nucleotide-binding protein, beta-5 subunit is...
GNB5                  0.036   guanine nucleotide-binding protein, beta-5 subunit i...
RFWD2                 0.036   ring finger and WD repeat domain 2 isoform a 
RFWD2                 0.036   ring finger and WD repeat domain 2 isoform d24 [Homo...
CORO1B                0.035   coronin, actin binding protein, 1B 
CORO1B                0.035   coronin, actin binding protein, 1B 
DCAF13                0.034   WD repeats and SOF1 domain containing 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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