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Search of human proteins with 62422571
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|62422571 collapsin response mediator protein 1 isoform 1
[Homo sapiens]
(686 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|62422571 collapsin response mediator protein 1 isoform 1 [Hom... 1386 0.0
gi|4503051 collapsin response mediator protein 1 isoform 2 [Homo... 1129 0.0
gi|4503377 dihydropyrimidinase-like 2 [Homo sapiens] 897 0.0
gi|4503379 dihydropyrimidinase-like 3 [Homo sapiens] 859 0.0
gi|190194363 dihydropyrimidinase-like 4 [Homo sapiens] 813 0.0
gi|4503375 dihydropyrimidinase [Homo sapiens] 625 e-179
gi|19923821 dihydropyrimidinase-like 5 [Homo sapiens] 588 e-168
gi|18105007 carbamoylphosphate synthetase 2/aspartate transcarba... 42 0.001
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 35 0.30
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 35 0.30
gi|239749538 PREDICTED: hypothetical protein XP_002347080 [Homo ... 34 0.39
gi|239743688 PREDICTED: hypothetical protein XP_002342946 [Homo ... 34 0.39
gi|47778921 alpha 1 type XIX collagen precursor [Homo sapiens] 34 0.39
gi|4507693 tuberous sclerosis 1 protein isoform 1 [Homo sapiens] 34 0.51
gi|241666464 tuberous sclerosis 1 protein isoform 4 [Homo sapiens] 34 0.51
gi|241666462 tuberous sclerosis 1 protein isoform 3 [Homo sapiens] 34 0.51
gi|116268127 kinase non-catalytic C-lobe domain (KIND) containin... 34 0.51
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 33 0.67
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ... 33 0.67
gi|26051235 nucleoporin 133kDa [Homo sapiens] 33 0.67
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 33 0.88
gi|48762934 alpha 2 type I collagen [Homo sapiens] 33 1.1
gi|223972612 Crm, cramped-like [Homo sapiens] 32 2.0
gi|169167808 PREDICTED: hypothetical protein [Homo sapiens] 32 2.0
gi|113417039 PREDICTED: hypothetical protein [Homo sapiens] 32 2.0
gi|113416520 PREDICTED: hypothetical protein [Homo sapiens] 32 2.0
gi|207028781 zinc finger and SCAN domain containing 5B [Homo sap... 32 2.0
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 32 2.6
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 32 2.6
gi|239742880 PREDICTED: hypothetical protein XP_002342669 [Homo ... 32 2.6
>gi|62422571 collapsin response mediator protein 1 isoform 1 [Homo
sapiens]
Length = 686
Score = 1386 bits (3587), Expect = 0.0
Identities = 686/686 (100%), Positives = 686/686 (100%)
Query: 1 MADRRRAWNTEDDLPVYLARPGSAAQTPRQKYGGMFAAVEGAYENKTIDFDAYSVGRRGS 60
MADRRRAWNTEDDLPVYLARPGSAAQTPRQKYGGMFAAVEGAYENKTIDFDAYSVGRRGS
Sbjct: 1 MADRRRAWNTEDDLPVYLARPGSAAQTPRQKYGGMFAAVEGAYENKTIDFDAYSVGRRGS 60
Query: 61 ARTPRSAGRPDAVGLPGPGGSEDTASDVSEPSGSAVSSPGERDERPPTLRIRRPAPRDLP 120
ARTPRSAGRPDAVGLPGPGGSEDTASDVSEPSGSAVSSPGERDERPPTLRIRRPAPRDLP
Sbjct: 61 ARTPRSAGRPDAVGLPGPGGSEDTASDVSEPSGSAVSSPGERDERPPTLRIRRPAPRDLP 120
Query: 121 LGRDNGQSDRLLIKGGRIINDDQSLYADVYLEDGLIKQIGENLIVPGGVKTIEANGRMVI 180
LGRDNGQSDRLLIKGGRIINDDQSLYADVYLEDGLIKQIGENLIVPGGVKTIEANGRMVI
Sbjct: 121 LGRDNGQSDRLLIKGGRIINDDQSLYADVYLEDGLIKQIGENLIVPGGVKTIEANGRMVI 180
Query: 181 PGGIDVNTYLQKPSQGMTAADDFFQGTRAALVGGTTMIIDHVVPEPGSSLLTSFEKWHEA 240
PGGIDVNTYLQKPSQGMTAADDFFQGTRAALVGGTTMIIDHVVPEPGSSLLTSFEKWHEA
Sbjct: 181 PGGIDVNTYLQKPSQGMTAADDFFQGTRAALVGGTTMIIDHVVPEPGSSLLTSFEKWHEA 240
Query: 241 ADTKSCCDYSLHVDITSWYDGVREELEVLVQDKGVNSFQVYMAYKDVYQMSDSQLYEAFT 300
ADTKSCCDYSLHVDITSWYDGVREELEVLVQDKGVNSFQVYMAYKDVYQMSDSQLYEAFT
Sbjct: 241 ADTKSCCDYSLHVDITSWYDGVREELEVLVQDKGVNSFQVYMAYKDVYQMSDSQLYEAFT 300
Query: 301 FLKGLGAVILVHAENGDLIAQEQKRILEMGITGPEGHALSRPEELEAEAVFRAITIAGRI 360
FLKGLGAVILVHAENGDLIAQEQKRILEMGITGPEGHALSRPEELEAEAVFRAITIAGRI
Sbjct: 301 FLKGLGAVILVHAENGDLIAQEQKRILEMGITGPEGHALSRPEELEAEAVFRAITIAGRI 360
Query: 361 NCPVYITKVMSKSAADIIALARKKGPLVFGEPIAASLGTDGTHYWSKNWAKAAAFVTSPP 420
NCPVYITKVMSKSAADIIALARKKGPLVFGEPIAASLGTDGTHYWSKNWAKAAAFVTSPP
Sbjct: 361 NCPVYITKVMSKSAADIIALARKKGPLVFGEPIAASLGTDGTHYWSKNWAKAAAFVTSPP 420
Query: 421 LSPDPTTPDYLTSLLACGDLQVTGSGHCPYSTAQKAVGKDNFTLIPEGVNGIEERMTVVW 480
LSPDPTTPDYLTSLLACGDLQVTGSGHCPYSTAQKAVGKDNFTLIPEGVNGIEERMTVVW
Sbjct: 421 LSPDPTTPDYLTSLLACGDLQVTGSGHCPYSTAQKAVGKDNFTLIPEGVNGIEERMTVVW 480
Query: 481 DKAVATGKMDENQFVAVTSTNAAKIFNLYPRKGRIAVGSDADVVIWDPDKLKTITAKSHK 540
DKAVATGKMDENQFVAVTSTNAAKIFNLYPRKGRIAVGSDADVVIWDPDKLKTITAKSHK
Sbjct: 481 DKAVATGKMDENQFVAVTSTNAAKIFNLYPRKGRIAVGSDADVVIWDPDKLKTITAKSHK 540
Query: 541 SAVEYNIFEGMECHGSPLVVISQGKIVFEDGNINVNKGMGRFIPRKAFPEHLYQRVKIRN 600
SAVEYNIFEGMECHGSPLVVISQGKIVFEDGNINVNKGMGRFIPRKAFPEHLYQRVKIRN
Sbjct: 541 SAVEYNIFEGMECHGSPLVVISQGKIVFEDGNINVNKGMGRFIPRKAFPEHLYQRVKIRN 600
Query: 601 KVFGLQGVSRGMYDGPVYEVPATPKYATPAPSAKSSPSKHQPPPIRNLHQSNFSLSGAQI 660
KVFGLQGVSRGMYDGPVYEVPATPKYATPAPSAKSSPSKHQPPPIRNLHQSNFSLSGAQI
Sbjct: 601 KVFGLQGVSRGMYDGPVYEVPATPKYATPAPSAKSSPSKHQPPPIRNLHQSNFSLSGAQI 660
Query: 661 DDNNPRRTGHRIVAPPGGRSNITSLG 686
DDNNPRRTGHRIVAPPGGRSNITSLG
Sbjct: 661 DDNNPRRTGHRIVAPPGGRSNITSLG 686
>gi|4503051 collapsin response mediator protein 1 isoform 2 [Homo
sapiens]
Length = 572
Score = 1129 bits (2919), Expect = 0.0
Identities = 559/559 (100%), Positives = 559/559 (100%)
Query: 128 SDRLLIKGGRIINDDQSLYADVYLEDGLIKQIGENLIVPGGVKTIEANGRMVIPGGIDVN 187
SDRLLIKGGRIINDDQSLYADVYLEDGLIKQIGENLIVPGGVKTIEANGRMVIPGGIDVN
Sbjct: 14 SDRLLIKGGRIINDDQSLYADVYLEDGLIKQIGENLIVPGGVKTIEANGRMVIPGGIDVN 73
Query: 188 TYLQKPSQGMTAADDFFQGTRAALVGGTTMIIDHVVPEPGSSLLTSFEKWHEAADTKSCC 247
TYLQKPSQGMTAADDFFQGTRAALVGGTTMIIDHVVPEPGSSLLTSFEKWHEAADTKSCC
Sbjct: 74 TYLQKPSQGMTAADDFFQGTRAALVGGTTMIIDHVVPEPGSSLLTSFEKWHEAADTKSCC 133
Query: 248 DYSLHVDITSWYDGVREELEVLVQDKGVNSFQVYMAYKDVYQMSDSQLYEAFTFLKGLGA 307
DYSLHVDITSWYDGVREELEVLVQDKGVNSFQVYMAYKDVYQMSDSQLYEAFTFLKGLGA
Sbjct: 134 DYSLHVDITSWYDGVREELEVLVQDKGVNSFQVYMAYKDVYQMSDSQLYEAFTFLKGLGA 193
Query: 308 VILVHAENGDLIAQEQKRILEMGITGPEGHALSRPEELEAEAVFRAITIAGRINCPVYIT 367
VILVHAENGDLIAQEQKRILEMGITGPEGHALSRPEELEAEAVFRAITIAGRINCPVYIT
Sbjct: 194 VILVHAENGDLIAQEQKRILEMGITGPEGHALSRPEELEAEAVFRAITIAGRINCPVYIT 253
Query: 368 KVMSKSAADIIALARKKGPLVFGEPIAASLGTDGTHYWSKNWAKAAAFVTSPPLSPDPTT 427
KVMSKSAADIIALARKKGPLVFGEPIAASLGTDGTHYWSKNWAKAAAFVTSPPLSPDPTT
Sbjct: 254 KVMSKSAADIIALARKKGPLVFGEPIAASLGTDGTHYWSKNWAKAAAFVTSPPLSPDPTT 313
Query: 428 PDYLTSLLACGDLQVTGSGHCPYSTAQKAVGKDNFTLIPEGVNGIEERMTVVWDKAVATG 487
PDYLTSLLACGDLQVTGSGHCPYSTAQKAVGKDNFTLIPEGVNGIEERMTVVWDKAVATG
Sbjct: 314 PDYLTSLLACGDLQVTGSGHCPYSTAQKAVGKDNFTLIPEGVNGIEERMTVVWDKAVATG 373
Query: 488 KMDENQFVAVTSTNAAKIFNLYPRKGRIAVGSDADVVIWDPDKLKTITAKSHKSAVEYNI 547
KMDENQFVAVTSTNAAKIFNLYPRKGRIAVGSDADVVIWDPDKLKTITAKSHKSAVEYNI
Sbjct: 374 KMDENQFVAVTSTNAAKIFNLYPRKGRIAVGSDADVVIWDPDKLKTITAKSHKSAVEYNI 433
Query: 548 FEGMECHGSPLVVISQGKIVFEDGNINVNKGMGRFIPRKAFPEHLYQRVKIRNKVFGLQG 607
FEGMECHGSPLVVISQGKIVFEDGNINVNKGMGRFIPRKAFPEHLYQRVKIRNKVFGLQG
Sbjct: 434 FEGMECHGSPLVVISQGKIVFEDGNINVNKGMGRFIPRKAFPEHLYQRVKIRNKVFGLQG 493
Query: 608 VSRGMYDGPVYEVPATPKYATPAPSAKSSPSKHQPPPIRNLHQSNFSLSGAQIDDNNPRR 667
VSRGMYDGPVYEVPATPKYATPAPSAKSSPSKHQPPPIRNLHQSNFSLSGAQIDDNNPRR
Sbjct: 494 VSRGMYDGPVYEVPATPKYATPAPSAKSSPSKHQPPPIRNLHQSNFSLSGAQIDDNNPRR 553
Query: 668 TGHRIVAPPGGRSNITSLG 686
TGHRIVAPPGGRSNITSLG
Sbjct: 554 TGHRIVAPPGGRSNITSLG 572
>gi|4503377 dihydropyrimidinase-like 2 [Homo sapiens]
Length = 572
Score = 897 bits (2319), Expect = 0.0
Identities = 425/559 (76%), Positives = 498/559 (89%)
Query: 128 SDRLLIKGGRIINDDQSLYADVYLEDGLIKQIGENLIVPGGVKTIEANGRMVIPGGIDVN 187
SDRLLIKGG+I+NDDQS YAD+Y+EDGLIKQIGENLIVPGGVKTIEA+ RMVIPGGIDV+
Sbjct: 14 SDRLLIKGGKIVNDDQSFYADIYMEDGLIKQIGENLIVPGGVKTIEAHSRMVIPGGIDVH 73
Query: 188 TYLQKPSQGMTAADDFFQGTRAALVGGTTMIIDHVVPEPGSSLLTSFEKWHEAADTKSCC 247
T Q P QGMT+ADDFFQGT+AAL GGTTMIIDHVVPEPG+SLL +F++W E AD+KSCC
Sbjct: 74 TRFQMPDQGMTSADDFFQGTKAALAGGTTMIIDHVVPEPGTSLLAAFDQWREWADSKSCC 133
Query: 248 DYSLHVDITSWYDGVREELEVLVQDKGVNSFQVYMAYKDVYQMSDSQLYEAFTFLKGLGA 307
DYSLHVDI+ W+ G++EE+E LV+D GVNSF VYMA+KD +Q++D Q+YE + ++ +GA
Sbjct: 134 DYSLHVDISEWHKGIQEEMEALVKDHGVNSFLVYMAFKDRFQLTDCQIYEVLSVIRDIGA 193
Query: 308 VILVHAENGDLIAQEQKRILEMGITGPEGHALSRPEELEAEAVFRAITIAGRINCPVYIT 367
+ VHAENGD+IA+EQ+RIL++GITGPEGH LSRPEE+EAEAV RAITIA + NCP+YIT
Sbjct: 194 IAQVHAENGDIIAEEQQRILDLGITGPEGHVLSRPEEVEAEAVNRAITIANQTNCPLYIT 253
Query: 368 KVMSKSAADIIALARKKGPLVFGEPIAASLGTDGTHYWSKNWAKAAAFVTSPPLSPDPTT 427
KVMSKS+A++IA ARKKG +V+GEPI ASLGTDG+HYWSKNWAKAAAFVTSPPLSPDPTT
Sbjct: 254 KVMSKSSAEVIAQARKKGTVVYGEPITASLGTDGSHYWSKNWAKAAAFVTSPPLSPDPTT 313
Query: 428 PDYLTSLLACGDLQVTGSGHCPYSTAQKAVGKDNFTLIPEGVNGIEERMTVVWDKAVATG 487
PD+L SLL+CGDLQVTGS HC ++TAQKAVGKDNFTLIPEG NG EERM+V+WDKAV TG
Sbjct: 314 PDFLNSLLSCGDLQVTGSAHCTFNTAQKAVGKDNFTLIPEGTNGTEERMSVIWDKAVVTG 373
Query: 488 KMDENQFVAVTSTNAAKIFNLYPRKGRIAVGSDADVVIWDPDKLKTITAKSHKSAVEYNI 547
KMDENQFVAVTSTNAAK+FNLYPRKGRIAVGSDAD+VIWDPD +KTI+AK+H S++EYNI
Sbjct: 374 KMDENQFVAVTSTNAAKVFNLYPRKGRIAVGSDADLVIWDPDSVKTISAKTHNSSLEYNI 433
Query: 548 FEGMECHGSPLVVISQGKIVFEDGNINVNKGMGRFIPRKAFPEHLYQRVKIRNKVFGLQG 607
FEGMEC GSPLVVISQGKIV EDG ++V +G GR+IPRK FP+ +Y+R+K R+++ L+G
Sbjct: 434 FEGMECRGSPLVVISQGKIVLEDGTLHVTEGSGRYIPRKPFPDFVYKRIKARSRLAELRG 493
Query: 608 VSRGMYDGPVYEVPATPKYATPAPSAKSSPSKHQPPPIRNLHQSNFSLSGAQIDDNNPRR 667
V RG+YDGPV EV TPK TPA SAK+SP+K Q PP+RNLHQS FSLSGAQIDDN PRR
Sbjct: 494 VPRGLYDGPVCEVSVTPKTVTPASSAKTSPAKQQAPPVRNLHQSGFSLSGAQIDDNIPRR 553
Query: 668 TGHRIVAPPGGRSNITSLG 686
T RIVAPPGGR+NITSLG
Sbjct: 554 TTQRIVAPPGGRANITSLG 572
>gi|4503379 dihydropyrimidinase-like 3 [Homo sapiens]
Length = 570
Score = 859 bits (2219), Expect = 0.0
Identities = 414/558 (74%), Positives = 482/558 (86%), Gaps = 2/558 (0%)
Query: 128 SDRLLIKGGRIINDDQSLYADVYLEDGLIKQIGENLIVPGGVKTIEANGRMVIPGGIDVN 187
SDRLLIKGGRI+NDDQS YAD+Y+EDGLIKQIG+NLIVPGGVKTIEANG+MVIPGGIDV+
Sbjct: 14 SDRLLIKGGRIVNDDQSFYADIYMEDGLIKQIGDNLIVPGGVKTIEANGKMVIPGGIDVH 73
Query: 188 TYLQKPSQGMTAADDFFQGTRAALVGGTTMIIDHVVPEPGSSLLTSFEKWHEAADTKSCC 247
T+ Q P +GMT DDFFQGT+AAL GGTTMIIDHVVPEP SSL ++EKW E AD KSCC
Sbjct: 74 THFQMPYKGMTTVDDFFQGTKAALAGGTTMIIDHVVPEPESSLTEAYEKWREWADGKSCC 133
Query: 248 DYSLHVDITSWYDGVREELEVLVQDKGVNSFQVYMAYKDVYQMSDSQLYEAFTFLKGLGA 307
DY+LHVDIT W D V++E++ L++DKGVNSF VYMAYKD+YQ+S+++LYE FT L LGA
Sbjct: 134 DYALHVDITHWNDSVKQEVQNLIKDKGVNSFMVYMAYKDLYQVSNTELYEIFTCLGELGA 193
Query: 308 VILVHAENGDLIAQEQKRILEMGITGPEGHALSRPEELEAEAVFRAITIAGRINCPVYIT 367
+ VHAENGD+IAQEQ R+LEMGITGPEGH LSRPEELEAEAVFRAITIA + NCP+Y+T
Sbjct: 194 IAQVHAENGDIIAQEQTRMLEMGITGPEGHVLSRPEELEAEAVFRAITIASQTNCPLYVT 253
Query: 368 KVMSKSAADIIALARKKGPLVFGEPIAASLGTDGTHYWSKNWAKAAAFVTSPPLSPDPTT 427
KVMSKSAAD+I+ ARKKG +VFGEPI ASLG DGTHYWSKNWAKAAAFVTSPPLSPDPTT
Sbjct: 254 KVMSKSAADLISQARKKGNVVFGEPITASLGIDGTHYWSKNWAKAAAFVTSPPLSPDPTT 313
Query: 428 PDYLTSLLACGDLQVTGSGHCPYSTAQKAVGKDNFTLIPEGVNGIEERMTVVWDKAVATG 487
PDY+ SLLA GDLQ++GS HC +STAQKA+GKDNFT IPEG NG+EERM+V+WDKAVATG
Sbjct: 314 PDYINSLLASGDLQLSGSAHCTFSTAQKAIGKDNFTAIPEGTNGVEERMSVIWDKAVATG 373
Query: 488 KMDENQFVAVTSTNAAKIFNLYPRKGRIAVGSDADVVIWDPDKLKTITAKSHKSAVEYNI 547
KMDENQFVAVTSTNAAKIFNLYPRKGRI+VGSD+D+VIWDPD +K ++AK+H+SA EYNI
Sbjct: 374 KMDENQFVAVTSTNAAKIFNLYPRKGRISVGSDSDLVIWDPDAVKIVSAKNHQSAAEYNI 433
Query: 548 FEGMECHGSPLVVISQGKIVFEDGNINVNKGMGRFIPRKAFPEHLYQRVKIRNKVFGLQG 607
FEGME G+PLVVI QGKI+ EDGN++V +G GRFIP F +++Y+R+K R K+ L
Sbjct: 434 FEGMELRGAPLVVICQGKIMLEDGNLHVTQGAGRFIPCSPFSDYVYKRIKARRKMADLHA 493
Query: 608 VSRGMYDGPVYEVPATPKYATPAPSAKSSPSKHQPPPIRNLHQSNFSLSGAQIDDNNPRR 667
V RGMYDGPV+++ TPK TPA SA+ SP++ PP+RNLHQS FSLSG Q+D+ R
Sbjct: 494 VPRGMYDGPVFDLTTTPKGGTPAGSARGSPTRPN-PPVRNLHQSGFSLSGTQVDE-GVRS 551
Query: 668 TGHRIVAPPGGRSNITSL 685
RIVAPPGGRSNITSL
Sbjct: 552 ASKRIVAPPGGRSNITSL 569
>gi|190194363 dihydropyrimidinase-like 4 [Homo sapiens]
Length = 572
Score = 813 bits (2100), Expect = 0.0
Identities = 384/558 (68%), Positives = 468/558 (83%)
Query: 128 SDRLLIKGGRIINDDQSLYADVYLEDGLIKQIGENLIVPGGVKTIEANGRMVIPGGIDVN 187
SDRLLI+GGRI+NDDQS YADV++EDGLIKQIGENLIVPGG+KTI+A+G MV+PGG+DV+
Sbjct: 14 SDRLLIRGGRIVNDDQSFYADVHVEDGLIKQIGENLIVPGGIKTIDAHGLMVLPGGVDVH 73
Query: 188 TYLQKPSQGMTAADDFFQGTRAALVGGTTMIIDHVVPEPGSSLLTSFEKWHEAADTKSCC 247
T LQ P GMT ADDF QGT+AAL GGTTMI+DHV P+ G SLL ++E+W E AD+ +CC
Sbjct: 74 TRLQMPVLGMTPADDFCQGTKAALAGGTTMILDHVFPDTGVSLLAAYEQWRERADSAACC 133
Query: 248 DYSLHVDITSWYDGVREELEVLVQDKGVNSFQVYMAYKDVYQMSDSQLYEAFTFLKGLGA 307
DYSLHVDIT W++ ++EELE LV++KGVNSF V+MAYKD Q SDSQ+YE F+ ++ LGA
Sbjct: 134 DYSLHVDITRWHESIKEELEALVKEKGVNSFLVFMAYKDRCQCSDSQMYEIFSIIRDLGA 193
Query: 308 VILVHAENGDLIAQEQKRILEMGITGPEGHALSRPEELEAEAVFRAITIAGRINCPVYIT 367
+ VHAENGD++ +EQKR+LE+GITGPEGH LS PEE+EAEAV+RA+TIA + NCP+Y+T
Sbjct: 194 LAQVHAENGDIVEEEQKRLLELGITGPEGHVLSHPEEVEAEAVYRAVTIAKQANCPLYVT 253
Query: 368 KVMSKSAADIIALARKKGPLVFGEPIAASLGTDGTHYWSKNWAKAAAFVTSPPLSPDPTT 427
KVMSK AAD IA A+++G +VFGEPI ASLGTDG+HYWSKNWAKAAAFVTSPP++PDPTT
Sbjct: 254 KVMSKGAADAIAQAKRRGVVVFGEPITASLGTDGSHYWSKNWAKAAAFVTSPPVNPDPTT 313
Query: 428 PDYLTSLLACGDLQVTGSGHCPYSTAQKAVGKDNFTLIPEGVNGIEERMTVVWDKAVATG 487
D+LT LL+ GDLQVTGS HC ++TAQKAVGKDNF LIPEG NGIEERM++VW+K VA+G
Sbjct: 314 ADHLTCLLSSGDLQVTGSAHCTFTTAQKAVGKDNFALIPEGTNGIEERMSMVWEKCVASG 373
Query: 488 KMDENQFVAVTSTNAAKIFNLYPRKGRIAVGSDADVVIWDPDKLKTITAKSHKSAVEYNI 547
KMDEN+FVAVTSTNAAKIFN YPRKGR+AVGSDAD+VIW+P K I+AK+H VEYNI
Sbjct: 374 KMDENEFVAVTSTNAAKIFNFYPRKGRVAVGSDADLVIWNPKATKIISAKTHNLNVEYNI 433
Query: 548 FEGMECHGSPLVVISQGKIVFEDGNINVNKGMGRFIPRKAFPEHLYQRVKIRNKVFGLQG 607
FEG+EC G+P VVISQG++ EDG + V G GRF+PRK FP+ +Y+R+K RN++ + G
Sbjct: 434 FEGVECRGAPAVVISQGRVALEDGKMFVTPGAGRFVPRKTFPDFVYKRIKARNRLAEIHG 493
Query: 608 VSRGMYDGPVYEVPATPKYATPAPSAKSSPSKHQPPPIRNLHQSNFSLSGAQIDDNNPRR 667
V RG+YDGPV+EV K + AP+ S P K PP+RNLHQS FSLSG+Q DD+ RR
Sbjct: 494 VPRGLYDGPVHEVMVPAKPGSGAPARASCPGKISVPPVRNLHQSGFSLSGSQADDHIARR 553
Query: 668 TGHRIVAPPGGRSNITSL 685
T +I+APPGGRSNITSL
Sbjct: 554 TAQKIMAPPGGRSNITSL 571
>gi|4503375 dihydropyrimidinase [Homo sapiens]
Length = 519
Score = 625 bits (1611), Expect = e-179
Identities = 304/518 (58%), Positives = 390/518 (75%), Gaps = 8/518 (1%)
Query: 130 RLLIKGGRIINDDQSLYADVYLEDGLIKQIGENLIVPGG----VKTIEANGRMVIPGGID 185
RLLI+GGR++NDD S ADV +EDG+++ +G +L+ PGG ++ ++A G++V+PGGID
Sbjct: 6 RLLIRGGRVVNDDFSEVADVLVEDGVVRALGHDLLPPGGAPAGLRVLDAAGKLVLPGGID 65
Query: 186 VNTYLQKPSQGMTAADDFFQGTRAALVGGTTMIIDHVVPEPGSSLLTSFEKWHEAADTKS 245
+T++Q P G + DDF QGT+AAL GGTTMIID +P+ G SL+ +FE W AD K
Sbjct: 66 THTHMQFPFMGSRSIDDFHQGTKAALSGGTTMIIDFAIPQKGGSLIEAFETWRSWADPKV 125
Query: 246 CCDYSLHVDITSWYDGVREELEVLVQDKGVNSFQVYMAYKDVYQMSDSQLYEAFTFLKGL 305
CCDYSLHV +T W D V+EE+++LVQDKGVNSF+++MAYKD+Y ++D +LYEAF+ K +
Sbjct: 126 CCDYSLHVAVTWWSDQVKEEMKILVQDKGVNSFKMFMAYKDLYMVTDLELYEAFSRCKEI 185
Query: 306 GAVILVHAENGDLIAQEQKRILEMGITGPEGHALSRPEELEAEAVFRAITIAGRINCPVY 365
GA+ VHAENGDLIA+ K++L +GITGPEGH L RPE +EAEA RAITIA +NCP+Y
Sbjct: 186 GAIAQVHAENGDLIAEGAKKMLALGITGPEGHELCRPEAVEAEATLRAITIASAVNCPLY 245
Query: 366 ITKVMSKSAADIIALARKKGPLVFGEPIAASLGTDGTHYWSKNWAKAAAFVTSPPLSPDP 425
I VMSKSAA +IA AR+ G +V+GEPIAASLGTDGTHYW+K W AA V PPL PDP
Sbjct: 246 IVHVMSKSAAKVIADARRDGKVVYGEPIAASLGTDGTHYWNKEWHHAAHHVMGPPLRPDP 305
Query: 426 TTPDYLTSLLACGDLQVTGSGHCPYSTAQKAVGKDNFTLIPEGVNGIEERMTVVWDKAVA 485
+TPD+L +LLA DL TG+ +C ++T QKA+GKD+FT IP GVNG+E+RM+V+W+K V
Sbjct: 306 STPDFLMNLLANDDLTTTGTDNCTFNTCQKALGKDDFTKIPNGVNGVEDRMSVIWEKGVH 365
Query: 486 TGKMDENQFVAVTSTNAAKIFNLYPRKGRIAVGSDADVVIWDPDKLKTITAKSHKSAVEY 545
+GKMDEN+FVAVTSTNAAKIFNLYPRKGRIAVGSDAD+VIWDP +TI+AK+H AV +
Sbjct: 366 SGKMDENRFVAVTSTNAAKIFNLYPRKGRIAVGSDADIVIWDPKGTRTISAKTHHQAVNF 425
Query: 546 NIFEGMECHGSPLVVISQGKIVFEDGNINVNKGMGRFIPRKAFPEHLYQRVKIRNKVFGL 605
NIFEGM CHG PLV IS+GK+V+E G +V G G+FIPRK F E++Y+R+K R++
Sbjct: 426 NIFEGMVCHGVPLVTISRGKVVYEAGVFSVTAGDGKFIPRKPFAEYIYKRIKQRDRTCTP 485
Query: 606 QGVSRGMYDGPVYEVPATPKYATPAPSAKSSPSKHQPP 643
V R Y G V AT K A + K P
Sbjct: 486 TPVERAPYKGEV----ATLKSRVTKEDATAGTRKQAHP 519
>gi|19923821 dihydropyrimidinase-like 5 [Homo sapiens]
Length = 564
Score = 588 bits (1515), Expect = e-168
Identities = 285/560 (50%), Positives = 397/560 (70%), Gaps = 5/560 (0%)
Query: 125 NGQSDRLLIKGGRIINDDQSLYADVYLEDGLIKQIGENLIVPGGVKTIEANGRMVIPGGI 184
N S R+LIKGG+++NDD + ADVY+E+G+I+Q+G L++PGG K I+A G++VIPGGI
Sbjct: 4 NSASVRILIKGGKVVNDDCTHEADVYIENGIIQQVGRELMIPGGAKVIDATGKLVIPGGI 63
Query: 185 DVNTYLQKPSQGMTAADDFFQGTRAALVGGTTMIIDHVVPEPGSSLLTSFEKWHEAADTK 244
D +T+ + T DDF+ GT+AALVGGTTMII HV+P+ +SL+ ++EK AD K
Sbjct: 64 DTSTHFHQTFMNATCVDDFYHGTKAALVGGTTMIIGHVLPDKETSLVDAYEKCRGLADPK 123
Query: 245 SCCDYSLHVDITSWYDGVREELEVLVQDKGVNSFQVYMAYKDVYQMSDSQLYEAFTFLKG 304
CCDY+LHV IT W V+ E+E LV++KGVNSFQ++M YKD+Y + DS+LY+ K
Sbjct: 124 VCCDYALHVGITWWAPKVKAEMETLVREKGVNSFQMFMTYKDLYMLRDSELYQVLHACKD 183
Query: 305 LGAVILVHAENGDLIAQEQKRILEMGITGPEGHALSRPEELEAEAVFRAITIAGRINCPV 364
+GA+ VHAENG+L+A+ K L++GITGPEG +SRPEELEAEA R ITIA R +CP+
Sbjct: 184 IGAIARVHAENGELVAEGAKEALDLGITGPEGIEISRPEELEAEATHRVITIANRTHCPI 243
Query: 365 YITKVMSKSAADIIALARKKGPLVFGEPIAASLGTDGTHYWSKNWAKAAAFVTSPPLSPD 424
Y+ V S SA D+IA A+ +G +V E A G HY+ ++W+ AAA+VT PPL D
Sbjct: 244 YLVNVSSISAGDVIAAAKMQGKVVLAETTTAHATLTGLHYYHQDWSHAAAYVTVPPLRLD 303
Query: 425 PTTPDYLTSLLACGDLQVTGSGHCPYSTAQKAVGKDNFTLIPEGVNGIEERMTVVWDKAV 484
T YL SLLA L + S H P++T QKA+GK++FT IP GV+G+++RM+V+W++ V
Sbjct: 304 TNTSTYLMSLLANDTLNIVASDHRPFTTKQKAMGKEDFTKIPHGVSGVQDRMSVIWERGV 363
Query: 485 ATGKMDENQFVAVTSTNAAKIFNLYPRKGRIAVGSDADVVIWDPDKLKTITAKSHKSAVE 544
GKMDEN+FVAVTS+NAAK+ NLYPRKGRI G+DADVV+WDP+ KTI+A + +
Sbjct: 364 VGGKMDENRFVAVTSSNAAKLLNLYPRKGRIIPGADADVVVWDPEATKTISASTQVQGGD 423
Query: 545 YNIFEGMECHGSPLVVISQGKIVFEDGNINVNKGMGRFIPRKAFPEHLYQRVKIRNKVFG 604
+N++E M CHG PLV IS+G++V+E+G +G G+F P ++FP+ +Y+++ R K
Sbjct: 424 FNLYENMRCHGVPLVTISRGRVVYENGVFMCAEGTGKFCPLRSFPDTVYKKLVQREKTLK 483
Query: 605 LQGVSRGMYDGPVYEV--PATPKYATPAPSAKSSP-SKHQPPPIRNLHQSNFSLSGAQID 661
++GV R Y G V V P + TP + P ++H +R+LH+S+FSLSG+QID
Sbjct: 484 VRGVDRTPYLGDVAVVVHPGKKEMGTPLADTPTRPVTRH--GGMRDLHESSFSLSGSQID 541
Query: 662 DNNPRRTGHRIVAPPGGRSN 681
D+ P+R RI+APPGGRS+
Sbjct: 542 DHVPKRASARILAPPGGRSS 561
>gi|18105007 carbamoylphosphate synthetase 2/aspartate
transcarbamylase/dihydroorotase [Homo sapiens]
Length = 2225
Score = 42.4 bits (98), Expect = 0.001
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 180 IPGGIDVNTYLQKPSQGMTAADDFFQGTRAALVGGTTMIIDHVVPEPGSSLLTSFEKWHE 239
+PG IDV+ +L++P G T +DF GT AAL GG TM+ P + +
Sbjct: 1464 LPGLIDVHVHLREP--GGTHKEDFASGTAAALAGGITMVCAMPNTRPPIIDAPALALAQK 1521
Query: 240 AADTKSCCDYSLHVDITS 257
A+ + CD++L + +S
Sbjct: 1522 LAEAGARCDFALFLGASS 1539
Score = 40.4 bits (93), Expect = 0.005
Identities = 36/149 (24%), Positives = 69/149 (46%), Gaps = 17/149 (11%)
Query: 445 SGHCPYSTAQKAVGKDNFTLIPEGVNGIEERMTVVWDKAVATGKMDENQFVAVTSTNAAK 504
S H P++ +K + P G G+E + ++ AV+ G++ + + N +
Sbjct: 1685 SDHAPHTLEEKCGSRP-----PPGFPGLETMLPLLLT-AVSEGRLSLDDLLQRLHHNPRR 1738
Query: 505 IFNLYPRKGRIAVGSDADVVIWDPDKLKTITAKSHKSAVEYNIFEGMECHGSPLVVISQG 564
IF+L P++ D V + D + TI + S + FEG + G+ V+ +G
Sbjct: 1739 IFHLPPQE-------DTYVEV-DLEHEWTIPSHMPFSKAHWTPFEGQKVKGTVRRVVLRG 1790
Query: 565 KIVFEDGNINVNKGMGRFI---PRKAFPE 590
++ + DG + V G G+ + P+ A P+
Sbjct: 1791 EVAYIDGQVLVPPGYGQDVRKWPQGAVPQ 1819
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 34.7 bits (78), Expect = 0.30
Identities = 34/91 (37%), Positives = 37/91 (40%), Gaps = 10/91 (10%)
Query: 41 GAYENKTIDFDAYSVGRRGSARTPRSAGRPD---AVGLPGPGGSEDTASDVSEPSGSAVS 97
GA N DA + G GS P G P A GLPGP G A P G A
Sbjct: 701 GAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAG----PKG-ADG 755
Query: 98 SPGERDERPPTLRIRRPAPRDLPLGRDNGQS 128
SPG+ R T I P P P D G+S
Sbjct: 756 SPGKDGVRGLTGPIGPPGPAGAP--GDKGES 784
Score = 31.2 bits (69), Expect = 3.3
Identities = 17/53 (32%), Positives = 21/53 (39%)
Query: 54 SVGRRGSARTPRSAGRPDAVGLPGPGGSEDTASDVSEPSGSAVSSPGERDERP 106
S G G +P AGRP GLPG G + + P +D RP
Sbjct: 513 SPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRP 565
Score = 30.8 bits (68), Expect = 4.4
Identities = 22/66 (33%), Positives = 23/66 (34%), Gaps = 1/66 (1%)
Query: 56 GRRGSARTPRSAGRPDAVGLPGPGGSEDTASDVSEPS-GSAVSSPGERDERPPTLRIRRP 114
G RGSA P + G P A G GP G A P G R E P R
Sbjct: 863 GARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEV 922
Query: 115 APRDLP 120
P P
Sbjct: 923 GPPGPP 928
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 34.7 bits (78), Expect = 0.30
Identities = 20/39 (51%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 56 GRRGSARTPRSAGRPDAVGLPGPGGSEDTASDVSEPSGS 94
G RGS P +AG P A GLPGP GS PSGS
Sbjct: 861 GERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPG-PSGS 898
Score = 32.7 bits (73), Expect = 1.1
Identities = 28/90 (31%), Positives = 31/90 (34%), Gaps = 19/90 (21%)
Query: 56 GRRGSARTPRSAGRPDAVGLPGPGGSEDT------------------ASDVSEPSG-SAV 96
G RG A P G A G PGP G+ T D EP G A
Sbjct: 693 GLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGAD 752
Query: 97 SSPGERDERPPTLRIRRPAPRDLPLGRDNG 126
PG+ R PT I P P P + G
Sbjct: 753 GVPGKDGPRGPTGPIGPPGPAGQPGDKGEG 782
Score = 32.3 bits (72), Expect = 1.5
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 56 GRRGSARTPRSAGRPDAVGLPGPGGSEDTASDVSEPSGSAVSSPGERDERPP 107
G RGS P G P G PG G++ P + +PG+R E P
Sbjct: 324 GARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGSN--GAPGQRGEPGP 373
Score = 29.6 bits (65), Expect = 9.7
Identities = 19/62 (30%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
Query: 56 GRRGSARTPRSAGRPDAVGLPGPGGSEDTASDVSEPSG-SAVSSPGERDERPPTLRIRRP 114
G +G P AG P G GP G + + P G A PG R P P
Sbjct: 831 GEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNP 890
Query: 115 AP 116
P
Sbjct: 891 GP 892
Score = 29.6 bits (65), Expect = 9.7
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 56 GRRGSARTPRSAGRPDAVGLPGPGGSEDT--ASDVSEPSGSAVSSPGER 102
G G+ P +G P G PGP G+ + VS P G A PGE+
Sbjct: 885 GSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDA-GQPGEK 932
Score = 29.6 bits (65), Expect = 9.7
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 56 GRRGSARTPRSAGRPDAVGLPG----PGGSEDTASDVSEPSGSAVSSPG 100
G G+A P G P + GLPG PGG D + S + A PG
Sbjct: 1002 GLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPG 1050
>gi|239749538 PREDICTED: hypothetical protein XP_002347080 [Homo
sapiens]
Length = 400
Score = 34.3 bits (77), Expect = 0.39
Identities = 32/124 (25%), Positives = 48/124 (38%), Gaps = 20/124 (16%)
Query: 18 LARPGSAAQTPRQKYGGMFAAVEGAYENKTIDFDAYSVGRRGSARTPRSAGRPDAVGLPG 77
L+ G AQ P +++ + ++V +T+ RRGS RP V
Sbjct: 81 LSPAGRGAQRPPERF--LPSSVSAGSAARTL--------RRGSEARKAQTPRPAGVAQGS 130
Query: 78 PGGSEDTASDVSEPSGSAVSSPGERDERPPTLRIRRPAPRDLP------LGRDNGQSDRL 131
GG E + P G +S+ P +LR+ P PR P G G+ +
Sbjct: 131 GGGGERWLQGLGPPRGRGLSTA----PPPSSLRLLPPTPRPFPPAPAGGKGEGGGKESAV 186
Query: 132 LIKG 135
L KG
Sbjct: 187 LWKG 190
>gi|239743688 PREDICTED: hypothetical protein XP_002342946 [Homo
sapiens]
Length = 400
Score = 34.3 bits (77), Expect = 0.39
Identities = 32/124 (25%), Positives = 48/124 (38%), Gaps = 20/124 (16%)
Query: 18 LARPGSAAQTPRQKYGGMFAAVEGAYENKTIDFDAYSVGRRGSARTPRSAGRPDAVGLPG 77
L+ G AQ P +++ + ++V +T+ RRGS RP V
Sbjct: 81 LSPAGRGAQRPPERF--LPSSVSAGSAARTL--------RRGSEARKAQTPRPAGVAQGS 130
Query: 78 PGGSEDTASDVSEPSGSAVSSPGERDERPPTLRIRRPAPRDLP------LGRDNGQSDRL 131
GG E + P G +S+ P +LR+ P PR P G G+ +
Sbjct: 131 GGGGERWLQGLGPPRGRGLSTA----PPPSSLRLLPPTPRPFPPAPAGGKGEGGGKESAV 186
Query: 132 LIKG 135
L KG
Sbjct: 187 LWKG 190
>gi|47778921 alpha 1 type XIX collagen precursor [Homo sapiens]
Length = 1142
Score = 34.3 bits (77), Expect = 0.39
Identities = 26/89 (29%), Positives = 30/89 (33%), Gaps = 8/89 (8%)
Query: 54 SVGRRGSARTPRSAGR------PDAVGLPGPGGSEDTASDVSEPSGSAVSSPGERDERPP 107
S G RG P G P G PGP G P + GE+ P
Sbjct: 748 SKGERGYPGIPGEKGDEGLQGIPGIPGAPGPTGPPGLMGRTGHPGPTGAK--GEKGSDGP 805
Query: 108 TLRIRRPAPRDLPLGRDNGQSDRLLIKGG 136
+ P P +P NG S IKGG
Sbjct: 806 PGKPGPPGPPGIPFNERNGMSSLYKIKGG 834
>gi|4507693 tuberous sclerosis 1 protein isoform 1 [Homo sapiens]
Length = 1164
Score = 33.9 bits (76), Expect = 0.51
Identities = 26/108 (24%), Positives = 40/108 (37%), Gaps = 3/108 (2%)
Query: 56 GRRGSARTPRSAGRPDAVGLPGPGGSEDTASDVSEPSGSAVSSPGERDERPPTLRIRRPA 115
G G +TPR + + G G GGS ++S++S P G R T A
Sbjct: 1013 GHNGETKTPRPSSARGSSGSRGGGGSSSSSSELSTPEKPPHQRAGPFSSRWETTMGEASA 1072
Query: 116 PRDLPLGRDNGQSDRLLIKGGRIINDDQSLYADVYLEDGLIKQIGENL 163
+G L +K + + D EDG+ + E+L
Sbjct: 1073 SIPTTVGSLPSSKSFLGMKARELFRNKSESQCD---EDGMTSSLSESL 1117
>gi|241666464 tuberous sclerosis 1 protein isoform 4 [Homo sapiens]
Length = 1113
Score = 33.9 bits (76), Expect = 0.51
Identities = 26/108 (24%), Positives = 40/108 (37%), Gaps = 3/108 (2%)
Query: 56 GRRGSARTPRSAGRPDAVGLPGPGGSEDTASDVSEPSGSAVSSPGERDERPPTLRIRRPA 115
G G +TPR + + G G GGS ++S++S P G R T A
Sbjct: 962 GHNGETKTPRPSSARGSSGSRGGGGSSSSSSELSTPEKPPHQRAGPFSSRWETTMGEASA 1021
Query: 116 PRDLPLGRDNGQSDRLLIKGGRIINDDQSLYADVYLEDGLIKQIGENL 163
+G L +K + + D EDG+ + E+L
Sbjct: 1022 SIPTTVGSLPSSKSFLGMKARELFRNKSESQCD---EDGMTSSLSESL 1066
>gi|241666462 tuberous sclerosis 1 protein isoform 3 [Homo sapiens]
Length = 1163
Score = 33.9 bits (76), Expect = 0.51
Identities = 26/108 (24%), Positives = 40/108 (37%), Gaps = 3/108 (2%)
Query: 56 GRRGSARTPRSAGRPDAVGLPGPGGSEDTASDVSEPSGSAVSSPGERDERPPTLRIRRPA 115
G G +TPR + + G G GGS ++S++S P G R T A
Sbjct: 1012 GHNGETKTPRPSSARGSSGSRGGGGSSSSSSELSTPEKPPHQRAGPFSSRWETTMGEASA 1071
Query: 116 PRDLPLGRDNGQSDRLLIKGGRIINDDQSLYADVYLEDGLIKQIGENL 163
+G L +K + + D EDG+ + E+L
Sbjct: 1072 SIPTTVGSLPSSKSFLGMKARELFRNKSESQCD---EDGMTSSLSESL 1116
>gi|116268127 kinase non-catalytic C-lobe domain (KIND) containing 1
isoform a [Homo sapiens]
Length = 1749
Score = 33.9 bits (76), Expect = 0.51
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 10/60 (16%)
Query: 69 RPDAVGL----------PGPGGSEDTASDVSEPSGSAVSSPGERDERPPTLRIRRPAPRD 118
RPDA+G P P S+ T EP G + GERD++ P RP P D
Sbjct: 812 RPDALGPTTAHHGPRHPPKPPRSKATERPGQEPEGPGATPAGERDDQSPDSVPERPRPAD 871
>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 33.5 bits (75), Expect = 0.67
Identities = 24/63 (38%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 58 RGSARTPRSAGRPDAVGLPGPGGSEDTASDVSEPSGSA---VSSPGERDERPPTLRIRRP 114
R +A +G LP PGG +A S PSG V SPG R P R R P
Sbjct: 112 RSTANRDNDSGGSRPPLLP-PGGRSTSAKPFSPPSGPGRFPVPSPGHRSGPPEPQRNRMP 170
Query: 115 APR 117
PR
Sbjct: 171 PPR 173
>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 33.5 bits (75), Expect = 0.67
Identities = 24/63 (38%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 58 RGSARTPRSAGRPDAVGLPGPGGSEDTASDVSEPSGSA---VSSPGERDERPPTLRIRRP 114
R +A +G LP PGG +A S PSG V SPG R P R R P
Sbjct: 112 RSTANRDNDSGGSRPPLLP-PGGRSTSAKPFSPPSGPGRFPVPSPGHRSGPPEPQRNRMP 170
Query: 115 APR 117
PR
Sbjct: 171 PPR 173
>gi|26051235 nucleoporin 133kDa [Homo sapiens]
Length = 1156
Score = 33.5 bits (75), Expect = 0.67
Identities = 19/40 (47%), Positives = 22/40 (55%)
Query: 60 SARTPRSAGRPDAVGLPGPGGSEDTASDVSEPSGSAVSSP 99
S RTP + R + GPG + TAS P GSAVSSP
Sbjct: 7 SPRTPGTGSRRGPLAGLGPGSTPRTASRKGLPLGSAVSSP 46
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 33.1 bits (74), Expect = 0.88
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 56 GRRGSARTPRSAGRPDAVGLPGPGGSEDTASDVSEPSGSAVSSP-GERDERPPTLRIRRP 114
G +G + G P +GL GP G + D P S P GE+ P+ I P
Sbjct: 1471 GLKGDSGPKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSSGPKGEQGITGPSGPIGPP 1530
Query: 115 APRDLP 120
P LP
Sbjct: 1531 GPPGLP 1536
Score = 29.6 bits (65), Expect = 9.7
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 54 SVGRRGSARTPRSAGRPDAVGLPGPGGS 81
+VG +G P G P A GLPGP G+
Sbjct: 710 NVGPQGEPGPPGQQGNPGAQGLPGPQGA 737
Score = 29.6 bits (65), Expect = 9.7
Identities = 23/78 (29%), Positives = 28/78 (35%), Gaps = 3/78 (3%)
Query: 52 AYSVGRRGSARTPRSAGRPDAVGLPGPGGSEDTASDVSEPSGSAVSSPGERDERPPTLRI 111
A S G RG A G P G PGP G A + P P RD + +
Sbjct: 1086 AGSPGERGPAGAAGPIGIP---GRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGLQGPVGL 1142
Query: 112 RRPAPRDLPLGRDNGQSD 129
PA P G D + +
Sbjct: 1143 PGPAGPVGPPGEDGDKGE 1160
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 32.7 bits (73), Expect = 1.1
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 56 GRRGSARTPRSAGRPDAVGLPGPGGS-----EDTASDVSEPSGSAVSSPGERDERPP 107
G G+ + G P AVG PGP G+ E A+ + P+G SPGER E P
Sbjct: 664 GEIGNPGRDGARGAPGAVGAPGPAGATGDRGEAGAAGPAGPAGPR-GSPGERGEVGP 719
Score = 31.2 bits (69), Expect = 3.3
Identities = 24/71 (33%), Positives = 29/71 (40%), Gaps = 9/71 (12%)
Query: 21 PGSAAQTPRQKYGGMFAAVEGAYENKTIDFDAYSVGRRGSARTPRSAGRPDAVGLPGPGG 80
PG GG FAA Y+ K + +G G PR G P A G PGP G
Sbjct: 62 PGPPGPPGPPGLGGNFAA---QYDGKGVGLGPGPMGLMG----PR--GPPGAAGAPGPQG 112
Query: 81 SEDTASDVSEP 91
+ A + EP
Sbjct: 113 FQGPAGEPGEP 123
Score = 29.6 bits (65), Expect = 9.7
Identities = 20/71 (28%), Positives = 25/71 (35%), Gaps = 9/71 (12%)
Query: 54 SVGRRGSARTPRSAGRPDAVGLPGPGGSEDTASDVSEPSGSAVSSPGERDERPPTLRIRR 113
S G RG + G P +G+ GP G+ V P + RD P
Sbjct: 878 SRGERGLPGVAGAVGEPGPLGIAGPPGARGPPGAVGSPGVNGAPGEAGRDGNP------- 930
Query: 114 PAPRDLPLGRD 124
D P GRD
Sbjct: 931 --GNDGPPGRD 939
>gi|223972612 Crm, cramped-like [Homo sapiens]
Length = 1269
Score = 32.0 bits (71), Expect = 2.0
Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 8/76 (10%)
Query: 58 RGSARTPRSAGRPDAVGLPGPGGSEDTASDVSEPSGS-------AVSSPGERDERPPTLR 110
RG + PRS VG P P +S S P + ++SSP D PP +
Sbjct: 458 RGQVKCPRSGAEGKGVGRPPPAADALQSSGESSPESAPGEGAALSLSSPDAPDRPPPRHQ 517
Query: 111 IRRPAPRDLPL-GRDN 125
P P GRD+
Sbjct: 518 DTGPCLEKTPAEGRDS 533
>gi|169167808 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 32.0 bits (71), Expect = 2.0
Identities = 39/134 (29%), Positives = 51/134 (38%), Gaps = 16/134 (11%)
Query: 22 GSAAQTPRQKYGGMFAAVEGAYENKTIDFDAYSVGRRGSARTPRSAGRPDAVGLPGPGGS 81
GS TPR K G A A + + R G R SA +PG GG
Sbjct: 37 GSGVLTPRAK-GSTSRAESSAARGARVRAPGRTC-RGGPGRGYESAAGNSLPSVPGGGGR 94
Query: 82 EDTASDVSEPS--GSAVSS-------PGERDERPPTLRIRRPAPRD---LPLGRDNGQSD 129
+ S+P G A + PG+ +P T R R APR LP R +G +
Sbjct: 95 DPGGGAASQPGLCGRAGTGEKRKWERPGKETWKPKTRRPRLRAPRAALLLPRPRTHGPAG 154
Query: 130 RLLIKGGRIINDDQ 143
+GG + D Q
Sbjct: 155 G--TRGGNLDTDTQ 166
>gi|113417039 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 32.0 bits (71), Expect = 2.0
Identities = 39/134 (29%), Positives = 51/134 (38%), Gaps = 16/134 (11%)
Query: 22 GSAAQTPRQKYGGMFAAVEGAYENKTIDFDAYSVGRRGSARTPRSAGRPDAVGLPGPGGS 81
GS TPR K G A A + + R G R SA +PG GG
Sbjct: 37 GSGVLTPRAK-GSTSRAESSAARGARVRAPGRTC-RGGPGRGYESAAGNSLPSVPGGGGR 94
Query: 82 EDTASDVSEPS--GSAVSS-------PGERDERPPTLRIRRPAPRD---LPLGRDNGQSD 129
+ S+P G A + PG+ +P T R R APR LP R +G +
Sbjct: 95 DPGGGAASQPGLCGRAGTGEKRKWERPGKETWKPKTRRPRLRAPRAALLLPRPRTHGPAG 154
Query: 130 RLLIKGGRIINDDQ 143
+GG + D Q
Sbjct: 155 G--TRGGNLDTDTQ 166
>gi|113416520 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 32.0 bits (71), Expect = 2.0
Identities = 39/134 (29%), Positives = 51/134 (38%), Gaps = 16/134 (11%)
Query: 22 GSAAQTPRQKYGGMFAAVEGAYENKTIDFDAYSVGRRGSARTPRSAGRPDAVGLPGPGGS 81
GS TPR K G A A + + R G R SA +PG GG
Sbjct: 37 GSGVLTPRAK-GSTSRAESSAARGARVRAPGRTC-RGGPGRGYESAAGNSLPSVPGGGGR 94
Query: 82 EDTASDVSEPS--GSAVSS-------PGERDERPPTLRIRRPAPRD---LPLGRDNGQSD 129
+ S+P G A + PG+ +P T R R APR LP R +G +
Sbjct: 95 DPGGGAASQPGLCGRAGTGEKRKWERPGKETWKPKTRRPRLRAPRAALLLPRPRTHGPAG 154
Query: 130 RLLIKGGRIINDDQ 143
+GG + D Q
Sbjct: 155 G--TRGGNLDTDTQ 166
>gi|207028781 zinc finger and SCAN domain containing 5B [Homo
sapiens]
Length = 495
Score = 32.0 bits (71), Expect = 2.0
Identities = 35/125 (28%), Positives = 49/125 (39%), Gaps = 18/125 (14%)
Query: 21 PGSAAQTPR-QKYGGMFAAVEGAYENK-----TIDFDAYSVGRRGSARTPRSAGRPDAVG 74
PG ++ P+ K + A EG K +D D S S R DA+
Sbjct: 233 PGLSSPEPQLPKSPNLVRAKEGKEPQKRASVENVDADTPSACVVEREALTHSGNRGDALN 292
Query: 75 LPGPGGSEDTASDVS--EPSGSAV-----SSPGERDERPPTLRIRRPAPRDLPLGRDNGQ 127
L P S+ AS +S EP G A SPG+ + P + P P P+ +GQ
Sbjct: 293 LSSPKRSKPDASSISQEEPQGEATPVGNRESPGQAEINP----VHSPGPAG-PVSHPDGQ 347
Query: 128 SDRLL 132
+ L
Sbjct: 348 EAKAL 352
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 31.6 bits (70), Expect = 2.6
Identities = 20/60 (33%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 56 GRRGSARTPRSAGRPDAVGLPGPGGSEDTASDVSEPSGSAVSSP-GERDERPPTLRIRRP 114
G RG+ P + G P A G GP GS P S P G R + P R P
Sbjct: 885 GARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEP 944
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 31.6 bits (70), Expect = 2.6
Identities = 20/60 (33%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 56 GRRGSARTPRSAGRPDAVGLPGPGGSEDTASDVSEPSGSAVSSP-GERDERPPTLRIRRP 114
G RG+ P + G P A G GP GS P S P G R + P R P
Sbjct: 816 GARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEP 875
>gi|239742880 PREDICTED: hypothetical protein XP_002342669 [Homo
sapiens]
Length = 205
Score = 31.6 bits (70), Expect = 2.6
Identities = 24/64 (37%), Positives = 26/64 (40%), Gaps = 8/64 (12%)
Query: 72 AVGLPGPGG--SEDTASDVSEPSGSAVSSP----GERDERPPTLRIRRPAPRDLPLGRDN 125
A P P G E +V EPSG P GER RP L R P P RDN
Sbjct: 115 AAASPSPAGHAKESRGREVWEPSGEGSPRPGPQDGERQGRPHLL--RGPQGARAPAARDN 172
Query: 126 GQSD 129
+D
Sbjct: 173 KNAD 176
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.134 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,249,646
Number of Sequences: 37866
Number of extensions: 1511784
Number of successful extensions: 8226
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 71
Number of HSP's that attempted gapping in prelim test: 7264
Number of HSP's gapped (non-prelim): 1053
length of query: 686
length of database: 18,247,518
effective HSP length: 109
effective length of query: 577
effective length of database: 14,120,124
effective search space: 8147311548
effective search space used: 8147311548
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.