Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 62420877
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|62420877 electron-transfer-flavoprotein, beta polypeptide
isoform 2 [Homo sapiens]
(346 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|62420877 electron-transfer-flavoprotein, beta polypeptide iso... 687 0.0
gi|4503609 electron-transfer-flavoprotein, beta polypeptide isof... 461 e-130
gi|113421234 PREDICTED: similar to NG5 protein [Homo sapiens] 38 0.012
gi|113420954 PREDICTED: similar to NG5 protein [Homo sapiens] 38 0.012
gi|24308414 solute carrier family 10, member 4 [Homo sapiens] 37 0.020
gi|31652264 RNA binding motif protein 26 [Homo sapiens] 37 0.034
gi|169173184 PREDICTED: hypothetical protein [Homo sapiens] 35 0.076
gi|121114287 apoptosis-stimulating protein of p53, 1 [Homo sapiens] 35 0.076
gi|23510333 pygopus homolog 2 [Homo sapiens] 35 0.076
gi|239749538 PREDICTED: hypothetical protein XP_002347080 [Homo ... 34 0.17
gi|239743688 PREDICTED: hypothetical protein XP_002342946 [Homo ... 34 0.17
gi|148539870 histone deacetylase 7 isoform d [Homo sapiens] 33 0.29
gi|169234807 histone deacetylase 7 isoform a [Homo sapiens] 33 0.29
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa... 33 0.29
gi|163965366 nascent polypeptide-associated complex alpha subuni... 33 0.29
gi|148539855 epidermal growth factor receptor pathway substrate ... 33 0.38
gi|148539853 epidermal growth factor receptor pathway substrate ... 33 0.38
gi|149944516 tet oncogene family member 3 [Homo sapiens] 32 0.64
gi|22749325 zinc finger protein 48 [Homo sapiens] 32 0.64
gi|7662486 ring finger protein 44 [Homo sapiens] 32 0.64
gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 32 0.84
gi|169207592 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 32 0.84
gi|169207014 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 32 0.84
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 32 0.84
gi|239747100 PREDICTED: hypothetical protein XP_002344493 [Homo ... 32 1.1
gi|42544243 dynamin 3 isoform a [Homo sapiens] 32 1.1
gi|209915561 dynamin 3 isoform b [Homo sapiens] 32 1.1
gi|62988322 TSPY-like 1 [Homo sapiens] 32 1.1
gi|26667199 calcium/calmodulin-dependent protein kinase II gamma... 31 1.4
gi|239757043 PREDICTED: functional smad suppressing element 18 [... 31 1.4
>gi|62420877 electron-transfer-flavoprotein, beta polypeptide
isoform 2 [Homo sapiens]
Length = 346
Score = 687 bits (1773), Expect = 0.0
Identities = 346/346 (100%), Positives = 346/346 (100%)
Query: 1 MYLSLWVTINTVNLRNTLSGLRGAVTTVGMIKSDVPGTQEWLDERRRQGDLPLPTNSNPV 60
MYLSLWVTINTVNLRNTLSGLRGAVTTVGMIKSDVPGTQEWLDERRRQGDLPLPTNSNPV
Sbjct: 1 MYLSLWVTINTVNLRNTLSGLRGAVTTVGMIKSDVPGTQEWLDERRRQGDLPLPTNSNPV 60
Query: 61 LSLELCDPGQGPAPFQAVVVLIQPGRGLALRPPPSCLFPPDPTPSPPAGQIRVKPDRTGV 120
LSLELCDPGQGPAPFQAVVVLIQPGRGLALRPPPSCLFPPDPTPSPPAGQIRVKPDRTGV
Sbjct: 61 LSLELCDPGQGPAPFQAVVVLIQPGRGLALRPPPSCLFPPDPTPSPPAGQIRVKPDRTGV 120
Query: 121 VTDGVKHSMNPFCEIAVEEAVRLKEKKLVKEVIAVSCGPAQCQETIRTALAMGADRGIHV 180
VTDGVKHSMNPFCEIAVEEAVRLKEKKLVKEVIAVSCGPAQCQETIRTALAMGADRGIHV
Sbjct: 121 VTDGVKHSMNPFCEIAVEEAVRLKEKKLVKEVIAVSCGPAQCQETIRTALAMGADRGIHV 180
Query: 181 EVPPAEAERLGPLQVARVLAKLAEKEKVDLVLLGKQAIDDDCNQTGQMTAGFLDWPQGTF 240
EVPPAEAERLGPLQVARVLAKLAEKEKVDLVLLGKQAIDDDCNQTGQMTAGFLDWPQGTF
Sbjct: 181 EVPPAEAERLGPLQVARVLAKLAEKEKVDLVLLGKQAIDDDCNQTGQMTAGFLDWPQGTF 240
Query: 241 ASQVTLEGDKLKVEREIDGGLETLRLKLPAVVTADLRLNEPRYATLPNIMKAKKKKIEVI 300
ASQVTLEGDKLKVEREIDGGLETLRLKLPAVVTADLRLNEPRYATLPNIMKAKKKKIEVI
Sbjct: 241 ASQVTLEGDKLKVEREIDGGLETLRLKLPAVVTADLRLNEPRYATLPNIMKAKKKKIEVI 300
Query: 301 KPGDLGVDLTSKLSVISVEDPPQRTAGVKVETTEDLVAKLKEIGRI 346
KPGDLGVDLTSKLSVISVEDPPQRTAGVKVETTEDLVAKLKEIGRI
Sbjct: 301 KPGDLGVDLTSKLSVISVEDPPQRTAGVKVETTEDLVAKLKEIGRI 346
>gi|4503609 electron-transfer-flavoprotein, beta polypeptide isoform
1 [Homo sapiens]
Length = 255
Score = 461 bits (1186), Expect = e-130
Identities = 237/239 (99%), Positives = 238/239 (99%)
Query: 108 AGQIRVKPDRTGVVTDGVKHSMNPFCEIAVEEAVRLKEKKLVKEVIAVSCGPAQCQETIR 167
A +IRVKPDRTGVVTDGVKHSMNPFCEIAVEEAVRLKEKKLVKEVIAVSCGPAQCQETIR
Sbjct: 17 AVKIRVKPDRTGVVTDGVKHSMNPFCEIAVEEAVRLKEKKLVKEVIAVSCGPAQCQETIR 76
Query: 168 TALAMGADRGIHVEVPPAEAERLGPLQVARVLAKLAEKEKVDLVLLGKQAIDDDCNQTGQ 227
TALAMGADRGIHVEVPPAEAERLGPLQVARVLAKLAEKEKVDLVLLGKQAIDDDCNQTGQ
Sbjct: 77 TALAMGADRGIHVEVPPAEAERLGPLQVARVLAKLAEKEKVDLVLLGKQAIDDDCNQTGQ 136
Query: 228 MTAGFLDWPQGTFASQVTLEGDKLKVEREIDGGLETLRLKLPAVVTADLRLNEPRYATLP 287
MTAGFLDWPQGTFASQVTLEGDKLKVEREIDGGLETLRLKLPAVVTADLRLNEPRYATLP
Sbjct: 137 MTAGFLDWPQGTFASQVTLEGDKLKVEREIDGGLETLRLKLPAVVTADLRLNEPRYATLP 196
Query: 288 NIMKAKKKKIEVIKPGDLGVDLTSKLSVISVEDPPQRTAGVKVETTEDLVAKLKEIGRI 346
NIMKAKKKKIEVIKPGDLGVDLTSKLSVISVEDPPQRTAGVKVETTEDLVAKLKEIGRI
Sbjct: 197 NIMKAKKKKIEVIKPGDLGVDLTSKLSVISVEDPPQRTAGVKVETTEDLVAKLKEIGRI 255
>gi|113421234 PREDICTED: similar to NG5 protein [Homo sapiens]
Length = 288
Score = 38.1 bits (87), Expect = 0.012
Identities = 24/50 (48%), Positives = 28/50 (56%), Gaps = 8/50 (16%)
Query: 67 DPGQGPA---PFQAVVVLIQPGRGLALRPPPSCLFPPDPTP----SPPAG 109
DP P PF V V++QP AL PPP+ L+P PTP SPPAG
Sbjct: 136 DPKAAPLLYPPFPQVPVVLQPAPS-ALFPPPAQLYPAAPTPPALFSPPAG 184
>gi|113420954 PREDICTED: similar to NG5 protein [Homo sapiens]
Length = 288
Score = 38.1 bits (87), Expect = 0.012
Identities = 24/50 (48%), Positives = 28/50 (56%), Gaps = 8/50 (16%)
Query: 67 DPGQGPA---PFQAVVVLIQPGRGLALRPPPSCLFPPDPTP----SPPAG 109
DP P PF V V++QP AL PPP+ L+P PTP SPPAG
Sbjct: 136 DPKAAPLLYPPFPQVPVVLQPAPS-ALFPPPAQLYPAAPTPPALFSPPAG 184
>gi|24308414 solute carrier family 10, member 4 [Homo sapiens]
Length = 437
Score = 37.4 bits (85), Expect = 0.020
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Query: 84 PGRGLALRPPPSCLFPPDPTPSPPAGQIRVKPDRTGVVTDGVKHSMNPF 132
PG GL+L P PS F P PTP+P +P +G+ H +PF
Sbjct: 44 PGPGLSLGPGPSFGFSPGPTPTP-------EPTTSGLAGGAASHGPSPF 85
>gi|31652264 RNA binding motif protein 26 [Homo sapiens]
Length = 980
Score = 36.6 bits (83), Expect = 0.034
Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 48 QGDL-PLPTNSNPVLSLELCDPGQGPAPFQAVVVLIQPGRGL-----ALRPPPSCLFPPD 101
+GD+ P S+PV+ ++ PG P P Q VV P GL L PPP L PP
Sbjct: 305 RGDMCPFDHGSDPVVVEDVNLPGMLPFPAQPPVVEGPPPPGLPPPPPILTPPPVNLRPPV 364
Query: 102 PTPSP 106
P P P
Sbjct: 365 PPPGP 369
>gi|169173184 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1230
Score = 35.4 bits (80), Expect = 0.076
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 9/83 (10%)
Query: 29 GMIKSDVPGTQEWLDERRRQGDLPL----PTNSNPVLSLELCDPGQGPAPFQAVVVLIQP 84
GM+ S T + R GD PL P P+L + D + PAP+ A+++L P
Sbjct: 857 GMLSSHSRTTASGDERGRELGDTPLASSCPWGPPPLLKVFSSDSPRDPAPWLALLLLDAP 916
Query: 85 --GRGLALRP---PPSCLFPPDP 102
G G + P PSC PP P
Sbjct: 917 ELGPGDGVGPGWRVPSCGLPPGP 939
>gi|121114287 apoptosis-stimulating protein of p53, 1 [Homo sapiens]
Length = 1090
Score = 35.4 bits (80), Expect = 0.076
Identities = 26/78 (33%), Positives = 34/78 (43%), Gaps = 13/78 (16%)
Query: 36 PGTQEWLDERRRQGDLPLPTNSNPVLSLELCDPGQGPAPFQAVVVLIQPGRGLALRP--- 92
PG+ L ERR++G LP P+ P P G P QPG ++
Sbjct: 473 PGSTSSL-ERRKEGSLPRPSAGLPSRQRPTLLPATGSTP--------QPGSSQQIQQRIS 523
Query: 93 -PPSCLFPPDPTPSPPAG 109
PPS +PP P+ PAG
Sbjct: 524 VPPSPTYPPAGPPAFPAG 541
>gi|23510333 pygopus homolog 2 [Homo sapiens]
Length = 406
Score = 35.4 bits (80), Expect = 0.076
Identities = 26/70 (37%), Positives = 31/70 (44%), Gaps = 9/70 (12%)
Query: 49 GDLPLPTNSNPVLSLELCDPGQ--GPAPFQAVVVLIQPGRGLALRPPPSCLFP-PDPTPS 105
G P P LS PG GP+P Q +PG+GL PP + FP PDP
Sbjct: 199 GQPPRAELGPPSLSQRFAQPGAPFGPSPLQ------RPGQGLPSLPPNTSPFPGPDPGFP 252
Query: 106 PPAGQIRVKP 115
P G+ KP
Sbjct: 253 GPGGEDGGKP 262
>gi|239749538 PREDICTED: hypothetical protein XP_002347080 [Homo
sapiens]
Length = 400
Score = 34.3 bits (77), Expect = 0.17
Identities = 16/26 (61%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Query: 85 GRGLALRPPPSC--LFPPDPTPSPPA 108
GRGL+ PPPS L PP P P PPA
Sbjct: 146 GRGLSTAPPPSSLRLLPPTPRPFPPA 171
>gi|239743688 PREDICTED: hypothetical protein XP_002342946 [Homo
sapiens]
Length = 400
Score = 34.3 bits (77), Expect = 0.17
Identities = 16/26 (61%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Query: 85 GRGLALRPPPSC--LFPPDPTPSPPA 108
GRGL+ PPPS L PP P P PPA
Sbjct: 146 GRGLSTAPPPSSLRLLPPTPRPFPPA 171
>gi|148539870 histone deacetylase 7 isoform d [Homo sapiens]
Length = 954
Score = 33.5 bits (75), Expect = 0.29
Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 20/123 (16%)
Query: 53 LPTNSNPVLSLE--------LCDPGQGPAPFQAVVVLIQPGR--GLALRPPPSCL----F 98
LP+ P+L L+ L PG GP PF L+ R G L P S
Sbjct: 304 LPSRLQPILLLDPSGSHAPLLTVPGLGPLPFHFAQSLMTTERLSGSGLHWPLSRTRSEPL 363
Query: 99 PPDPTPSPPAGQIRVKPDRTGVVTDGVKHSMNPFCEIAVEEAVRLKEKKLVKEVIAVSCG 158
PP T PP G ++ + ++ +K S P E RL++ +++ G
Sbjct: 364 PPSATAPPPPGPMQPRLEQLKTHVQVIKRSAKP------SEKPRLRQIPSAEDLETDGGG 417
Query: 159 PAQ 161
P Q
Sbjct: 418 PGQ 420
>gi|169234807 histone deacetylase 7 isoform a [Homo sapiens]
Length = 991
Score = 33.5 bits (75), Expect = 0.29
Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 20/123 (16%)
Query: 53 LPTNSNPVLSLE--------LCDPGQGPAPFQAVVVLIQPGR--GLALRPPPSCL----F 98
LP+ P+L L+ L PG GP PF L+ R G L P S
Sbjct: 341 LPSRLQPILLLDPSGSHAPLLTVPGLGPLPFHFAQSLMTTERLSGSGLHWPLSRTRSEPL 400
Query: 99 PPDPTPSPPAGQIRVKPDRTGVVTDGVKHSMNPFCEIAVEEAVRLKEKKLVKEVIAVSCG 158
PP T PP G ++ + ++ +K S P E RL++ +++ G
Sbjct: 401 PPSATAPPPPGPMQPRLEQLKTHVQVIKRSAKP------SEKPRLRQIPSAEDLETDGGG 454
Query: 159 PAQ 161
P Q
Sbjct: 455 PGQ 457
>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
sapiens]
Length = 2715
Score = 33.5 bits (75), Expect = 0.29
Identities = 29/125 (23%), Positives = 50/125 (40%), Gaps = 8/125 (6%)
Query: 76 QAVVVLIQPGRGLALRPPPSCLFPPDPTPSPPAGQIRVKPDRTGVVT-------DGVKHS 128
Q L+QP + L + P L PP P PP ++ P + GV+
Sbjct: 732 QTQAQLLQPLQALQTQLLPQALPPPQPQLQPPPSPQQMPPLEKARIAGVGSLPLSGVEEK 791
Query: 129 MNPFCEIAVEEAVRLKEKKLVKEVIAVSCGPAQCQETIRTALAMGADRG-IHVEVPPAEA 187
M + A + ++ +++ K ++ P E + A+ +DRG + E EA
Sbjct: 792 MFSLLKRAKVQLFKIDQQQQQKVAASMPLSPGGQMEEVAGAVKQISDRGPVRSEDESVEA 851
Query: 188 ERLGP 192
+R P
Sbjct: 852 KRERP 856
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 33.5 bits (75), Expect = 0.29
Identities = 22/64 (34%), Positives = 24/64 (37%)
Query: 54 PTNSNPVLSLELCDPGQGPAPFQAVVVLIQPGRGLALRPPPSCLFPPDPTPSPPAGQIRV 113
P + P L L P AP AVV P G A PP PP TP P G
Sbjct: 1267 PAATPPSLKGGLATPPHKGAPNPAVVTPPSPKGGPATSPPKGAPTPPAATPPSPKGSPGT 1326
Query: 114 KPDR 117
P +
Sbjct: 1327 PPPK 1330
>gi|148539855 epidermal growth factor receptor pathway substrate
8-like protein 1 isoform b [Homo sapiens]
Length = 596
Score = 33.1 bits (74), Expect = 0.38
Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 8/78 (10%)
Query: 40 EWLDERRRQGDLPLPTNSNPVLSLELCDPGQGPAPFQAVVVLIQPGRGLALRPPPSCLFP 99
E LD+ R+ + P + + P GP + P R L PPP P
Sbjct: 379 EVLDDSRKWWKVRDPAGQEGYVPYNILTPYPGPRLHHSQ----SPARSLNSTPPP----P 430
Query: 100 PDPTPSPPAGQIRVKPDR 117
P P P+PP R + DR
Sbjct: 431 PAPAPAPPPALARPRWDR 448
>gi|148539853 epidermal growth factor receptor pathway substrate
8-like protein 1 isoform a [Homo sapiens]
Length = 723
Score = 33.1 bits (74), Expect = 0.38
Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 8/78 (10%)
Query: 40 EWLDERRRQGDLPLPTNSNPVLSLELCDPGQGPAPFQAVVVLIQPGRGLALRPPPSCLFP 99
E LD+ R+ + P + + P GP + P R L PPP P
Sbjct: 506 EVLDDSRKWWKVRDPAGQEGYVPYNILTPYPGPRLHHSQ----SPARSLNSTPPP----P 557
Query: 100 PDPTPSPPAGQIRVKPDR 117
P P P+PP R + DR
Sbjct: 558 PAPAPAPPPALARPRWDR 575
>gi|149944516 tet oncogene family member 3 [Homo sapiens]
Length = 1660
Score = 32.3 bits (72), Expect = 0.64
Identities = 21/72 (29%), Positives = 31/72 (43%)
Query: 51 LPLPTNSNPVLSLELCDPGQGPAPFQAVVVLIQPGRGLALRPPPSCLFPPDPTPSPPAGQ 110
LP P++S P S L + PAPF++ ++ + P F PD + PPA
Sbjct: 235 LPQPSHSTPQASCPLPEALSPPAPFRSPQSYLRAPSWPVVPPEEHSSFAPDSSAFPPATP 294
Query: 111 IRVKPDRTGVVT 122
P+ G T
Sbjct: 295 RTEFPEAWGTDT 306
>gi|22749325 zinc finger protein 48 [Homo sapiens]
Length = 618
Score = 32.3 bits (72), Expect = 0.64
Identities = 26/79 (32%), Positives = 33/79 (41%), Gaps = 12/79 (15%)
Query: 46 RRQGDLP----LPTNSNPVLSLELCDPGQGPAPFQAVVVLIQPGRGLALRPPPSCLF--- 98
RR DL + T P L E G+G A A V ++ RG RPPP
Sbjct: 461 RRSSDLVKHHRVHTGEKPYLCPEC---GKGFADSSARVKHLRTHRGERARPPPPSTLLRP 517
Query: 99 --PPDPTPSPPAGQIRVKP 115
PP P P P ++R +P
Sbjct: 518 HNPPGPVPMAPRPRVRAQP 536
>gi|7662486 ring finger protein 44 [Homo sapiens]
Length = 432
Score = 32.3 bits (72), Expect = 0.64
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 63 LELCDPGQGPAPFQAVVVLIQPGRGLALRPPPSCLFPPDPTPSPPAGQ 110
++ C Q P P+QA LI + PPP+ PP PT P GQ
Sbjct: 157 IQACTMQQLPVPYQAYPHLISSDHYILHPPPPAP--PPQPTHMAPLGQ 202
>gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2790
Score = 32.0 bits (71), Expect = 0.84
Identities = 22/59 (37%), Positives = 22/59 (37%), Gaps = 5/59 (8%)
Query: 54 PTNSNPVLSLELCDPGQGPAPFQAVVVLIQPGRGLALRPPP-----SCLFPPDPTPSPP 107
P NS P S L P VV PGR L RP P S DP P PP
Sbjct: 2461 PFNSGPAASSGLLGLATSVLPTTTVVQTAGPGRPLPQRPMPDQTNTSTAGTTDPVPGPP 2519
Score = 30.0 bits (66), Expect = 3.2
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 46 RRQGDLPLPTNSNPVLSLELCDPGQGP--APFQAVVVLIQPGRGLALRPPPSCLFPPDPT 103
R D+PL +S + + GP A QA+++L + L+ PP+ + P PT
Sbjct: 383 RPSSDIPLDNSSTVNMEANVAQTEDGPPEAEVQALILLDEEVMALSPPSPPTATWDPSPT 442
>gi|169207592 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2706
Score = 32.0 bits (71), Expect = 0.84
Identities = 22/59 (37%), Positives = 22/59 (37%), Gaps = 5/59 (8%)
Query: 54 PTNSNPVLSLELCDPGQGPAPFQAVVVLIQPGRGLALRPPP-----SCLFPPDPTPSPP 107
P NS P S L P VV PGR L RP P S DP P PP
Sbjct: 2377 PFNSGPAASSGLLGLATSVLPTTTVVQTAGPGRPLPQRPMPDQTNTSTAGTTDPVPGPP 2435
Score = 30.0 bits (66), Expect = 3.2
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 46 RRQGDLPLPTNSNPVLSLELCDPGQGP--APFQAVVVLIQPGRGLALRPPPSCLFPPDPT 103
R D+PL +S + + GP A QA+++L + L+ PP+ + P PT
Sbjct: 299 RPSSDIPLDNSSTVNMEANVAQTEDGPPEAEVQALILLDEEVMALSPPSPPTATWDPSPT 358
>gi|169207014 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2706
Score = 32.0 bits (71), Expect = 0.84
Identities = 22/59 (37%), Positives = 22/59 (37%), Gaps = 5/59 (8%)
Query: 54 PTNSNPVLSLELCDPGQGPAPFQAVVVLIQPGRGLALRPPP-----SCLFPPDPTPSPP 107
P NS P S L P VV PGR L RP P S DP P PP
Sbjct: 2377 PFNSGPAASSGLLGLATSVLPTTTVVQTAGPGRPLPQRPMPDQTNTSTAGTTDPVPGPP 2435
Score = 30.0 bits (66), Expect = 3.2
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 46 RRQGDLPLPTNSNPVLSLELCDPGQGP--APFQAVVVLIQPGRGLALRPPPSCLFPPDPT 103
R D+PL +S + + GP A QA+++L + L+ PP+ + P PT
Sbjct: 299 RPSSDIPLDNSSTVNMEANVAQTEDGPPEAEVQALILLDEEVMALSPPSPPTATWDPSPT 358
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 32.0 bits (71), Expect = 0.84
Identities = 24/65 (36%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 52 PLPTNS-NPVLSLELCDPGQGPAPFQAVVVLIQPGRGLALRPPPSCLFPPDPTPSPPAGQ 110
P+P ++ NP+ L + P P Q I P A PPP+C PP TP PPA
Sbjct: 2465 PVPISAPNPITILPVHILPSPPPPSQ-----IPPCSSPACTPPPACTPPPAHTP-PPAQT 2518
Query: 111 IRVKP 115
V P
Sbjct: 2519 CLVTP 2523
>gi|239747100 PREDICTED: hypothetical protein XP_002344493 [Homo
sapiens]
Length = 300
Score = 31.6 bits (70), Expect = 1.1
Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 5/75 (6%)
Query: 37 GTQEWL-DERRRQGDLPLPTNSNPVLSLELCDPGQGPAPFQAVVVLIQPGRGLALRPPPS 95
G + W D+R RQG LP +P + G G + + P L PP
Sbjct: 128 GEEMWARDKRDRQGALPAQRGKSPACR----ETGVGAEGCRVLTAEAHPVMALPAPPPSP 183
Query: 96 CLFPPDPTPSPPAGQ 110
P+P P P A +
Sbjct: 184 AARQPEPPPMPRAAR 198
>gi|42544243 dynamin 3 isoform a [Homo sapiens]
Length = 863
Score = 31.6 bits (70), Expect = 1.1
Identities = 27/92 (29%), Positives = 36/92 (39%), Gaps = 11/92 (11%)
Query: 20 GLRGAVTTVGMIKSDVPGTQE-WLDERRRQGDLPLPTNSNPVLSLELCDP--GQGPAPFQ 76
G+ G ++T + P + W+ RR T P LS L P G+GPAP
Sbjct: 734 GIIGDISTATVSTPAPPPVDDSWIQHSRRSPPPSPTTQRRPTLSAPLARPTSGRGPAP-- 791
Query: 77 AVVVLIQPGRGLALRPPPSCLFPPDPTPSPPA 108
+ PG P P F P P P P+
Sbjct: 792 ---AIPSPGPHSGAPPVP---FRPGPLPPFPS 817
>gi|209915561 dynamin 3 isoform b [Homo sapiens]
Length = 859
Score = 31.6 bits (70), Expect = 1.1
Identities = 27/92 (29%), Positives = 36/92 (39%), Gaps = 11/92 (11%)
Query: 20 GLRGAVTTVGMIKSDVPGTQE-WLDERRRQGDLPLPTNSNPVLSLELCDP--GQGPAPFQ 76
G+ G ++T + P + W+ RR T P LS L P G+GPAP
Sbjct: 730 GIIGDISTATVSTPAPPPVDDSWIQHSRRSPPPSPTTQRRPTLSAPLARPTSGRGPAP-- 787
Query: 77 AVVVLIQPGRGLALRPPPSCLFPPDPTPSPPA 108
+ PG P P F P P P P+
Sbjct: 788 ---AIPSPGPHSGAPPVP---FRPGPLPPFPS 813
>gi|62988322 TSPY-like 1 [Homo sapiens]
Length = 437
Score = 31.6 bits (70), Expect = 1.1
Identities = 41/148 (27%), Positives = 59/148 (39%), Gaps = 18/148 (12%)
Query: 76 QAVVVLIQPGRG----LALRPPPSCL---FPPDPTPSPPAGQIRVKPDRTGV-VTDGVKH 127
+A V+ +PG G +AL PPP P D QIRV R V + G +
Sbjct: 41 EATQVMAEPGEGGSETVALPPPPPSEEGGVPQDAAGRGGTPQIRVVGGRGHVAIKAGQEE 100
Query: 128 SMNPFCEIAVEEAVRLKEKKLVKEVIAVSCGPAQC-QETIRTALAMGADRGIHVEVPPAE 186
P +A V ++ L K V C + + L GA+ AE
Sbjct: 101 GQPPAEGLAAASVVMAADRSLKKGVQGGEKALEICGAQRSASELTAGAE---------AE 151
Query: 187 AERLGPLQVARVLAKLAEKEKVDLVLLG 214
AE + + A V A +AE+E ++V G
Sbjct: 152 AEEVKTGKCATVSAAVAERESAEVVKEG 179
>gi|26667199 calcium/calmodulin-dependent protein kinase II gamma
isoform 3 [Homo sapiens]
Length = 518
Score = 31.2 bits (69), Expect = 1.4
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Query: 8 TINTVNLRNTLSGLRGAVTTVGMIKSDVPGTQEWLDERRRQGDLPLPTNSNPVLSLELCD 67
T+ + N L+GA+ T ++ + + L+++ G P N N ++S
Sbjct: 287 TVECLRKFNARRKLKGAILTTMLVSRNFSAAKSLLNKKSDGGVKPQSNNKNSLVS----- 341
Query: 68 PGQGPAPFQAVV 79
P Q PAP Q +
Sbjct: 342 PAQEPAPLQTAM 353
>gi|239757043 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 996
Score = 31.2 bits (69), Expect = 1.4
Identities = 32/126 (25%), Positives = 46/126 (36%), Gaps = 25/126 (19%)
Query: 84 PGRGLALRPPPSCLFPPDPTPSPPAGQIRVKPDRTG-VVTDGVKHSMNPFCEIAVEEAVR 142
PG L PS F PD P G +KP++ G V+ G+ P + ++ R
Sbjct: 7 PGPNDILLASPSSAFQPDTLSQPRPGHANLKPNQVGQVILYGI-----PIVSLVIDGQER 61
Query: 143 L------------------KEKKLVKEVIAVSCGPAQCQETIRTALAMGADRGIHVEVPP 184
L +++ + V C P Q E +R A AM +
Sbjct: 62 LCLAQISNTLLKNFSYNEIHNRRVALGITCVQCTPVQL-EILRRAGAMPISSRRCGMITK 120
Query: 185 AEAERL 190
EAERL
Sbjct: 121 REAERL 126
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.136 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,656,558
Number of Sequences: 37866
Number of extensions: 785590
Number of successful extensions: 4659
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 101
Number of HSP's that attempted gapping in prelim test: 4365
Number of HSP's gapped (non-prelim): 376
length of query: 346
length of database: 18,247,518
effective HSP length: 103
effective length of query: 243
effective length of database: 14,347,320
effective search space: 3486398760
effective search space used: 3486398760
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.