Guide to the Human Genome
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Name: LOC392556 Sequence: fasta or formatted (127aa) NCBI GI: 239752446
Description:

PREDICTED: similar to melanoma antigen family A, 5

Not currently referenced in the text

Other entries for this name:
alt mRNA {127aa} PREDICTED: similar to melanoma antigen family A, 5
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7         11           2
 C cysteine            0.8          1           1
 D aspartate           3.9          5           1
 E glutamate          12.6         16           2
 F phenylalanine       2.4          3           1
 G glycine             8.7         11           1
 H histidine           1.6          2           1
 I isoleucine          0.8          1           1
 K lysine              2.4          3           1
 L leucine            11.0         14           2
 M methionine          0.8          1           1
 N asparagine          2.4          3           1
 P proline             9.4         12           1
 Q glutamine           7.1          9           1
 R arginine            0.8          1           1
 S serine             12.6         16           3
 T threonine           7.9         10           2
 V valine              3.9          5           1
 W tryptophan          0.8          1           1
 Y tyrosine            1.6          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to melanoma antigen family A, 5 ... 
LOC392556             1.000   PREDICTED: similar to melanoma antigen family A, 5 ...
MAGEA4                0.541   melanoma antigen family A, 4 
MAGEA4                0.541   melanoma antigen family A, 4 
MAGEA4                0.541   melanoma antigen family A, 4 
MAGEA4                0.541   melanoma antigen family A, 4 
MAGEA12               0.528   melanoma antigen family A, 12 
MAGEA5                0.519   melanoma antigen family A, 5 
MAGEA8                0.502   melanoma antigen family A, 8 
MAGEA3                0.498   melanoma antigen family A, 3 
MAGEA6                0.494   melanoma antigen family A, 6 
MAGEA6                0.494   melanoma antigen family A, 6 
MAGEA11               0.476   melanoma antigen family A, 11 isoform b 
MAGEA11               0.476   melanoma antigen family A, 11 isoform a 
MAGEA2                0.472   melanoma antigen family A, 2 
MAGEA2                0.472   melanoma antigen family A, 2 
MAGEA2                0.472   melanoma antigen family A, 2 
MAGEA2B               0.472   melanoma antigen family A, 2B 
MAGEA9B               0.437   melanoma antigen family A, 9 -like 
MAGEA9                0.437   melanoma antigen family A, 9 
MAGEA1                0.377   melanoma antigen family A, 1 
MAGEA10               0.234   melanoma antigen family A, 10 
MAGEA10               0.234   melanoma antigen family A, 10 
MAGEB16               0.182   melanoma antigen family B, 16 
MAGEB2                0.121   melanoma antigen family B, 2 
MAGEC3                0.117   melanoma antigen family C, 3 isoform 1 
MAGEB17               0.117   PREDICTED: melanoma antigen family B, 17 
MAGEB17               0.117   PREDICTED: melanoma antigen family B, 17 
MAGEB17               0.117   PREDICTED: melanoma antigen family B, 17 
MAGEC3                0.113   melanoma antigen family C, 3 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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