Guide to the Human Genome
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Name: FAM83D Sequence: fasta or formatted (615aa) NCBI GI: 116235448
Description:

hypothetical protein LOC81610

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5         52           7
 C cysteine            1.6         10           1
 D aspartate           4.7         29           1
 E glutamate           6.8         42           2
 F phenylalanine       4.1         25           1
 G glycine             6.5         40           2
 H histidine           2.6         16           1
 I isoleucine          4.1         25           2
 K lysine              3.6         22           1
 L leucine            10.4         64           2
 M methionine          2.1         13           1
 N asparagine          2.6         16           1
 P proline             5.5         34           2
 Q glutamine           4.1         25           2
 R arginine            7.3         45           2
 S serine             11.1         68           4
 T threonine           6.7         41           3
 V valine              4.9         30           2
 W tryptophan          0.5          3           1
 Y tyrosine            2.4         15           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC81610 
FAM83E                0.148   hypothetical protein LOC54854 
FAM83G                0.135   hypothetical protein LOC644815 
FAM83F                0.131   hypothetical protein LOC113828 
FAM83B                0.128   hypothetical protein LOC222584 
FAM83C                0.127   hypothetical protein LOC128876 
FAM83H                0.124   FAM83H 
FAM83A                0.112   hypothetical protein LOC84985 isoform b 
FAM83A                0.112   hypothetical protein LOC84985 isoform a 
LOC729792             0.018   PREDICTED: hypothetical protein 
LOC729792             0.018   PREDICTED: hypothetical protein 
LOC729792             0.018   PREDICTED: hypothetical protein 
LOC100294501          0.018   PREDICTED: hypothetical protein 
LOC100294238          0.018   PREDICTED: hypothetical protein 
LOC100294204          0.018   PREDICTED: hypothetical protein 
LOC100294136          0.018   PREDICTED: hypothetical protein 
LOC100294091          0.018   PREDICTED: hypothetical protein 
LOC730401             0.018   PREDICTED: hypothetical protein 
MUC17                 0.017   mucin 17 
MUC12                 0.016   PREDICTED: mucin 12 
LOC100294249          0.016   PREDICTED: hypothetical protein XP_002344067 
TNRC18                0.015   trinucleotide repeat containing 18 
MUC12                 0.014   PREDICTED: mucin 12, cell surface associated 
LOC100131251          0.013   PREDICTED: hypothetical protein 
LOC100131251          0.013   PREDICTED: hypothetical protein 
LOC729815             0.012   PREDICTED: hypothetical protein 
MUC12                 0.011   PREDICTED: mucin 12 
MUC12                 0.011   PREDICTED: mucin 12 
CHD9                  0.010   chromodomain helicase DNA binding protein 9 
LOC729815             0.009   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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