Guide to the Human Genome
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Name: DPPA5 Sequence: fasta or formatted (116aa) NCBI GI: 70608179
Description:

developmental pluripotency associated 5

Referenced in:

Stem Cells and Early Development

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9          8           1
 C cysteine            0.0          0           0
 D aspartate           3.4          4           1
 E glutamate           8.6         10           1
 F phenylalanine       1.7          2           1
 G glycine             5.2          6           1
 H histidine           1.7          2           1
 I isoleucine          3.4          4           1
 K lysine              7.8          9           1
 L leucine            12.9         15           2
 M methionine          6.0          7           1
 N asparagine          0.9          1           1
 P proline             6.9          8           2
 Q glutamine           5.2          6           1
 R arginine            6.9          8           2
 S serine              5.2          6           2
 T threonine           3.4          4           1
 V valine              6.9          8           3
 W tryptophan          3.4          4           1
 Y tyrosine            3.4          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   developmental pluripotency associated 5 
OOEP                  0.188   oocyte expressed protein homolog 
C6orf221              0.164   hypothetical protein LOC154288 
LOC100129128          0.047   hypothetical protein LOC100129128 
KHDC1                 0.023   KH homology domain containing 1 
PLEKHA6               0.023   phosphoinositol 3-phosphate-binding protein-3 
DSEL                  0.009   dermatan sulfate epimerase-like 
PLEKHG3               0.009   pleckstrin homology domain containing, family G, mem...
SPTBN1                0.009   spectrin, beta, non-erythrocytic 1 isoform 2 
SPTBN1                0.009   spectrin, beta, non-erythrocytic 1 isoform 1 
USP34                 0.009   ubiquitin specific protease 34 
STK33                 0.009   serine/threonine kinase 33 
LOC100292136          0.005   PREDICTED: hypothetical protein 
LOC100287246          0.005   PREDICTED: hypothetical protein 
LOC100287246          0.005   PREDICTED: hypothetical protein XP_002342513 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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