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Search of human proteins with 62821796
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|62821796 hypothetical protein LOC154288 [Homo sapiens]
(217 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|62821796 hypothetical protein LOC154288 [Homo sapiens] 427 e-120
gi|122937452 oocyte expressed protein homolog [Homo sapiens] 63 2e-10
gi|70608179 developmental pluripotency associated 5 [Homo sapiens] 60 1e-09
gi|33356174 pinin, desmosome associated protein [Homo sapiens] 36 0.022
gi|157504499 ankyrin repeat domain 47 [Homo sapiens] 34 0.11
gi|28893581 LIM homeobox transcription factor 1, alpha isoform a... 33 0.14
gi|111955162 5-azacytidine induced 1 isoform b [Homo sapiens] 32 0.41
gi|111955084 5-azacytidine induced 1 isoform a [Homo sapiens] 32 0.41
gi|13124879 smooth muscle myosin heavy chain 11 isoform SM1A [Ho... 31 0.92
gi|92091586 smooth muscle myosin heavy chain 11 isoform SM1B [Ho... 31 0.92
gi|92091583 smooth muscle myosin heavy chain 11 isoform SM2B [Ho... 31 0.92
gi|13124875 smooth muscle myosin heavy chain 11 isoform SM2A [Ho... 31 0.92
gi|169881275 phosphorylase kinase, alpha 1 (muscle) isoform 2 [H... 30 1.2
gi|87196600 polyserase 3 [Homo sapiens] 30 1.2
gi|8922071 zinc finger protein 821 [Homo sapiens] 30 1.6
gi|153791497 ciliary rootlet coiled-coil [Homo sapiens] 30 2.1
gi|33620745 pre-mRNA cleavage complex II protein Pcf11 [Homo sap... 30 2.1
gi|21328446 hormone-sensitive lipase [Homo sapiens] 29 2.7
gi|154355000 KH-type splicing regulatory protein [Homo sapiens] 29 2.7
gi|5729953 nuclear distribution gene C homolog [Homo sapiens] 29 2.7
gi|153251878 AP20 region protein isoform B [Homo sapiens] 29 2.7
gi|56606114 trichohyalin-like 1 [Homo sapiens] 29 2.7
gi|222352149 DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 [Homo sap... 28 4.6
gi|116235448 hypothetical protein LOC81610 [Homo sapiens] 28 4.6
gi|5454158 valyl-tRNA synthetase [Homo sapiens] 28 6.0
gi|30026034 solute carrier family 35, member B2 [Homo sapiens] 28 6.0
gi|239757936 PREDICTED: similar to melanoma antigen family A, 5 ... 28 7.8
gi|239752446 PREDICTED: similar to melanoma antigen family A, 5 ... 28 7.8
gi|38569480 megakaryoblastic leukemia 2 protein [Homo sapiens] 28 7.8
gi|217035154 RCSD domain containing 1 [Homo sapiens] 28 7.8
>gi|62821796 hypothetical protein LOC154288 [Homo sapiens]
Length = 217
Score = 427 bits (1098), Expect = e-120
Identities = 217/217 (100%), Positives = 217/217 (100%)
Query: 1 MDAPRRFPTLVQLMQPKAMPVEVLGHLPKRFSWFHSEFLKNPKVVRLEVWLVEKIFGRGG 60
MDAPRRFPTLVQLMQPKAMPVEVLGHLPKRFSWFHSEFLKNPKVVRLEVWLVEKIFGRGG
Sbjct: 1 MDAPRRFPTLVQLMQPKAMPVEVLGHLPKRFSWFHSEFLKNPKVVRLEVWLVEKIFGRGG 60
Query: 61 ERIPHVQGMSQILIHVNRLDPNGEAEILVFGRPSYQEDTIKMIMNLADYHRQLQAKGSGK 120
ERIPHVQGMSQILIHVNRLDPNGEAEILVFGRPSYQEDTIKMIMNLADYHRQLQAKGSGK
Sbjct: 61 ERIPHVQGMSQILIHVNRLDPNGEAEILVFGRPSYQEDTIKMIMNLADYHRQLQAKGSGK 120
Query: 121 ALAQDVATQKAETQRSSIEVREAGTQRSVEVREAGTQRSVEVQEVGTQGSPVEVQEAGTQ 180
ALAQDVATQKAETQRSSIEVREAGTQRSVEVREAGTQRSVEVQEVGTQGSPVEVQEAGTQ
Sbjct: 121 ALAQDVATQKAETQRSSIEVREAGTQRSVEVREAGTQRSVEVQEVGTQGSPVEVQEAGTQ 180
Query: 181 QSLQAANKSGTQRSPEAASKAVTQRFREDARDPVTRL 217
QSLQAANKSGTQRSPEAASKAVTQRFREDARDPVTRL
Sbjct: 181 QSLQAANKSGTQRSPEAASKAVTQRFREDARDPVTRL 217
>gi|122937452 oocyte expressed protein homolog [Homo sapiens]
Length = 149
Score = 62.8 bits (151), Expect = 2e-10
Identities = 32/84 (38%), Positives = 49/84 (58%)
Query: 33 WFHSEFLKNPKVVRLEVWLVEKIFGRGGERIPHVQGMSQILIHVNRLDPNGEAEILVFGR 92
WF + L++P V LE WL +++FG IP ++ SQ L+ V+ +D EI VFGR
Sbjct: 40 WFPVQELRDPLVFYLEAWLADELFGPDRAIIPEMEWTSQALLTVDIVDSGNLVEITVFGR 99
Query: 93 PSYQEDTIKMIMNLADYHRQLQAK 116
P Q M++ LA +HR+ +A+
Sbjct: 100 PRVQNRVKSMLLCLAWFHREHRAR 123
>gi|70608179 developmental pluripotency associated 5 [Homo sapiens]
Length = 116
Score = 60.1 bits (144), Expect = 1e-09
Identities = 27/81 (33%), Positives = 54/81 (66%)
Query: 37 EFLKNPKVVRLEVWLVEKIFGRGGERIPHVQGMSQILIHVNRLDPNGEAEILVFGRPSYQ 96
E LK+P+V +++ L++ IFG G RIP+++ +S+ ++ + L+ + E++V+G Y+
Sbjct: 18 EDLKDPEVFQVQTRLLKAIFGPDGSRIPYIEQVSKAMLELKALESSDLTEVVVYGSYLYK 77
Query: 97 EDTIKMIMNLADYHRQLQAKG 117
T M+ ++A++HRQ Q +G
Sbjct: 78 LRTKWMLQSMAEWHRQRQERG 98
>gi|33356174 pinin, desmosome associated protein [Homo sapiens]
Length = 717
Score = 36.2 bits (82), Expect = 0.022
Identities = 24/88 (27%), Positives = 47/88 (53%), Gaps = 7/88 (7%)
Query: 106 LADYHRQLQAKGSGKAL--AQDVATQKAETQRSSIEVREAGTQRSVEVR---EAG--TQR 158
+ + R++ A G+ + A+ + +A +R S++ +E R+ E + E G QR
Sbjct: 256 IEESQRKMNALFEGRRIEFAEQINKMEARPRRQSMKEKEHQVVRNEEQKAEQEEGKVAQR 315
Query: 159 SVEVQEVGTQGSPVEVQEAGTQQSLQAA 186
E++E G Q + VE++EAG ++ + A
Sbjct: 316 EEELEETGNQHNDVEIEEAGEEEEKEIA 343
>gi|157504499 ankyrin repeat domain 47 [Homo sapiens]
Length = 821
Score = 33.9 bits (76), Expect = 0.11
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 16/108 (14%)
Query: 80 DPNGEAEILVFGRPSYQEDTIKMIMNLADYHRQLQAKGSGKALAQDV--------ATQKA 131
+P+GEAE RP ++ LA R +A+ S +A + D A Q
Sbjct: 232 EPDGEAET----RPDKLAQLRRLTERLATSERGGRARASPRADSPDGLAAGRSEGALQVL 287
Query: 132 ETQRSSIE----VREAGTQRSVEVREAGTQRSVEVQEVGTQGSPVEVQ 175
+ + S++ RE + E REAG Q E +E G + +P V+
Sbjct: 288 DGEVGSLDGTPQTREVAAEAVPETREAGAQAVPETREAGVEAAPETVE 335
>gi|28893581 LIM homeobox transcription factor 1, alpha isoform a
[Homo sapiens]
Length = 382
Score = 33.5 bits (75), Expect = 0.14
Identities = 28/116 (24%), Positives = 47/116 (40%), Gaps = 13/116 (11%)
Query: 115 AKGSGKALAQD-------------VATQKAETQRSSIEVREAGTQRSVEVREAGTQRSVE 161
A G+GK A++ + TQ+ ++S EV ++ E A T SV
Sbjct: 178 AHGAGKGTAEEGKDHKRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVR 237
Query: 162 VQEVGTQGSPVEVQEAGTQQSLQAANKSGTQRSPEAASKAVTQRFREDARDPVTRL 217
V +V Q ++++ +Q Q ++ TQR A + E +P T L
Sbjct: 238 VVQVWFQNQRAKMKKLARRQQQQQQDQQNTQRLSSAQTNGGGSAGMEGIMNPYTAL 293
>gi|111955162 5-azacytidine induced 1 isoform b [Homo sapiens]
Length = 1044
Score = 32.0 bits (71), Expect = 0.41
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Query: 109 YHRQLQAKGSGKALAQDVATQKAETQRSSIEVREAGTQRSVEVREAGTQRSVEVQEVGTQ 168
Y Q+Q +G+G A + + K E QR + GT + ++ +R +E Q
Sbjct: 279 YRHQVQRRGAGAARLEHLLQAKREEQR---QRSGEGTLLDLHQQKEAARRKAR-EEKARQ 334
Query: 169 GSPVEVQEAGTQQSLQAANKSGTQRSP 195
+QE +++L+A S +R P
Sbjct: 335 ARRAAIQELQQKRALRAQKASTAERGP 361
>gi|111955084 5-azacytidine induced 1 isoform a [Homo sapiens]
Length = 1080
Score = 32.0 bits (71), Expect = 0.41
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Query: 109 YHRQLQAKGSGKALAQDVATQKAETQRSSIEVREAGTQRSVEVREAGTQRSVEVQEVGTQ 168
Y Q+Q +G+G A + + K E QR + GT + ++ +R +E Q
Sbjct: 279 YRHQVQRRGAGAARLEHLLQAKREEQR---QRSGEGTLLDLHQQKEAARRKAR-EEKARQ 334
Query: 169 GSPVEVQEAGTQQSLQAANKSGTQRSP 195
+QE +++L+A S +R P
Sbjct: 335 ARRAAIQELQQKRALRAQKASTAERGP 361
>gi|13124879 smooth muscle myosin heavy chain 11 isoform SM1A [Homo
sapiens]
Length = 1972
Score = 30.8 bits (68), Expect = 0.92
Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 3/115 (2%)
Query: 105 NLADYHRQLQAKGSGKALAQDVATQKAETQRSSIEVREA--GTQRSVEVREAGTQRSVEV 162
+L L A + A + AE SS+ R A +R +E R A + +E
Sbjct: 1688 DLMQLQEDLAAAERARKQADLEKEELAEELASSLSGRNALQDEKRRLEARIAQLEEELEE 1747
Query: 163 QEVGTQGSPVEVQEAGTQQSLQAANKSGTQRSPEAASKAVTQRFREDARDPVTRL 217
++ + V++A TQQ+ Q +N+ T+RS +++ Q+ ++ ++L
Sbjct: 1748 EQGNMEAMSDRVRKA-TQQAEQLSNELATERSTAQKNESARQQLERQNKELRSKL 1801
>gi|92091586 smooth muscle myosin heavy chain 11 isoform SM1B [Homo
sapiens]
Length = 1979
Score = 30.8 bits (68), Expect = 0.92
Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 3/115 (2%)
Query: 105 NLADYHRQLQAKGSGKALAQDVATQKAETQRSSIEVREA--GTQRSVEVREAGTQRSVEV 162
+L L A + A + AE SS+ R A +R +E R A + +E
Sbjct: 1695 DLMQLQEDLAAAERARKQADLEKEELAEELASSLSGRNALQDEKRRLEARIAQLEEELEE 1754
Query: 163 QEVGTQGSPVEVQEAGTQQSLQAANKSGTQRSPEAASKAVTQRFREDARDPVTRL 217
++ + V++A TQQ+ Q +N+ T+RS +++ Q+ ++ ++L
Sbjct: 1755 EQGNMEAMSDRVRKA-TQQAEQLSNELATERSTAQKNESARQQLERQNKELRSKL 1808
>gi|92091583 smooth muscle myosin heavy chain 11 isoform SM2B [Homo
sapiens]
Length = 1945
Score = 30.8 bits (68), Expect = 0.92
Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 3/115 (2%)
Query: 105 NLADYHRQLQAKGSGKALAQDVATQKAETQRSSIEVREA--GTQRSVEVREAGTQRSVEV 162
+L L A + A + AE SS+ R A +R +E R A + +E
Sbjct: 1695 DLMQLQEDLAAAERARKQADLEKEELAEELASSLSGRNALQDEKRRLEARIAQLEEELEE 1754
Query: 163 QEVGTQGSPVEVQEAGTQQSLQAANKSGTQRSPEAASKAVTQRFREDARDPVTRL 217
++ + V++A TQQ+ Q +N+ T+RS +++ Q+ ++ ++L
Sbjct: 1755 EQGNMEAMSDRVRKA-TQQAEQLSNELATERSTAQKNESARQQLERQNKELRSKL 1808
>gi|13124875 smooth muscle myosin heavy chain 11 isoform SM2A [Homo
sapiens]
Length = 1938
Score = 30.8 bits (68), Expect = 0.92
Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 3/115 (2%)
Query: 105 NLADYHRQLQAKGSGKALAQDVATQKAETQRSSIEVREA--GTQRSVEVREAGTQRSVEV 162
+L L A + A + AE SS+ R A +R +E R A + +E
Sbjct: 1688 DLMQLQEDLAAAERARKQADLEKEELAEELASSLSGRNALQDEKRRLEARIAQLEEELEE 1747
Query: 163 QEVGTQGSPVEVQEAGTQQSLQAANKSGTQRSPEAASKAVTQRFREDARDPVTRL 217
++ + V++A TQQ+ Q +N+ T+RS +++ Q+ ++ ++L
Sbjct: 1748 EQGNMEAMSDRVRKA-TQQAEQLSNELATERSTAQKNESARQQLERQNKELRSKL 1801
>gi|169881275 phosphorylase kinase, alpha 1 (muscle) isoform 2 [Homo
sapiens]
Length = 1210
Score = 30.4 bits (67), Expect = 1.2
Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 141 REAGTQRSVEVREAGTQRSVEVQEVGTQGSPVEVQEAGTQQSLQAANKSGTQRSPEAAS- 199
+E G +RSV ++ ++ + E+G G+ + Q + GT +P + S
Sbjct: 965 KEFGVERSVRPTDSNVSPAISIHEIGAVGATKTERTGIMQLKSEIKQSPGTSMTPSSGSF 1024
Query: 200 -KAVTQRFREDAR 211
A Q+ +D+R
Sbjct: 1025 PSAYDQQSSKDSR 1037
>gi|87196600 polyserase 3 [Homo sapiens]
Length = 553
Score = 30.4 bits (67), Expect = 1.2
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 79 LDPNG---EAEILVFGRPSYQEDTIKMIMNLADYHRQLQAKGSGKA-LAQDVATQKAETQ 134
L+P+G +A I+ F QED ++ N A + LQA+ G A LAQ T + +
Sbjct: 231 LEPDGHWVQAGIISFASSCAQEDAPVLLTNTAAHSSWLQARVQGAAFLAQSPETPEMSDE 290
Query: 135 RSSI---EVREAGTQ 146
S + +R AG Q
Sbjct: 291 DSCVACGSLRTAGPQ 305
>gi|8922071 zinc finger protein 821 [Homo sapiens]
Length = 370
Score = 30.0 bits (66), Expect = 1.6
Identities = 35/159 (22%), Positives = 67/159 (42%), Gaps = 13/159 (8%)
Query: 61 ERIPHVQGMSQILIHVNRLDPNGEAEILVFGRPSYQEDTIKMIMNLADYHRQLQAKGSGK 120
E++P V M + N + E + + F P Y + + N A Y + L+A+
Sbjct: 154 EKLPEVLNMESLPTVHNEGPSSAEGKDIAFSPPVYPAGILLVCNNCAAYRKLLEAQTPSV 213
Query: 121 ---ALAQ-----DVATQKAETQRSSIEVR---EAGTQRSV-EVREAGTQRSVEVQEVGTQ 168
AL + +V Q+ E +R++ + R E +R V +R+ +R +QE Q
Sbjct: 214 RKWALRRQNEPLEVRLQRLERERTAKKSRRDNETPEEREVRRMRDREAKRLQRMQETDEQ 273
Query: 169 GSPVEVQEAGTQQSLQAANKSGTQRSPEAASKAVTQRFR 207
+ +Q L+ AN++ +R + +R +
Sbjct: 274 RAR-RLQRDREAMRLKRANETPEKRQARLIREREAKRLK 311
>gi|153791497 ciliary rootlet coiled-coil [Homo sapiens]
Length = 2017
Score = 29.6 bits (65), Expect = 2.1
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 5/100 (5%)
Query: 97 EDTIKMIMNLADYHRQL-QAKGSGKALAQDVATQKAETQRSSIEVREAGTQRSVEVREAG 155
+D ++ L HRQL Q +G LA+++ + R++++ R+ EV EA
Sbjct: 652 QDGARVRRELERSHRQLEQLEGKRSVLAKELVEVREALSRATLQ-RDMLQAEKAEVAEAL 710
Query: 156 TQRSVEVQEVGTQGSPVEVQEAGTQQS---LQAANKSGTQ 192
T+ E+ + + +EA Q S L A N+S Q
Sbjct: 711 TKAEAGRVELELSMTKLRAEEASLQDSLSKLSALNESLAQ 750
Score = 28.5 bits (62), Expect = 4.6
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 9/83 (10%)
Query: 124 QDVATQKA-ETQRSSIEVREAGTQRSVEVREAGTQRSVEVQEVGTQGSPVE-----VQEA 177
+D AT +A + Q++ E EA +RSV+ R +G Q + +QE + S E Q A
Sbjct: 1546 RDSATSRARQLQKAVAESEEA--RRSVDGRLSGVQAELALQEESVRRSERERRATLDQVA 1603
Query: 178 GTQQSLQAANKSGTQRSPEAASK 200
++SLQ A +S + S E SK
Sbjct: 1604 TLERSLQ-ATESELRASQEKISK 1625
>gi|33620745 pre-mRNA cleavage complex II protein Pcf11 [Homo
sapiens]
Length = 1555
Score = 29.6 bits (65), Expect = 2.1
Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 7/107 (6%)
Query: 111 RQLQAKGSGKALAQDVATQKAETQRSSIEVREAGTQRSVEVREAGTQRSVEVQEVGTQGS 170
+ LQ K GK DV ++ ++ + +S E R AG++ + V Q +
Sbjct: 406 KHLQDKTDGKD--DDVKEKRKTAEKKDKDEH----MKSSEHRLAGSRNKIINGIVQKQDT 459
Query: 171 PVEVQEA-GTQQSLQAANKSGTQRSPEAASKAVTQRFREDARDPVTR 216
E E GT+ + K RSP++ S + R D R P R
Sbjct: 460 ITEESEKQGTKPGRSSTRKRSRSRSPKSRSPIIHSPKRRDRRSPKRR 506
>gi|21328446 hormone-sensitive lipase [Homo sapiens]
Length = 1076
Score = 29.3 bits (64), Expect = 2.7
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Query: 126 VATQKAET-QRSSIEVREAGTQRSVEVREAGTQRSVEVQEVGTQGSPVEVQEAGTQQSLQ 184
+A +++T Q S+ + + A QR + +E Q E Q+ P Q++ +Q+
Sbjct: 34 IAQPESKTLQGSNTQQKPASNQRPLTQQETPAQHDAESQK-----EPRAQQKSASQEEFL 88
Query: 185 AANKSGTQRSPEAASKAVTQRFREDARDP 213
A K Q+SP +TQ+ + P
Sbjct: 89 APQKPAPQQSPYIQRVLLTQQEAASQQGP 117
Score = 28.5 bits (62), Expect = 4.6
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Query: 146 QRSVEVREAGTQR-------SVEVQEVGTQGSPVEVQEAGTQQSLQAANKSGTQRSPEAA 198
QR + E G ++ S +Q TQ P Q TQQ A + + +Q+ P A
Sbjct: 19 QRPITPLEPGPEKTPIAQPESKTLQGSNTQQKPASNQRPLTQQETPAQHDAESQKEPRAQ 78
Query: 199 SKAVTQ 204
K+ +Q
Sbjct: 79 QKSASQ 84
>gi|154355000 KH-type splicing regulatory protein [Homo sapiens]
Length = 711
Score = 29.3 bits (64), Expect = 2.7
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 55 IFGRGGERIPHVQ---GMSQILIHVNRLDPNGEAEILVFGRPSYQEDTIKMIMNL 106
+ G+GGE I +Q G+ ILI + N + + + G P + +M+M++
Sbjct: 248 VIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDI 302
>gi|5729953 nuclear distribution gene C homolog [Homo sapiens]
Length = 331
Score = 29.3 bits (64), Expect = 2.7
Identities = 24/102 (23%), Positives = 46/102 (45%), Gaps = 2/102 (1%)
Query: 101 KMIMNLADYHRQLQAKGSGKALAQDVATQKAETQRSSIEVREAGTQRS-VEVREAGTQRS 159
K+I +H QL K + A+ A ++ + +R++ +EA ++ S +++E + +
Sbjct: 53 KLITQTFSHHNQLAQKTRREKRARQEAERREKAERAARLAKEAKSETSGPQIKELTDEEA 112
Query: 160 VEVQEVGTQGSPVEVQEAGTQQ-SLQAANKSGTQRSPEAASK 200
+Q Q E EA + SL + K T+ E K
Sbjct: 113 ERLQLEIDQKKDAENHEAQLKNGSLDSPGKQDTEEDEEEDEK 154
>gi|153251878 AP20 region protein isoform B [Homo sapiens]
Length = 170
Score = 29.3 bits (64), Expect = 2.7
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 164 EVGTQGSPVEVQEAGTQQSLQAANKSGTQRSPEAA 198
++ TQG EVQ+ S+ AA +SGT P A
Sbjct: 71 DLWTQGKKTEVQKREGTDSIPAAGRSGTANQPSIA 105
>gi|56606114 trichohyalin-like 1 [Homo sapiens]
Length = 904
Score = 29.3 bits (64), Expect = 2.7
Identities = 27/133 (20%), Positives = 58/133 (43%), Gaps = 12/133 (9%)
Query: 77 NRLDPNGEAEILVFGRPSYQEDTIKMIMNLADYHRQLQAKGSGKALAQDVATQKAETQRS 136
NR+DP EA+ F + + + K ++ L+ + +AQD+ T + +
Sbjct: 155 NRVDPWREAKTHNFPGEASEHNDPK--------NKHLEGDEQSQEVAQDIQTTEDNEGQL 206
Query: 137 SIEVREAGTQRSVEVREAGTQRSVEVQEVGTQGSPVEVQEAGTQQSLQAANKSGTQRSPE 196
AG++++ + T+R + +E+ +G +++ ++ Q + G +
Sbjct: 207 KTNKPMAGSKKT----SSPTERKGQDKEISQEGDEPAREQSVSKIRDQFGEQEGNLATQS 262
Query: 197 AASKAVTQRFRED 209
+ K TQR ED
Sbjct: 263 SPPKEATQRPCED 275
>gi|222352149 DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 [Homo
sapiens]
Length = 648
Score = 28.5 bits (62), Expect = 4.6
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 42 PKVVRLEVWLVEKIFGRGGERIPHVQGMSQILIHVNRLDPNGEAEILVFGRPSYQEDTIK 101
P L+ V + GRGG +I ++Q + I + + P E+ + +FG + Q
Sbjct: 69 PLCFALKSHFVGAVIGRGGSKIKNIQSTTNTTIQIIQEQP--ESLVKIFGSKAMQTKAKA 126
Query: 102 MIMN 105
+I N
Sbjct: 127 VIDN 130
>gi|116235448 hypothetical protein LOC81610 [Homo sapiens]
Length = 615
Score = 28.5 bits (62), Expect = 4.6
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Query: 79 LDPNGEAEILVFGRPSYQEDTIKMIMNLADYHR-QLQAKGSGKALAQDVATQKAETQRSS 137
LDP AE +P E + + HR +LQ++ KA+ T+ E +
Sbjct: 376 LDPEMPAEGKAERKPHDCESSTVSEEDYFSSHRDELQSR---KAIDAATQTEPGE-EMPG 431
Query: 138 IEVREAGTQRSVEVREAGTQRSVEVQEVGTQ 168
+ V E GTQ S+ AGTQ +V + +Q
Sbjct: 432 LSVSEVGTQTSITTACAGTQTAVITRIASSQ 462
>gi|5454158 valyl-tRNA synthetase [Homo sapiens]
Length = 1264
Score = 28.1 bits (61), Expect = 6.0
Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 17/103 (16%)
Query: 75 HVNRLDPNGEAEILVFGRPSYQEDTIKMIMNLADYHRQLQAKGSGKALAQDVATQKAETQ 134
+V L G +L G P+ Q + + + H QLQ + ++ E Q
Sbjct: 1153 YVQALASAGVVAVLALGAPAPQGCAVALASDRCSIHLQLQGLVDPARELGKLQAKRVEAQ 1212
Query: 135 RSSIEVREAGTQRSVEVREAGTQRSVEVQEVGTQGSPVEVQEA 177
R + +RE R A + V+V P+EVQEA
Sbjct: 1213 RQAQRLRE---------RRAASGYPVKV--------PLEVQEA 1238
>gi|30026034 solute carrier family 35, member B2 [Homo sapiens]
Length = 432
Score = 28.1 bits (61), Expect = 6.0
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 7 FPTLVQLMQPKAMPVEVLGHLPKRFSWFHSEFL 39
FPT V K +PV ++G L R S+ H E+L
Sbjct: 209 FPTQVLAKASKVIPVMLMGKLVSRRSYEHWEYL 241
>gi|239757936 PREDICTED: similar to melanoma antigen family A, 5
[Homo sapiens]
Length = 127
Score = 27.7 bits (60), Expect = 7.8
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 161 EVQEVGTQGSPVEVQEAGTQQSLQAANKSGTQRSPEAASKAVT 203
E QE + SP+ V GT + L AA G+ +SP+ S + T
Sbjct: 35 EEQEAASFSSPLTV---GTLEGLPAAGSPGSPQSPQGTSTSPT 74
>gi|239752446 PREDICTED: similar to melanoma antigen family A, 5
[Homo sapiens]
Length = 127
Score = 27.7 bits (60), Expect = 7.8
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 161 EVQEVGTQGSPVEVQEAGTQQSLQAANKSGTQRSPEAASKAVT 203
E QE + SP+ V GT + L AA G+ +SP+ S + T
Sbjct: 35 EEQEAASFSSPLTV---GTLEGLPAAGSPGSPQSPQGTSTSPT 74
>gi|38569480 megakaryoblastic leukemia 2 protein [Homo sapiens]
Length = 1049
Score = 27.7 bits (60), Expect = 7.8
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 121 ALAQDVATQKAETQRSSIEVREAGTQRSVEVREAGTQRSVEVQEVGTQGSPVEVQEAGTQ 180
A +D Q+ E Q ++ + Q+ VEV + +EV++ G Q P+E Q +
Sbjct: 567 AAEKDRKLQEKEKQIEELKRKLEQEQKLVEV----LKMQLEVEKRGQQQRPLEAQPSAPG 622
Query: 181 QSLQAANKSGT 191
S+++ K G+
Sbjct: 623 HSVKSDQKHGS 633
>gi|217035154 RCSD domain containing 1 [Homo sapiens]
Length = 416
Score = 27.7 bits (60), Expect = 7.8
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 134 QRSSIEVREAGTQRSVEVREAGTQRSVEVQEV-----GTQGSPVEVQEAGTQ--QSLQAA 186
+RS + E G R+VE + + + EV GSP+ + A + ++L A
Sbjct: 175 RRSQSDCGELGDFRAVESSQQNGAKEEDGDEVLPSKSKAPGSPLSSEGAAGEGVRTLGPA 234
Query: 187 NKSGTQRSPEAASKAVTQRFREDARD 212
K +RSP K R E+A++
Sbjct: 235 EKPPLRRSPSRTEKQEEDRATEEAKN 260
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.130 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,417,782
Number of Sequences: 37866
Number of extensions: 299375
Number of successful extensions: 1173
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1137
Number of HSP's gapped (non-prelim): 49
length of query: 217
length of database: 18,247,518
effective HSP length: 98
effective length of query: 119
effective length of database: 14,536,650
effective search space: 1729861350
effective search space used: 1729861350
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.